Experiment: KB with Curcumin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4206 and Psyr_4207 are separated by 15 nucleotides Psyr_4207 and Psyr_4208 are separated by 391 nucleotides Psyr_4208 and Psyr_4209 are separated by 83 nucleotides
Psyr_4206: Psyr_4206 - GGDEF domain protein, at 5,008,801 to 5,009,886
_4206
Psyr_4207: Psyr_4207 - GCN5-related N-acetyltransferase, at 5,009,902 to 5,010,333
_4207
Psyr_4208: Psyr_4208 - heme catalase/peroxidase, at 5,010,725 to 5,012,995
_4208
Psyr_4209: Psyr_4209 - PAC motif:Bacterial chemotaxis sensory transducer, at 5,013,079 to 5,014,383
_4209
Position (kb) 5010
5011
5012
5013 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5009.761 kb on + strand, within Psyr_4206 at 5009.761 kb on + strand at 5009.762 kb on - strand, within Psyr_4206 at 5009.762 kb on - strand, within Psyr_4206 at 5009.762 kb on - strand, within Psyr_4206 at 5009.762 kb on - strand, within Psyr_4206 at 5009.762 kb on - strand, within Psyr_4206 at 5009.762 kb on - strand, within Psyr_4206 at 5009.762 kb on - strand, within Psyr_4206 at 5009.764 kb on + strand, within Psyr_4206 at 5009.764 kb on + strand, within Psyr_4206 at 5009.765 kb on - strand, within Psyr_4206 at 5009.765 kb on - strand, within Psyr_4206 at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.786 kb on + strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.787 kb on - strand at 5009.790 kb on + strand at 5009.791 kb on - strand at 5009.874 kb on + strand at 5009.875 kb on - strand at 5009.884 kb on + strand at 5009.997 kb on + strand, within Psyr_4207 at 5009.997 kb on + strand, within Psyr_4207 at 5009.998 kb on - strand, within Psyr_4207 at 5009.998 kb on - strand, within Psyr_4207 at 5009.998 kb on - strand, within Psyr_4207 at 5009.998 kb on - strand, within Psyr_4207 at 5010.026 kb on + strand, within Psyr_4207 at 5010.026 kb on + strand, within Psyr_4207 at 5010.026 kb on + strand, within Psyr_4207 at 5010.026 kb on + strand, within Psyr_4207 at 5010.026 kb on + strand, within Psyr_4207 at 5010.027 kb on - strand, within Psyr_4207 at 5010.027 kb on - strand, within Psyr_4207 at 5010.027 kb on - strand, within Psyr_4207 at 5010.027 kb on - strand, within Psyr_4207 at 5010.027 kb on - strand, within Psyr_4207 at 5010.027 kb on - strand, within Psyr_4207 at 5010.027 kb on - strand, within Psyr_4207 at 5010.027 kb on - strand at 5010.030 kb on + strand, within Psyr_4207 at 5010.218 kb on + strand, within Psyr_4207 at 5010.218 kb on + strand, within Psyr_4207 at 5010.299 kb on + strand at 5010.300 kb on - strand at 5010.300 kb on - strand at 5010.300 kb on - strand at 5010.338 kb on + strand at 5010.338 kb on + strand at 5010.374 kb on - strand at 5010.442 kb on + strand at 5010.443 kb on - strand at 5010.443 kb on - strand at 5010.446 kb on - strand at 5010.446 kb on - strand at 5010.476 kb on + strand at 5010.477 kb on - strand at 5010.519 kb on + strand at 5010.519 kb on + strand at 5010.520 kb on - strand at 5010.592 kb on - strand at 5010.597 kb on + strand at 5010.597 kb on + strand at 5010.598 kb on - strand at 5010.717 kb on + strand at 5010.718 kb on - strand at 5010.718 kb on - strand at 5010.718 kb on - strand at 5010.866 kb on + strand at 5010.867 kb on - strand at 5010.968 kb on + strand, within Psyr_4208 at 5010.968 kb on + strand, within Psyr_4208 at 5011.010 kb on - strand, within Psyr_4208 at 5011.139 kb on + strand, within Psyr_4208 at 5011.140 kb on - strand, within Psyr_4208 at 5011.140 kb on - strand, within Psyr_4208 at 5011.140 kb on - strand, within Psyr_4208 at 5011.269 kb on - strand, within Psyr_4208 at 5011.454 kb on + strand, within Psyr_4208 at 5011.454 kb on + strand, within Psyr_4208 at 5011.454 kb on + strand, within Psyr_4208 at 5011.454 kb on + strand, within Psyr_4208 at 5011.454 kb on + strand, within Psyr_4208 at 5011.454 kb on + strand, within Psyr_4208 at 5011.454 kb on + strand, within Psyr_4208 at 5011.455 kb on - strand, within Psyr_4208 at 5011.455 kb on - strand, within Psyr_4208 at 5011.455 kb on - strand, within Psyr_4208 at 5011.455 kb on - strand, within Psyr_4208 at 5012.215 kb on + strand, within Psyr_4208 at 5012.216 kb on - strand, within Psyr_4208 at 5012.216 kb on - strand, within Psyr_4208 at 5012.216 kb on - strand, within Psyr_4208 at 5012.216 kb on - strand, within Psyr_4208 at 5012.216 kb on - strand, within Psyr_4208 at 5012.338 kb on + strand, within Psyr_4208 at 5012.573 kb on + strand, within Psyr_4208 at 5012.573 kb on + strand, within Psyr_4208 at 5012.573 kb on + strand, within Psyr_4208 at 5012.573 kb on + strand, within Psyr_4208 at 5012.574 kb on - strand, within Psyr_4208 at 5012.574 kb on - strand, within Psyr_4208 at 5012.574 kb on - strand, within Psyr_4208 at 5012.574 kb on - strand, within Psyr_4208 at 5012.574 kb on - strand, within Psyr_4208 at 5012.574 kb on - strand, within Psyr_4208 at 5012.574 kb on - strand, within Psyr_4208 at 5012.646 kb on + strand, within Psyr_4208 at 5012.646 kb on + strand, within Psyr_4208 at 5012.646 kb on + strand, within Psyr_4208 at 5012.647 kb on - strand, within Psyr_4208 at 5012.647 kb on - strand, within Psyr_4208 at 5012.797 kb on + strand at 5012.903 kb on + strand at 5012.903 kb on + strand at 5012.903 kb on + strand at 5012.903 kb on + strand at 5012.904 kb on - strand at 5012.904 kb on - strand at 5012.904 kb on - strand at 5012.904 kb on - strand at 5012.904 kb on - strand at 5012.998 kb on + strand at 5012.998 kb on + strand at 5012.998 kb on + strand at 5012.998 kb on + strand at 5012.998 kb on + strand at 5012.998 kb on + strand at 5012.998 kb on + strand at 5012.998 kb on + strand at 5012.999 kb on - strand at 5012.999 kb on - strand at 5012.999 kb on - strand at 5012.999 kb on - strand at 5012.999 kb on - strand at 5012.999 kb on - strand at 5012.999 kb on - strand at 5012.999 kb on - strand at 5012.999 kb on - strand at 5013.078 kb on - strand at 5013.249 kb on + strand, within Psyr_4209 at 5013.259 kb on + strand, within Psyr_4209 at 5013.259 kb on + strand, within Psyr_4209 at 5013.259 kb on + strand, within Psyr_4209 at 5013.260 kb on - strand, within Psyr_4209 at 5013.260 kb on - strand, within Psyr_4209 at 5013.260 kb on - strand, within Psyr_4209 at 5013.260 kb on - strand, within Psyr_4209 at 5013.260 kb on - strand, within Psyr_4209 at 5013.260 kb on - strand, within Psyr_4209 at 5013.260 kb on - strand, within Psyr_4209 at 5013.260 kb on - strand, within Psyr_4209 at 5013.260 kb on - strand, within Psyr_4209 at 5013.260 kb on - strand, within Psyr_4209 at 5013.260 kb on - strand, within Psyr_4209 at 5013.569 kb on - strand, within Psyr_4209 at 5013.569 kb on - strand, within Psyr_4209 at 5013.569 kb on - strand, within Psyr_4209 at 5013.672 kb on - strand, within Psyr_4209 at 5013.723 kb on + strand, within Psyr_4209 at 5013.723 kb on + strand, within Psyr_4209 at 5013.817 kb on + strand, within Psyr_4209 at 5013.836 kb on + strand, within Psyr_4209 at 5013.836 kb on + strand, within Psyr_4209 at 5013.836 kb on + strand, within Psyr_4209 at 5013.836 kb on + strand, within Psyr_4209 at 5013.837 kb on - strand, within Psyr_4209 at 5013.837 kb on - strand, within Psyr_4209 at 5013.837 kb on - strand, within Psyr_4209 at 5013.848 kb on + strand, within Psyr_4209 at 5013.848 kb on + strand, within Psyr_4209 at 5013.849 kb on - strand, within Psyr_4209 at 5013.948 kb on + strand, within Psyr_4209 at 5013.948 kb on + strand, within Psyr_4209 at 5013.949 kb on - strand, within Psyr_4209 at 5013.985 kb on + strand, within Psyr_4209 at 5013.986 kb on - strand, within Psyr_4209 at 5013.986 kb on - strand, within Psyr_4209 at 5013.986 kb on - strand, within Psyr_4209
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Curcumin 10 mM remove 5,009,761 + Psyr_4206 0.88 +0.5 5,009,761 + +2.5 5,009,762 - Psyr_4206 0.88 -0.7 5,009,762 - Psyr_4206 0.88 -1.5 5,009,762 - Psyr_4206 0.88 +0.1 5,009,762 - Psyr_4206 0.88 -0.1 5,009,762 - Psyr_4206 0.88 -0.4 5,009,762 - Psyr_4206 0.88 -0.5 5,009,762 - Psyr_4206 0.88 -0.7 5,009,764 + Psyr_4206 0.89 +0.5 5,009,764 + Psyr_4206 0.89 -0.3 5,009,765 - Psyr_4206 0.89 -0.6 5,009,765 - Psyr_4206 0.89 +0.9 5,009,786 + +0.4 5,009,786 + +0.3 5,009,786 + +1.9 5,009,786 + +0.5 5,009,786 + +2.5 5,009,786 + +1.9 5,009,786 + +0.7 5,009,786 + +1.3 5,009,786 + -0.6 5,009,786 + +0.3 5,009,786 + -0.6 5,009,787 - -1.7 5,009,787 - -0.2 5,009,787 - -0.1 5,009,787 - -1.6 5,009,787 - -0.0 5,009,787 - +0.9 5,009,787 - +0.9 5,009,787 - -0.2 5,009,787 - -0.7 5,009,787 - +0.5 5,009,787 - -0.9 5,009,787 - +0.8 5,009,787 - -0.3 5,009,787 - -0.5 5,009,787 - -0.9 5,009,787 - +0.7 5,009,790 + +1.3 5,009,791 - -1.3 5,009,874 + +1.2 5,009,875 - +0.1 5,009,884 + -0.9 5,009,997 + Psyr_4207 0.22 -0.6 5,009,997 + Psyr_4207 0.22 -0.3 5,009,998 - Psyr_4207 0.22 +1.0 5,009,998 - Psyr_4207 0.22 +0.5 5,009,998 - Psyr_4207 0.22 +1.6 5,009,998 - Psyr_4207 0.22 +0.1 5,010,026 + Psyr_4207 0.29 -1.0 5,010,026 + Psyr_4207 0.29 +0.3 5,010,026 + Psyr_4207 0.29 +0.7 5,010,026 + Psyr_4207 0.29 +1.6 5,010,026 + Psyr_4207 0.29 -0.9 5,010,027 - Psyr_4207 0.29 -0.4 5,010,027 - Psyr_4207 0.29 -0.1 5,010,027 - Psyr_4207 0.29 +1.6 5,010,027 - Psyr_4207 0.29 +0.6 5,010,027 - Psyr_4207 0.29 +0.1 5,010,027 - Psyr_4207 0.29 +0.6 5,010,027 - Psyr_4207 0.29 -0.7 5,010,027 - -0.1 5,010,030 + Psyr_4207 0.30 +0.1 5,010,218 + Psyr_4207 0.73 +2.2 5,010,218 + Psyr_4207 0.73 -0.5 5,010,299 + -1.1 5,010,300 - -2.8 5,010,300 - -0.1 5,010,300 - -0.1 5,010,338 + -0.8 5,010,338 + +2.8 5,010,374 - +0.2 5,010,442 + -0.7 5,010,443 - +0.4 5,010,443 - -0.3 5,010,446 - +0.5 5,010,446 - +0.9 5,010,476 + +0.4 5,010,477 - +1.5 5,010,519 + -2.2 5,010,519 + +0.6 5,010,520 - +0.3 5,010,592 - +0.6 5,010,597 + +0.4 5,010,597 + +0.9 5,010,598 - -1.1 5,010,717 + +0.0 5,010,718 - -0.4 5,010,718 - +0.6 5,010,718 - +0.4 5,010,866 + +0.1 5,010,867 - -1.1 5,010,968 + Psyr_4208 0.11 +0.6 5,010,968 + Psyr_4208 0.11 -0.7 5,011,010 - Psyr_4208 0.13 +0.1 5,011,139 + Psyr_4208 0.18 +0.6 5,011,140 - Psyr_4208 0.18 -0.0 5,011,140 - Psyr_4208 0.18 +0.4 5,011,140 - Psyr_4208 0.18 +0.7 5,011,269 - Psyr_4208 0.24 -0.0 5,011,454 + Psyr_4208 0.32 -0.5 5,011,454 + Psyr_4208 0.32 +0.5 5,011,454 + Psyr_4208 0.32 +1.1 5,011,454 + Psyr_4208 0.32 -0.2 5,011,454 + Psyr_4208 0.32 -0.7 5,011,454 + Psyr_4208 0.32 +0.4 5,011,454 + Psyr_4208 0.32 +0.9 5,011,455 - Psyr_4208 0.32 -0.1 5,011,455 - Psyr_4208 0.32 -2.2 5,011,455 - Psyr_4208 0.32 -0.2 5,011,455 - Psyr_4208 0.32 -0.8 5,012,215 + Psyr_4208 0.66 +0.6 5,012,216 - Psyr_4208 0.66 -0.9 5,012,216 - Psyr_4208 0.66 +0.7 5,012,216 - Psyr_4208 0.66 -0.6 5,012,216 - Psyr_4208 0.66 -1.5 5,012,216 - Psyr_4208 0.66 -0.7 5,012,338 + Psyr_4208 0.71 -1.2 5,012,573 + Psyr_4208 0.81 +0.0 5,012,573 + Psyr_4208 0.81 +0.8 5,012,573 + Psyr_4208 0.81 +0.9 5,012,573 + Psyr_4208 0.81 -0.1 5,012,574 - Psyr_4208 0.81 -1.0 5,012,574 - Psyr_4208 0.81 +0.5 5,012,574 - Psyr_4208 0.81 -1.6 5,012,574 - Psyr_4208 0.81 +0.3 5,012,574 - Psyr_4208 0.81 +1.0 5,012,574 - Psyr_4208 0.81 +0.7 5,012,574 - Psyr_4208 0.81 +1.4 5,012,646 + Psyr_4208 0.85 +0.7 5,012,646 + Psyr_4208 0.85 -0.9 5,012,646 + Psyr_4208 0.85 +0.7 5,012,647 - Psyr_4208 0.85 +0.9 5,012,647 - Psyr_4208 0.85 +1.6 5,012,797 + -0.3 5,012,903 + -1.7 5,012,903 + -1.4 5,012,903 + -2.2 5,012,903 + +0.3 5,012,904 - -0.2 5,012,904 - +0.9 5,012,904 - -1.7 5,012,904 - -0.9 5,012,904 - -0.6 5,012,998 + +0.5 5,012,998 + -1.4 5,012,998 + +1.3 5,012,998 + +1.1 5,012,998 + +1.1 5,012,998 + +0.6 5,012,998 + -0.5 5,012,998 + +0.2 5,012,999 - -0.3 5,012,999 - -1.7 5,012,999 - +0.5 5,012,999 - -1.1 5,012,999 - +0.4 5,012,999 - -1.3 5,012,999 - -1.1 5,012,999 - +1.3 5,012,999 - -0.1 5,013,078 - -0.1 5,013,249 + Psyr_4209 0.13 +0.3 5,013,259 + Psyr_4209 0.14 +0.2 5,013,259 + Psyr_4209 0.14 -0.5 5,013,259 + Psyr_4209 0.14 +1.2 5,013,260 - Psyr_4209 0.14 +0.7 5,013,260 - Psyr_4209 0.14 -0.2 5,013,260 - Psyr_4209 0.14 +0.9 5,013,260 - Psyr_4209 0.14 -1.0 5,013,260 - Psyr_4209 0.14 -0.1 5,013,260 - Psyr_4209 0.14 +0.5 5,013,260 - Psyr_4209 0.14 -0.4 5,013,260 - Psyr_4209 0.14 -1.0 5,013,260 - Psyr_4209 0.14 -2.0 5,013,260 - Psyr_4209 0.14 -0.1 5,013,260 - Psyr_4209 0.14 -1.5 5,013,569 - Psyr_4209 0.38 +0.3 5,013,569 - Psyr_4209 0.38 -1.3 5,013,569 - Psyr_4209 0.38 +4.4 5,013,672 - Psyr_4209 0.45 -0.3 5,013,723 + Psyr_4209 0.49 -0.2 5,013,723 + Psyr_4209 0.49 -0.5 5,013,817 + Psyr_4209 0.57 +0.8 5,013,836 + Psyr_4209 0.58 +1.4 5,013,836 + Psyr_4209 0.58 -1.4 5,013,836 + Psyr_4209 0.58 -0.8 5,013,836 + Psyr_4209 0.58 -0.8 5,013,837 - Psyr_4209 0.58 +1.8 5,013,837 - Psyr_4209 0.58 +0.2 5,013,837 - Psyr_4209 0.58 -1.2 5,013,848 + Psyr_4209 0.59 -0.4 5,013,848 + Psyr_4209 0.59 -0.8 5,013,849 - Psyr_4209 0.59 +1.9 5,013,948 + Psyr_4209 0.67 -0.2 5,013,948 + Psyr_4209 0.67 +0.8 5,013,949 - Psyr_4209 0.67 -0.4 5,013,985 + Psyr_4209 0.69 +0.6 5,013,986 - Psyr_4209 0.70 +0.0 5,013,986 - Psyr_4209 0.70 +0.6 5,013,986 - Psyr_4209 0.70 +0.3
Or see this region's nucleotide sequence