Experiment: KB with Curcumin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1375 and Psyr_1376 are separated by 259 nucleotides Psyr_1376 and Psyr_1377 are separated by 396 nucleotides
Psyr_1375: Psyr_1375 - 4Fe-4S ferredoxin, iron-sulfur binding protein, at 1,558,249 to 1,558,572
_1375
Psyr_1376: Psyr_1376 - DNA mismatch repair protein MutS, at 1,558,832 to 1,561,411
_1376
Psyr_1377: Psyr_1377 - CinA, C-terminal, at 1,561,808 to 1,562,386
_1377
Position (kb) 1558
1559
1560
1561
1562 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1557.836 kb on + strand at 1557.836 kb on + strand at 1557.836 kb on + strand at 1557.836 kb on + strand at 1557.836 kb on + strand at 1557.836 kb on + strand at 1557.836 kb on + strand at 1557.836 kb on + strand at 1557.836 kb on + strand at 1557.836 kb on + strand at 1557.837 kb on - strand at 1557.837 kb on - strand at 1557.837 kb on - strand at 1557.837 kb on - strand at 1557.837 kb on - strand at 1557.837 kb on - strand at 1557.852 kb on + strand at 1557.852 kb on + strand at 1557.853 kb on - strand at 1557.853 kb on - strand at 1557.853 kb on - strand at 1557.868 kb on + strand at 1557.869 kb on - strand at 1557.880 kb on + strand at 1557.891 kb on + strand at 1557.892 kb on - strand at 1557.892 kb on - strand at 1558.250 kb on + strand at 1558.250 kb on + strand at 1558.251 kb on - strand at 1558.251 kb on - strand at 1558.251 kb on - strand at 1558.689 kb on - strand at 1558.720 kb on - strand at 1558.811 kb on - strand at 1558.811 kb on - strand at 1558.811 kb on - strand at 1558.811 kb on - strand at 1558.817 kb on - strand at 1558.817 kb on - strand at 1558.817 kb on - strand at 1558.817 kb on - strand at 1558.817 kb on - strand at 1558.817 kb on - strand at 1558.817 kb on - strand at 1558.817 kb on - strand at 1558.817 kb on - strand at 1558.817 kb on - strand at 1558.817 kb on - strand at 1558.817 kb on - strand at 1558.817 kb on - strand at 1558.817 kb on - strand at 1558.817 kb on - strand at 1558.821 kb on - strand at 1558.821 kb on - strand at 1558.821 kb on - strand at 1558.821 kb on - strand at 1558.821 kb on - strand at 1558.821 kb on - strand at 1558.821 kb on - strand at 1558.854 kb on + strand at 1558.854 kb on + strand at 1558.854 kb on + strand at 1558.855 kb on - strand at 1558.855 kb on - strand at 1558.855 kb on - strand at 1558.855 kb on - strand at 1558.855 kb on - strand at 1558.855 kb on - strand at 1558.855 kb on - strand at 1558.855 kb on - strand at 1558.856 kb on + strand at 1558.856 kb on + strand at 1558.856 kb on + strand at 1558.945 kb on + strand at 1558.945 kb on + strand at 1558.945 kb on + strand at 1558.946 kb on - strand at 1558.946 kb on - strand at 1559.094 kb on + strand, within Psyr_1376 at 1559.094 kb on + strand, within Psyr_1376 at 1559.220 kb on + strand, within Psyr_1376 at 1559.221 kb on - strand, within Psyr_1376 at 1559.221 kb on - strand, within Psyr_1376 at 1559.221 kb on - strand, within Psyr_1376 at 1559.511 kb on - strand, within Psyr_1376 at 1559.533 kb on + strand, within Psyr_1376 at 1559.534 kb on - strand, within Psyr_1376 at 1559.535 kb on + strand, within Psyr_1376 at 1559.535 kb on + strand, within Psyr_1376 at 1559.535 kb on + strand, within Psyr_1376 at 1559.535 kb on + strand, within Psyr_1376 at 1559.535 kb on + strand, within Psyr_1376 at 1559.535 kb on + strand, within Psyr_1376 at 1559.535 kb on + strand, within Psyr_1376 at 1559.535 kb on + strand, within Psyr_1376 at 1559.535 kb on + strand, within Psyr_1376 at 1559.535 kb on + strand, within Psyr_1376 at 1559.535 kb on + strand, within Psyr_1376 at 1559.535 kb on + strand, within Psyr_1376 at 1559.535 kb on + strand, within Psyr_1376 at 1559.536 kb on - strand, within Psyr_1376 at 1559.536 kb on - strand, within Psyr_1376 at 1559.536 kb on - strand, within Psyr_1376 at 1559.536 kb on - strand, within Psyr_1376 at 1559.536 kb on - strand, within Psyr_1376 at 1559.536 kb on - strand, within Psyr_1376 at 1559.536 kb on - strand, within Psyr_1376 at 1559.536 kb on - strand, within Psyr_1376 at 1559.536 kb on - strand, within Psyr_1376 at 1559.536 kb on - strand, within Psyr_1376 at 1559.536 kb on - strand, within Psyr_1376 at 1559.536 kb on - strand, within Psyr_1376 at 1559.536 kb on - strand, within Psyr_1376 at 1559.536 kb on - strand, within Psyr_1376 at 1559.536 kb on - strand, within Psyr_1376 at 1559.536 kb on - strand, within Psyr_1376 at 1559.536 kb on - strand, within Psyr_1376 at 1559.536 kb on - strand, within Psyr_1376 at 1559.536 kb on - strand, within Psyr_1376 at 1559.536 kb on - strand, within Psyr_1376 at 1559.536 kb on - strand, within Psyr_1376 at 1559.536 kb on - strand, within Psyr_1376 at 1559.627 kb on + strand, within Psyr_1376 at 1559.627 kb on + strand, within Psyr_1376 at 1559.627 kb on + strand, within Psyr_1376 at 1559.628 kb on - strand, within Psyr_1376 at 1559.770 kb on + strand, within Psyr_1376 at 1559.900 kb on - strand, within Psyr_1376 at 1559.933 kb on + strand, within Psyr_1376 at 1559.933 kb on + strand, within Psyr_1376 at 1559.933 kb on + strand, within Psyr_1376 at 1559.933 kb on + strand, within Psyr_1376 at 1559.933 kb on + strand, within Psyr_1376 at 1559.934 kb on - strand, within Psyr_1376 at 1559.937 kb on + strand, within Psyr_1376 at 1559.937 kb on + strand, within Psyr_1376 at 1559.937 kb on + strand, within Psyr_1376 at 1559.937 kb on + strand, within Psyr_1376 at 1559.937 kb on + strand, within Psyr_1376 at 1559.937 kb on + strand, within Psyr_1376 at 1559.937 kb on + strand, within Psyr_1376 at 1559.937 kb on + strand, within Psyr_1376 at 1559.937 kb on + strand, within Psyr_1376 at 1559.937 kb on + strand, within Psyr_1376 at 1559.938 kb on - strand, within Psyr_1376 at 1559.938 kb on - strand, within Psyr_1376 at 1559.938 kb on - strand, within Psyr_1376 at 1559.938 kb on - strand, within Psyr_1376 at 1559.938 kb on - strand, within Psyr_1376 at 1559.938 kb on - strand, within Psyr_1376 at 1559.938 kb on - strand, within Psyr_1376 at 1559.938 kb on - strand, within Psyr_1376 at 1559.938 kb on - strand, within Psyr_1376 at 1559.985 kb on + strand, within Psyr_1376 at 1559.986 kb on - strand, within Psyr_1376 at 1560.117 kb on + strand, within Psyr_1376 at 1560.205 kb on - strand, within Psyr_1376 at 1560.205 kb on - strand, within Psyr_1376 at 1560.644 kb on + strand, within Psyr_1376 at 1560.645 kb on - strand, within Psyr_1376 at 1560.662 kb on - strand, within Psyr_1376 at 1560.682 kb on - strand, within Psyr_1376 at 1561.173 kb on + strand at 1561.173 kb on + strand at 1561.250 kb on + strand at 1561.250 kb on + strand at 1561.250 kb on + strand at 1561.250 kb on + strand at 1561.250 kb on + strand at 1561.250 kb on + strand at 1561.288 kb on - strand at 1561.288 kb on - strand at 1561.500 kb on + strand at 1561.521 kb on + strand at 1561.547 kb on + strand at 1561.614 kb on + strand at 1561.614 kb on + strand at 1561.614 kb on + strand at 1561.615 kb on - strand at 1561.615 kb on - strand at 1561.654 kb on + strand at 1561.657 kb on - strand at 1561.670 kb on + strand at 1561.670 kb on + strand at 1561.671 kb on - strand at 1561.671 kb on - strand at 1561.672 kb on + strand at 1561.799 kb on + strand at 1561.799 kb on + strand at 1561.799 kb on + strand at 1561.799 kb on + strand at 1561.799 kb on + strand at 1561.799 kb on + strand at 1561.799 kb on + strand at 1561.800 kb on - strand at 1561.800 kb on - strand at 1561.800 kb on - strand at 1561.800 kb on - strand at 1561.800 kb on - strand at 1561.800 kb on - strand at 1561.800 kb on - strand at 1561.800 kb on - strand at 1561.800 kb on - strand at 1561.800 kb on - strand at 1561.857 kb on - strand at 1561.881 kb on - strand, within Psyr_1377 at 1561.881 kb on - strand, within Psyr_1377 at 1561.881 kb on - strand, within Psyr_1377 at 1562.036 kb on + strand, within Psyr_1377 at 1562.037 kb on - strand, within Psyr_1377 at 1562.073 kb on + strand, within Psyr_1377 at 1562.074 kb on - strand, within Psyr_1377 at 1562.088 kb on + strand, within Psyr_1377 at 1562.089 kb on - strand, within Psyr_1377 at 1562.089 kb on - strand, within Psyr_1377 at 1562.349 kb on + strand at 1562.350 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Curcumin 10 mM remove 1,557,836 + +1.4 1,557,836 + +0.0 1,557,836 + +0.0 1,557,836 + -1.1 1,557,836 + +0.2 1,557,836 + -0.7 1,557,836 + +0.4 1,557,836 + -1.3 1,557,836 + +0.1 1,557,836 + +0.4 1,557,837 - +1.5 1,557,837 - +1.9 1,557,837 - -0.6 1,557,837 - -0.4 1,557,837 - +0.8 1,557,837 - -1.6 1,557,852 + -0.5 1,557,852 + +0.6 1,557,853 - -0.1 1,557,853 - +0.7 1,557,853 - +1.6 1,557,868 + -1.1 1,557,869 - +1.1 1,557,880 + +1.2 1,557,891 + +0.4 1,557,892 - +0.2 1,557,892 - +0.1 1,558,250 + +1.0 1,558,250 + -1.2 1,558,251 - +0.1 1,558,251 - -1.2 1,558,251 - +0.2 1,558,689 - -0.2 1,558,720 - -0.8 1,558,811 - +2.6 1,558,811 - +1.4 1,558,811 - -0.8 1,558,811 - -0.3 1,558,817 - -0.5 1,558,817 - +0.0 1,558,817 - +2.8 1,558,817 - +0.2 1,558,817 - +1.4 1,558,817 - -0.4 1,558,817 - +1.0 1,558,817 - +0.4 1,558,817 - +1.0 1,558,817 - -0.4 1,558,817 - +0.0 1,558,817 - -0.3 1,558,817 - +0.2 1,558,817 - -1.2 1,558,817 - -1.2 1,558,821 - +0.4 1,558,821 - -0.1 1,558,821 - -1.0 1,558,821 - -0.6 1,558,821 - -0.1 1,558,821 - -0.5 1,558,821 - +0.2 1,558,854 + -1.3 1,558,854 + +1.6 1,558,854 + +0.2 1,558,855 - -0.4 1,558,855 - +1.3 1,558,855 - +1.2 1,558,855 - +0.2 1,558,855 - +0.7 1,558,855 - -0.3 1,558,855 - +0.0 1,558,855 - +0.6 1,558,856 + -2.6 1,558,856 + +0.2 1,558,856 + -1.1 1,558,945 + +0.3 1,558,945 + +2.3 1,558,945 + +0.5 1,558,946 - -0.9 1,558,946 - +0.2 1,559,094 + Psyr_1376 0.10 +0.6 1,559,094 + Psyr_1376 0.10 +1.4 1,559,220 + Psyr_1376 0.15 -0.8 1,559,221 - Psyr_1376 0.15 -0.5 1,559,221 - Psyr_1376 0.15 -0.2 1,559,221 - Psyr_1376 0.15 -0.7 1,559,511 - Psyr_1376 0.26 -1.7 1,559,533 + Psyr_1376 0.27 +1.5 1,559,534 - Psyr_1376 0.27 -1.3 1,559,535 + Psyr_1376 0.27 -0.4 1,559,535 + Psyr_1376 0.27 +0.0 1,559,535 + Psyr_1376 0.27 -0.1 1,559,535 + Psyr_1376 0.27 +0.9 1,559,535 + Psyr_1376 0.27 -0.6 1,559,535 + Psyr_1376 0.27 +0.1 1,559,535 + Psyr_1376 0.27 +0.4 1,559,535 + Psyr_1376 0.27 +1.3 1,559,535 + Psyr_1376 0.27 +0.2 1,559,535 + Psyr_1376 0.27 +0.8 1,559,535 + Psyr_1376 0.27 +1.2 1,559,535 + Psyr_1376 0.27 +0.5 1,559,535 + Psyr_1376 0.27 +1.1 1,559,536 - Psyr_1376 0.27 +0.8 1,559,536 - Psyr_1376 0.27 +0.0 1,559,536 - Psyr_1376 0.27 -1.5 1,559,536 - Psyr_1376 0.27 -2.9 1,559,536 - Psyr_1376 0.27 -0.2 1,559,536 - Psyr_1376 0.27 +0.2 1,559,536 - Psyr_1376 0.27 -0.8 1,559,536 - Psyr_1376 0.27 -0.2 1,559,536 - Psyr_1376 0.27 +0.9 1,559,536 - Psyr_1376 0.27 -0.2 1,559,536 - Psyr_1376 0.27 +0.0 1,559,536 - Psyr_1376 0.27 +0.1 1,559,536 - Psyr_1376 0.27 -0.9 1,559,536 - Psyr_1376 0.27 -0.3 1,559,536 - Psyr_1376 0.27 +0.4 1,559,536 - Psyr_1376 0.27 +0.1 1,559,536 - Psyr_1376 0.27 -1.6 1,559,536 - Psyr_1376 0.27 -0.2 1,559,536 - Psyr_1376 0.27 +0.2 1,559,536 - Psyr_1376 0.27 -0.8 1,559,536 - Psyr_1376 0.27 -0.3 1,559,536 - Psyr_1376 0.27 +1.0 1,559,627 + Psyr_1376 0.31 +0.0 1,559,627 + Psyr_1376 0.31 +0.6 1,559,627 + Psyr_1376 0.31 +0.2 1,559,628 - Psyr_1376 0.31 +0.9 1,559,770 + Psyr_1376 0.36 -0.9 1,559,900 - Psyr_1376 0.41 +1.5 1,559,933 + Psyr_1376 0.43 +0.3 1,559,933 + Psyr_1376 0.43 +0.4 1,559,933 + Psyr_1376 0.43 -0.5 1,559,933 + Psyr_1376 0.43 +1.8 1,559,933 + Psyr_1376 0.43 +0.1 1,559,934 - Psyr_1376 0.43 +0.5 1,559,937 + Psyr_1376 0.43 +0.3 1,559,937 + Psyr_1376 0.43 -0.4 1,559,937 + Psyr_1376 0.43 +1.3 1,559,937 + Psyr_1376 0.43 -0.6 1,559,937 + Psyr_1376 0.43 -0.3 1,559,937 + Psyr_1376 0.43 -0.4 1,559,937 + Psyr_1376 0.43 -0.3 1,559,937 + Psyr_1376 0.43 +0.8 1,559,937 + Psyr_1376 0.43 -0.1 1,559,937 + Psyr_1376 0.43 +0.4 1,559,938 - Psyr_1376 0.43 +0.2 1,559,938 - Psyr_1376 0.43 -0.5 1,559,938 - Psyr_1376 0.43 +0.6 1,559,938 - Psyr_1376 0.43 +1.2 1,559,938 - Psyr_1376 0.43 +0.3 1,559,938 - Psyr_1376 0.43 -0.4 1,559,938 - Psyr_1376 0.43 +0.4 1,559,938 - Psyr_1376 0.43 +0.2 1,559,938 - Psyr_1376 0.43 +0.0 1,559,985 + Psyr_1376 0.45 +1.5 1,559,986 - Psyr_1376 0.45 +0.2 1,560,117 + Psyr_1376 0.50 +1.0 1,560,205 - Psyr_1376 0.53 +1.2 1,560,205 - Psyr_1376 0.53 +3.0 1,560,644 + Psyr_1376 0.70 +0.8 1,560,645 - Psyr_1376 0.70 -0.7 1,560,662 - Psyr_1376 0.71 +1.3 1,560,682 - Psyr_1376 0.72 +0.7 1,561,173 + +0.3 1,561,173 + -0.7 1,561,250 + -1.2 1,561,250 + +0.6 1,561,250 + +0.4 1,561,250 + +0.5 1,561,250 + -1.5 1,561,250 + -0.1 1,561,288 - +1.1 1,561,288 - -0.5 1,561,500 + -0.7 1,561,521 + +1.3 1,561,547 + -0.1 1,561,614 + +1.6 1,561,614 + +1.3 1,561,614 + -2.0 1,561,615 - -0.3 1,561,615 - +0.9 1,561,654 + -0.3 1,561,657 - +0.9 1,561,670 + +0.7 1,561,670 + -0.3 1,561,671 - +0.7 1,561,671 - -0.2 1,561,672 + +0.0 1,561,799 + +0.6 1,561,799 + -0.4 1,561,799 + -0.2 1,561,799 + -0.3 1,561,799 + +2.0 1,561,799 + +2.4 1,561,799 + -0.6 1,561,800 - -1.3 1,561,800 - -0.8 1,561,800 - -0.2 1,561,800 - +0.0 1,561,800 - -0.8 1,561,800 - +0.2 1,561,800 - +0.8 1,561,800 - -0.2 1,561,800 - +1.4 1,561,800 - +0.1 1,561,857 - -1.0 1,561,881 - Psyr_1377 0.13 +0.0 1,561,881 - Psyr_1377 0.13 +1.5 1,561,881 - Psyr_1377 0.13 -1.4 1,562,036 + Psyr_1377 0.39 +0.5 1,562,037 - Psyr_1377 0.40 -0.5 1,562,073 + Psyr_1377 0.46 +0.1 1,562,074 - Psyr_1377 0.46 +3.0 1,562,088 + Psyr_1377 0.48 +0.6 1,562,089 - Psyr_1377 0.49 +1.2 1,562,089 - Psyr_1377 0.49 +0.0 1,562,349 + +0.7 1,562,350 - -1.2
Or see this region's nucleotide sequence