Experiment: KB with Curcumin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1521 and Psyr_1522 are separated by 815 nucleotides Psyr_1522 and Psyr_1523 are separated by 1 nucleotides Psyr_1523 and Psyr_1524 overlap by 4 nucleotides
Psyr_1521: Psyr_1521 - hypothetical protein, at 1,710,223 to 1,712,109
_1521
Psyr_1522: Psyr_1522 - Single-strand binding protein, at 1,712,925 to 1,713,389
_1522
Psyr_1523: Psyr_1523 - hypothetical protein, at 1,713,391 to 1,713,975
_1523
Psyr_1524: Psyr_1524 - conserved hypothetical protein, at 1,713,972 to 1,714,751
_1524
Position (kb) 1712
1713
1714 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1711.961 kb on + strand at 1711.969 kb on + strand at 1711.969 kb on + strand at 1711.997 kb on - strand at 1712.094 kb on + strand at 1712.094 kb on + strand at 1712.150 kb on - strand at 1712.176 kb on - strand at 1712.314 kb on + strand at 1712.314 kb on + strand at 1712.314 kb on + strand at 1712.314 kb on + strand at 1712.314 kb on + strand at 1712.315 kb on - strand at 1712.315 kb on - strand at 1712.315 kb on - strand at 1712.398 kb on + strand at 1712.436 kb on - strand at 1712.436 kb on - strand at 1712.444 kb on + strand at 1712.444 kb on + strand at 1712.444 kb on + strand at 1712.444 kb on + strand at 1712.445 kb on - strand at 1712.445 kb on - strand at 1712.445 kb on - strand at 1712.445 kb on - strand at 1712.445 kb on - strand at 1712.445 kb on - strand at 1712.445 kb on - strand at 1712.445 kb on - strand at 1712.450 kb on + strand at 1712.450 kb on + strand at 1712.450 kb on + strand at 1712.450 kb on + strand at 1712.450 kb on + strand at 1712.450 kb on + strand at 1712.451 kb on - strand at 1712.451 kb on - strand at 1712.451 kb on - strand at 1712.451 kb on - strand at 1712.451 kb on - strand at 1712.490 kb on + strand at 1712.490 kb on + strand at 1712.491 kb on - strand at 1712.491 kb on - strand at 1712.493 kb on + strand at 1712.494 kb on - strand at 1712.494 kb on - strand at 1712.494 kb on - strand at 1712.494 kb on - strand at 1712.551 kb on + strand at 1712.551 kb on + strand at 1712.551 kb on + strand at 1712.551 kb on + strand at 1712.551 kb on + strand at 1712.551 kb on + strand at 1712.552 kb on - strand at 1712.552 kb on - strand at 1712.552 kb on - strand at 1712.552 kb on - strand at 1712.552 kb on - strand at 1712.620 kb on + strand at 1712.666 kb on + strand at 1712.694 kb on + strand at 1712.694 kb on + strand at 1712.694 kb on + strand at 1712.694 kb on + strand at 1712.694 kb on + strand at 1712.694 kb on + strand at 1712.694 kb on + strand at 1712.694 kb on + strand at 1712.694 kb on + strand at 1712.694 kb on + strand at 1712.694 kb on + strand at 1712.694 kb on + strand at 1712.695 kb on - strand at 1712.695 kb on - strand at 1712.695 kb on - strand at 1712.695 kb on - strand at 1712.695 kb on - strand at 1712.695 kb on - strand at 1712.695 kb on - strand at 1712.695 kb on - strand at 1712.744 kb on + strand at 1712.744 kb on + strand at 1712.745 kb on - strand at 1712.745 kb on - strand at 1712.745 kb on - strand at 1712.745 kb on - strand at 1712.781 kb on + strand at 1712.837 kb on + strand at 1712.837 kb on + strand at 1712.838 kb on - strand at 1712.838 kb on - strand at 1712.838 kb on - strand at 1712.838 kb on - strand at 1712.926 kb on + strand at 1713.016 kb on + strand, within Psyr_1522 at 1713.016 kb on + strand, within Psyr_1522 at 1713.016 kb on + strand, within Psyr_1522 at 1713.017 kb on - strand, within Psyr_1522 at 1713.017 kb on - strand, within Psyr_1522 at 1713.017 kb on - strand, within Psyr_1522 at 1713.017 kb on - strand, within Psyr_1522 at 1713.125 kb on + strand, within Psyr_1522 at 1713.125 kb on + strand, within Psyr_1522 at 1713.125 kb on + strand, within Psyr_1522 at 1713.125 kb on + strand, within Psyr_1522 at 1713.185 kb on - strand, within Psyr_1522 at 1713.185 kb on - strand, within Psyr_1522 at 1713.209 kb on - strand, within Psyr_1522 at 1713.213 kb on + strand, within Psyr_1522 at 1713.213 kb on + strand, within Psyr_1522 at 1713.213 kb on + strand, within Psyr_1522 at 1713.213 kb on + strand, within Psyr_1522 at 1713.213 kb on + strand, within Psyr_1522 at 1713.214 kb on - strand, within Psyr_1522 at 1713.214 kb on - strand, within Psyr_1522 at 1713.214 kb on - strand, within Psyr_1522 at 1713.214 kb on - strand, within Psyr_1522 at 1713.214 kb on - strand, within Psyr_1522 at 1713.214 kb on - strand, within Psyr_1522 at 1713.284 kb on - strand, within Psyr_1522 at 1713.338 kb on + strand, within Psyr_1522 at 1713.363 kb on - strand at 1713.375 kb on + strand at 1713.376 kb on - strand at 1713.376 kb on - strand at 1713.376 kb on - strand at 1713.392 kb on + strand at 1713.392 kb on + strand at 1713.529 kb on + strand, within Psyr_1523 at 1713.529 kb on + strand, within Psyr_1523 at 1713.529 kb on + strand, within Psyr_1523 at 1713.529 kb on + strand, within Psyr_1523 at 1713.529 kb on + strand, within Psyr_1523 at 1713.529 kb on + strand, within Psyr_1523 at 1713.530 kb on - strand, within Psyr_1523 at 1713.530 kb on - strand, within Psyr_1523 at 1713.530 kb on - strand, within Psyr_1523 at 1713.530 kb on - strand, within Psyr_1523 at 1713.538 kb on - strand, within Psyr_1523 at 1713.715 kb on + strand, within Psyr_1523 at 1713.715 kb on + strand, within Psyr_1523 at 1713.715 kb on + strand, within Psyr_1523 at 1713.715 kb on + strand, within Psyr_1523 at 1713.715 kb on + strand, within Psyr_1523 at 1713.715 kb on + strand, within Psyr_1523 at 1713.716 kb on - strand, within Psyr_1523 at 1713.716 kb on - strand, within Psyr_1523 at 1713.716 kb on - strand, within Psyr_1523 at 1713.716 kb on - strand, within Psyr_1523 at 1713.716 kb on - strand, within Psyr_1523 at 1713.716 kb on - strand, within Psyr_1523 at 1713.726 kb on - strand, within Psyr_1523 at 1713.726 kb on - strand, within Psyr_1523 at 1713.799 kb on + strand, within Psyr_1523 at 1713.799 kb on + strand, within Psyr_1523 at 1713.799 kb on + strand, within Psyr_1523 at 1713.800 kb on - strand, within Psyr_1523 at 1713.800 kb on - strand, within Psyr_1523 at 1713.834 kb on + strand, within Psyr_1523 at 1713.834 kb on + strand, within Psyr_1523 at 1713.834 kb on + strand, within Psyr_1523 at 1713.834 kb on + strand, within Psyr_1523 at 1713.835 kb on - strand, within Psyr_1523 at 1713.844 kb on + strand, within Psyr_1523 at 1713.844 kb on + strand, within Psyr_1523 at 1713.845 kb on - strand, within Psyr_1523 at 1713.856 kb on + strand, within Psyr_1523 at 1713.880 kb on + strand, within Psyr_1523 at 1713.881 kb on - strand, within Psyr_1523 at 1713.969 kb on + strand at 1714.127 kb on + strand, within Psyr_1524 at 1714.127 kb on + strand, within Psyr_1524 at 1714.128 kb on - strand, within Psyr_1524 at 1714.156 kb on + strand, within Psyr_1524 at 1714.156 kb on + strand, within Psyr_1524 at 1714.156 kb on + strand, within Psyr_1524 at 1714.156 kb on + strand, within Psyr_1524 at 1714.156 kb on + strand, within Psyr_1524 at 1714.156 kb on + strand, within Psyr_1524 at 1714.156 kb on + strand, within Psyr_1524 at 1714.156 kb on + strand, within Psyr_1524 at 1714.156 kb on + strand, within Psyr_1524 at 1714.156 kb on + strand, within Psyr_1524 at 1714.156 kb on + strand, within Psyr_1524 at 1714.156 kb on + strand, within Psyr_1524 at 1714.156 kb on + strand, within Psyr_1524 at 1714.157 kb on - strand, within Psyr_1524 at 1714.157 kb on - strand, within Psyr_1524 at 1714.157 kb on - strand, within Psyr_1524 at 1714.157 kb on - strand, within Psyr_1524 at 1714.157 kb on - strand, within Psyr_1524 at 1714.157 kb on - strand, within Psyr_1524 at 1714.157 kb on - strand, within Psyr_1524 at 1714.157 kb on - strand, within Psyr_1524 at 1714.157 kb on - strand, within Psyr_1524 at 1714.157 kb on - strand, within Psyr_1524 at 1714.157 kb on - strand, within Psyr_1524 at 1714.157 kb on - strand, within Psyr_1524 at 1714.305 kb on + strand, within Psyr_1524 at 1714.305 kb on + strand, within Psyr_1524 at 1714.305 kb on + strand, within Psyr_1524 at 1714.305 kb on + strand, within Psyr_1524 at 1714.306 kb on - strand, within Psyr_1524 at 1714.306 kb on - strand, within Psyr_1524 at 1714.306 kb on - strand, within Psyr_1524 at 1714.306 kb on - strand, within Psyr_1524 at 1714.306 kb on - strand, within Psyr_1524 at 1714.306 kb on - strand, within Psyr_1524 at 1714.306 kb on - strand, within Psyr_1524 at 1714.306 kb on - strand, within Psyr_1524 at 1714.306 kb on - strand, within Psyr_1524
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Curcumin 10 mM remove 1,711,961 + +0.4 1,711,969 + +0.6 1,711,969 + -0.3 1,711,997 - +0.1 1,712,094 + -1.1 1,712,094 + +2.0 1,712,150 - -1.3 1,712,176 - -0.7 1,712,314 + -0.1 1,712,314 + -1.6 1,712,314 + +0.4 1,712,314 + -0.7 1,712,314 + -0.5 1,712,315 - +0.7 1,712,315 - +0.1 1,712,315 - -0.2 1,712,398 + +0.3 1,712,436 - +0.9 1,712,436 - -0.2 1,712,444 + -0.3 1,712,444 + +0.5 1,712,444 + -0.0 1,712,444 + -0.5 1,712,445 - -0.2 1,712,445 - -0.9 1,712,445 - +0.2 1,712,445 - -0.7 1,712,445 - -1.1 1,712,445 - +1.3 1,712,445 - +0.2 1,712,445 - -1.4 1,712,450 + +2.4 1,712,450 + -0.6 1,712,450 + +1.3 1,712,450 + +0.1 1,712,450 + -1.0 1,712,450 + -1.2 1,712,451 - -0.7 1,712,451 - +0.4 1,712,451 - -0.3 1,712,451 - +0.3 1,712,451 - -3.0 1,712,490 + +0.1 1,712,490 + +1.2 1,712,491 - -0.3 1,712,491 - -0.8 1,712,493 + -0.2 1,712,494 - +0.3 1,712,494 - -0.7 1,712,494 - +1.4 1,712,494 - +0.7 1,712,551 + +1.6 1,712,551 + -1.2 1,712,551 + -0.4 1,712,551 + +0.4 1,712,551 + -0.5 1,712,551 + -0.4 1,712,552 - +0.2 1,712,552 - -0.5 1,712,552 - -2.2 1,712,552 - -0.3 1,712,552 - -1.2 1,712,620 + -1.6 1,712,666 + +1.7 1,712,694 + +0.2 1,712,694 + +0.4 1,712,694 + +1.3 1,712,694 + -1.8 1,712,694 + +1.0 1,712,694 + +0.6 1,712,694 + +0.1 1,712,694 + +1.6 1,712,694 + +1.3 1,712,694 + -1.6 1,712,694 + -1.7 1,712,694 + -0.8 1,712,695 - -0.3 1,712,695 - +0.3 1,712,695 - -0.0 1,712,695 - +2.0 1,712,695 - +0.9 1,712,695 - -1.3 1,712,695 - -0.1 1,712,695 - -0.8 1,712,744 + -0.1 1,712,744 + +1.1 1,712,745 - -0.1 1,712,745 - -1.6 1,712,745 - +0.1 1,712,745 - +1.1 1,712,781 + +0.1 1,712,837 + -0.6 1,712,837 + -0.9 1,712,838 - +1.3 1,712,838 - +0.3 1,712,838 - +0.1 1,712,838 - +0.7 1,712,926 + -0.6 1,713,016 + Psyr_1522 0.20 +2.2 1,713,016 + Psyr_1522 0.20 +1.1 1,713,016 + Psyr_1522 0.20 +2.4 1,713,017 - Psyr_1522 0.20 +2.0 1,713,017 - Psyr_1522 0.20 +0.5 1,713,017 - Psyr_1522 0.20 -1.0 1,713,017 - Psyr_1522 0.20 +4.0 1,713,125 + Psyr_1522 0.43 +0.2 1,713,125 + Psyr_1522 0.43 -0.0 1,713,125 + Psyr_1522 0.43 +0.7 1,713,125 + Psyr_1522 0.43 +0.2 1,713,185 - Psyr_1522 0.56 +0.6 1,713,185 - Psyr_1522 0.56 -0.2 1,713,209 - Psyr_1522 0.61 -0.1 1,713,213 + Psyr_1522 0.62 -0.0 1,713,213 + Psyr_1522 0.62 -0.2 1,713,213 + Psyr_1522 0.62 -0.1 1,713,213 + Psyr_1522 0.62 +1.5 1,713,213 + Psyr_1522 0.62 -0.6 1,713,214 - Psyr_1522 0.62 +0.4 1,713,214 - Psyr_1522 0.62 +2.2 1,713,214 - Psyr_1522 0.62 -1.3 1,713,214 - Psyr_1522 0.62 -1.3 1,713,214 - Psyr_1522 0.62 +1.3 1,713,214 - Psyr_1522 0.62 -0.6 1,713,284 - Psyr_1522 0.77 +0.7 1,713,338 + Psyr_1522 0.89 -0.5 1,713,363 - -1.0 1,713,375 + +0.8 1,713,376 - -0.2 1,713,376 - -1.5 1,713,376 - -1.0 1,713,392 + +1.4 1,713,392 + +1.3 1,713,529 + Psyr_1523 0.24 +1.8 1,713,529 + Psyr_1523 0.24 -0.3 1,713,529 + Psyr_1523 0.24 +0.3 1,713,529 + Psyr_1523 0.24 -0.7 1,713,529 + Psyr_1523 0.24 +2.0 1,713,529 + Psyr_1523 0.24 -0.4 1,713,530 - Psyr_1523 0.24 -0.0 1,713,530 - Psyr_1523 0.24 +0.5 1,713,530 - Psyr_1523 0.24 -0.5 1,713,530 - Psyr_1523 0.24 +0.2 1,713,538 - Psyr_1523 0.25 +0.5 1,713,715 + Psyr_1523 0.55 -0.1 1,713,715 + Psyr_1523 0.55 -0.3 1,713,715 + Psyr_1523 0.55 +1.0 1,713,715 + Psyr_1523 0.55 -1.2 1,713,715 + Psyr_1523 0.55 +2.0 1,713,715 + Psyr_1523 0.55 +1.0 1,713,716 - Psyr_1523 0.56 +0.5 1,713,716 - Psyr_1523 0.56 +1.2 1,713,716 - Psyr_1523 0.56 +0.1 1,713,716 - Psyr_1523 0.56 +1.6 1,713,716 - Psyr_1523 0.56 +0.3 1,713,716 - Psyr_1523 0.56 +0.4 1,713,726 - Psyr_1523 0.57 +1.3 1,713,726 - Psyr_1523 0.57 +0.3 1,713,799 + Psyr_1523 0.70 -0.6 1,713,799 + Psyr_1523 0.70 +0.9 1,713,799 + Psyr_1523 0.70 -0.8 1,713,800 - Psyr_1523 0.70 -1.8 1,713,800 - Psyr_1523 0.70 -1.3 1,713,834 + Psyr_1523 0.76 +0.3 1,713,834 + Psyr_1523 0.76 +0.5 1,713,834 + Psyr_1523 0.76 -0.2 1,713,834 + Psyr_1523 0.76 +0.8 1,713,835 - Psyr_1523 0.76 -1.2 1,713,844 + Psyr_1523 0.77 +0.5 1,713,844 + Psyr_1523 0.77 -0.8 1,713,845 - Psyr_1523 0.78 -1.3 1,713,856 + Psyr_1523 0.79 +2.0 1,713,880 + Psyr_1523 0.84 +0.9 1,713,881 - Psyr_1523 0.84 +0.6 1,713,969 + +0.7 1,714,127 + Psyr_1524 0.20 -0.0 1,714,127 + Psyr_1524 0.20 +0.9 1,714,128 - Psyr_1524 0.20 -0.4 1,714,156 + Psyr_1524 0.24 -1.2 1,714,156 + Psyr_1524 0.24 +3.0 1,714,156 + Psyr_1524 0.24 -1.1 1,714,156 + Psyr_1524 0.24 -0.3 1,714,156 + Psyr_1524 0.24 -1.3 1,714,156 + Psyr_1524 0.24 -0.2 1,714,156 + Psyr_1524 0.24 -0.2 1,714,156 + Psyr_1524 0.24 -0.3 1,714,156 + Psyr_1524 0.24 +0.4 1,714,156 + Psyr_1524 0.24 +1.6 1,714,156 + Psyr_1524 0.24 -0.0 1,714,156 + Psyr_1524 0.24 +2.0 1,714,156 + Psyr_1524 0.24 -0.1 1,714,157 - Psyr_1524 0.24 +1.3 1,714,157 - Psyr_1524 0.24 -1.0 1,714,157 - Psyr_1524 0.24 -1.5 1,714,157 - Psyr_1524 0.24 -0.8 1,714,157 - Psyr_1524 0.24 -1.0 1,714,157 - Psyr_1524 0.24 +3.0 1,714,157 - Psyr_1524 0.24 -0.1 1,714,157 - Psyr_1524 0.24 +0.0 1,714,157 - Psyr_1524 0.24 +0.4 1,714,157 - Psyr_1524 0.24 -2.3 1,714,157 - Psyr_1524 0.24 +0.3 1,714,157 - Psyr_1524 0.24 -2.4 1,714,305 + Psyr_1524 0.43 +1.0 1,714,305 + Psyr_1524 0.43 +0.8 1,714,305 + Psyr_1524 0.43 +0.6 1,714,305 + Psyr_1524 0.43 +0.4 1,714,306 - Psyr_1524 0.43 +0.8 1,714,306 - Psyr_1524 0.43 +0.0 1,714,306 - Psyr_1524 0.43 +1.0 1,714,306 - Psyr_1524 0.43 -2.3 1,714,306 - Psyr_1524 0.43 +2.2 1,714,306 - Psyr_1524 0.43 -1.0 1,714,306 - Psyr_1524 0.43 +1.3 1,714,306 - Psyr_1524 0.43 -0.2 1,714,306 - Psyr_1524 0.43 -2.3
Or see this region's nucleotide sequence