Experiment: KB with Curcumin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3650 and Psyr_3651 are separated by 3 nucleotides Psyr_3651 and Psyr_3652 are separated by 12 nucleotides Psyr_3652 and Psyr_3653 are separated by 207 nucleotides
Psyr_3650: Psyr_3650 - 3-demethylubiquinone-9 3-methyltransferase, at 4,336,233 to 4,336,931
_3650
Psyr_3651: Psyr_3651 - 2-phosphoglycolate phosphatase, prokaryotic:HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1, at 4,336,935 to 4,337,606
_3651
Psyr_3652: Psyr_3652 - Short-chain dehydrogenase/reductase SDR, at 4,337,619 to 4,338,359
_3652
Psyr_3653: Psyr_3653 - GGDEF domain protein, at 4,338,567 to 4,339,493
_3653
Position (kb) 4337
4338
4339 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4337.502 kb on + strand, within Psyr_3651 at 4337.616 kb on + strand at 4337.616 kb on + strand at 4337.616 kb on + strand at 4337.616 kb on + strand at 4337.616 kb on + strand at 4337.616 kb on + strand at 4337.617 kb on - strand at 4337.617 kb on - strand at 4337.617 kb on - strand at 4337.617 kb on - strand at 4337.617 kb on - strand at 4337.617 kb on - strand at 4337.715 kb on + strand, within Psyr_3652 at 4337.821 kb on + strand, within Psyr_3652 at 4337.857 kb on - strand, within Psyr_3652 at 4337.899 kb on + strand, within Psyr_3652 at 4337.916 kb on - strand, within Psyr_3652 at 4337.939 kb on + strand, within Psyr_3652 at 4338.082 kb on + strand, within Psyr_3652 at 4338.082 kb on + strand, within Psyr_3652 at 4338.083 kb on - strand, within Psyr_3652 at 4338.083 kb on - strand, within Psyr_3652 at 4338.083 kb on - strand, within Psyr_3652 at 4338.083 kb on - strand, within Psyr_3652 at 4338.083 kb on - strand, within Psyr_3652 at 4338.083 kb on - strand, within Psyr_3652 at 4338.298 kb on - strand at 4338.417 kb on - strand at 4338.468 kb on - strand at 4338.481 kb on + strand at 4338.546 kb on + strand at 4338.546 kb on + strand at 4338.546 kb on + strand at 4338.546 kb on + strand at 4338.547 kb on - strand at 4338.547 kb on - strand at 4338.547 kb on - strand at 4338.547 kb on - strand at 4338.632 kb on + strand at 4338.684 kb on + strand, within Psyr_3653 at 4338.754 kb on + strand, within Psyr_3653 at 4338.754 kb on + strand, within Psyr_3653 at 4338.754 kb on + strand, within Psyr_3653 at 4338.755 kb on - strand, within Psyr_3653 at 4338.755 kb on - strand, within Psyr_3653 at 4338.755 kb on - strand, within Psyr_3653 at 4338.755 kb on - strand, within Psyr_3653 at 4338.755 kb on - strand, within Psyr_3653 at 4338.755 kb on - strand, within Psyr_3653 at 4338.755 kb on - strand, within Psyr_3653 at 4338.786 kb on + strand, within Psyr_3653 at 4338.786 kb on + strand, within Psyr_3653 at 4338.786 kb on + strand, within Psyr_3653 at 4338.787 kb on - strand, within Psyr_3653 at 4338.960 kb on + strand, within Psyr_3653 at 4339.152 kb on + strand, within Psyr_3653 at 4339.152 kb on + strand, within Psyr_3653 at 4339.152 kb on + strand, within Psyr_3653
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Curcumin 10 mM remove 4,337,502 + Psyr_3651 0.84 +1.0 4,337,616 + +0.5 4,337,616 + -0.4 4,337,616 + +0.5 4,337,616 + +0.3 4,337,616 + -0.0 4,337,616 + -0.8 4,337,617 - +1.1 4,337,617 - +0.9 4,337,617 - -0.8 4,337,617 - -0.3 4,337,617 - +1.0 4,337,617 - -0.5 4,337,715 + Psyr_3652 0.13 +0.1 4,337,821 + Psyr_3652 0.27 +0.6 4,337,857 - Psyr_3652 0.32 -3.0 4,337,899 + Psyr_3652 0.38 -0.1 4,337,916 - Psyr_3652 0.40 +1.2 4,337,939 + Psyr_3652 0.43 +0.7 4,338,082 + Psyr_3652 0.62 +1.5 4,338,082 + Psyr_3652 0.62 -1.8 4,338,083 - Psyr_3652 0.63 -0.3 4,338,083 - Psyr_3652 0.63 -0.6 4,338,083 - Psyr_3652 0.63 +0.3 4,338,083 - Psyr_3652 0.63 +0.8 4,338,083 - Psyr_3652 0.63 +2.5 4,338,083 - Psyr_3652 0.63 -0.2 4,338,298 - -0.5 4,338,417 - -0.5 4,338,468 - +1.0 4,338,481 + +0.3 4,338,546 + +0.5 4,338,546 + -2.5 4,338,546 + +1.5 4,338,546 + -1.6 4,338,547 - +0.3 4,338,547 - -1.4 4,338,547 - -0.4 4,338,547 - +1.1 4,338,632 + +0.1 4,338,684 + Psyr_3653 0.13 +3.5 4,338,754 + Psyr_3653 0.20 +1.1 4,338,754 + Psyr_3653 0.20 -0.1 4,338,754 + Psyr_3653 0.20 -0.0 4,338,755 - Psyr_3653 0.20 +0.6 4,338,755 - Psyr_3653 0.20 +1.9 4,338,755 - Psyr_3653 0.20 +1.0 4,338,755 - Psyr_3653 0.20 +0.5 4,338,755 - Psyr_3653 0.20 +0.1 4,338,755 - Psyr_3653 0.20 +0.7 4,338,755 - Psyr_3653 0.20 +1.9 4,338,786 + Psyr_3653 0.24 -1.1 4,338,786 + Psyr_3653 0.24 -0.5 4,338,786 + Psyr_3653 0.24 -0.5 4,338,787 - Psyr_3653 0.24 +2.3 4,338,960 + Psyr_3653 0.42 -0.7 4,339,152 + Psyr_3653 0.63 -1.8 4,339,152 + Psyr_3653 0.63 +1.0 4,339,152 + Psyr_3653 0.63 -0.1
Or see this region's nucleotide sequence