Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0298

Experiment: KB with Curcumin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0296 and Psyr_0297 overlap by 1 nucleotidesPsyr_0297 and Psyr_0298 are separated by 31 nucleotidesPsyr_0298 and Psyr_0299 are separated by 250 nucleotides Psyr_0296: Psyr_0296 - amino acid ABC transporter membrane protein 2, PAAT family, at 316,532 to 317,179 _0296 Psyr_0297: Psyr_0297 - amino acid ABC transporter membrane protein 1, PAAT family, at 317,179 to 317,844 _0297 Psyr_0298: Psyr_0298 - amino acid ABC transporter substrate-binding protein, PAAT family, at 317,876 to 318,661 _0298 Psyr_0299: Psyr_0299 - transcriptional regulator, GntR family, at 318,912 to 319,616 _0299 Position (kb) 317 318 319Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 316.885 kb on - strand, within Psyr_0296at 316.885 kb on - strand, within Psyr_0296at 316.885 kb on - strand, within Psyr_0296at 316.895 kb on - strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.014 kb on + strand, within Psyr_0296at 317.015 kb on - strand, within Psyr_0296at 317.015 kb on - strand, within Psyr_0296at 317.015 kb on - strand, within Psyr_0296at 317.015 kb on - strand, within Psyr_0296at 317.016 kb on + strand, within Psyr_0296at 317.016 kb on + strand, within Psyr_0296at 317.016 kb on + strand, within Psyr_0296at 317.016 kb on + strand, within Psyr_0296at 317.016 kb on + strand, within Psyr_0296at 317.016 kb on + strand, within Psyr_0296at 317.016 kb on + strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.198 kb on + strandat 317.198 kb on + strandat 317.198 kb on + strandat 317.198 kb on + strandat 317.199 kb on - strandat 317.199 kb on - strandat 317.199 kb on - strandat 317.199 kb on - strandat 317.252 kb on + strand, within Psyr_0297at 317.253 kb on - strand, within Psyr_0297at 317.253 kb on - strand, within Psyr_0297at 317.253 kb on - strand, within Psyr_0297at 317.273 kb on + strand, within Psyr_0297at 317.273 kb on + strand, within Psyr_0297at 317.273 kb on + strand, within Psyr_0297at 317.273 kb on + strand, within Psyr_0297at 317.273 kb on + strand, within Psyr_0297at 317.273 kb on + strand, within Psyr_0297at 317.274 kb on - strand, within Psyr_0297at 317.274 kb on - strand, within Psyr_0297at 317.274 kb on - strand, within Psyr_0297at 317.274 kb on - strand, within Psyr_0297at 317.274 kb on - strand, within Psyr_0297at 317.535 kb on - strand, within Psyr_0297at 317.646 kb on + strand, within Psyr_0297at 317.646 kb on + strand, within Psyr_0297at 317.646 kb on + strand, within Psyr_0297at 317.646 kb on + strand, within Psyr_0297at 317.647 kb on - strand, within Psyr_0297at 317.647 kb on - strand, within Psyr_0297at 317.647 kb on - strand, within Psyr_0297at 317.647 kb on - strand, within Psyr_0297at 317.666 kb on + strand, within Psyr_0297at 317.666 kb on + strand, within Psyr_0297at 317.666 kb on + strand, within Psyr_0297at 317.666 kb on + strand, within Psyr_0297at 317.666 kb on + strand, within Psyr_0297at 317.666 kb on + strand, within Psyr_0297at 317.666 kb on + strand, within Psyr_0297at 317.666 kb on + strand, within Psyr_0297at 317.666 kb on + strand, within Psyr_0297at 317.666 kb on + strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.755 kb on + strand, within Psyr_0297at 317.755 kb on + strand, within Psyr_0297at 317.755 kb on + strand, within Psyr_0297at 317.756 kb on - strand, within Psyr_0297at 317.757 kb on + strand, within Psyr_0297at 317.933 kb on - strandat 318.009 kb on + strand, within Psyr_0298at 318.009 kb on + strand, within Psyr_0298at 318.010 kb on - strand, within Psyr_0298at 318.010 kb on - strand, within Psyr_0298at 318.010 kb on - strand, within Psyr_0298at 318.010 kb on - strand, within Psyr_0298at 318.010 kb on - strand, within Psyr_0298at 318.010 kb on - strand, within Psyr_0298at 318.010 kb on - strand, within Psyr_0298at 318.126 kb on + strand, within Psyr_0298at 318.232 kb on + strand, within Psyr_0298at 318.232 kb on + strand, within Psyr_0298at 318.232 kb on + strand, within Psyr_0298at 318.233 kb on - strand, within Psyr_0298at 318.233 kb on - strand, within Psyr_0298at 318.297 kb on + strand, within Psyr_0298at 318.298 kb on - strand, within Psyr_0298at 318.298 kb on - strand, within Psyr_0298at 318.298 kb on - strand, within Psyr_0298at 318.298 kb on - strand, within Psyr_0298at 318.309 kb on + strand, within Psyr_0298at 318.472 kb on + strand, within Psyr_0298at 318.635 kb on - strandat 318.635 kb on - strandat 318.661 kb on + strandat 318.661 kb on + strandat 318.662 kb on - strandat 318.662 kb on - strandat 318.662 kb on - strandat 318.662 kb on - strandat 318.762 kb on + strandat 318.763 kb on - strandat 318.818 kb on + strandat 318.819 kb on - strandat 318.874 kb on - strandat 318.984 kb on + strand, within Psyr_0299at 318.985 kb on - strand, within Psyr_0299at 319.173 kb on + strand, within Psyr_0299at 319.173 kb on + strand, within Psyr_0299at 319.174 kb on - strand, within Psyr_0299at 319.174 kb on - strand, within Psyr_0299at 319.279 kb on + strand, within Psyr_0299at 319.279 kb on + strand, within Psyr_0299at 319.279 kb on + strand, within Psyr_0299at 319.279 kb on + strand, within Psyr_0299at 319.279 kb on + strand, within Psyr_0299at 319.279 kb on + strand, within Psyr_0299at 319.562 kb on + strandat 319.562 kb on + strandat 319.563 kb on - strandat 319.619 kb on + strandat 319.619 kb on + strandat 319.619 kb on + strandat 319.619 kb on + strandat 319.619 kb on + strandat 319.620 kb on - strandat 319.620 kb on - strandat 319.627 kb on + strandat 319.644 kb on + strandat 319.645 kb on - strandat 319.645 kb on - strandat 319.645 kb on - strandat 319.645 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Curcumin 10 mM
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316,885 - Psyr_0296 0.54 +0.1
316,885 - Psyr_0296 0.54 -0.6
316,885 - Psyr_0296 0.54 -0.9
316,895 - Psyr_0296 0.56 -0.4
317,012 + Psyr_0296 0.74 -0.1
317,012 + Psyr_0296 0.74 -0.9
317,012 + Psyr_0296 0.74 +0.1
317,012 + Psyr_0296 0.74 -0.8
317,012 + Psyr_0296 0.74 +0.1
317,012 + Psyr_0296 0.74 -0.5
317,012 + Psyr_0296 0.74 -0.5
317,012 + Psyr_0296 0.74 -3.4
317,012 + Psyr_0296 0.74 -0.9
317,012 + Psyr_0296 0.74 -0.4
317,012 + Psyr_0296 0.74 -0.9
317,012 + Psyr_0296 0.74 -0.6
317,012 + Psyr_0296 0.74 -0.6
317,012 + Psyr_0296 0.74 +1.0
317,012 + Psyr_0296 0.74 -0.3
317,012 + Psyr_0296 0.74 +0.2
317,012 + Psyr_0296 0.74 -1.1
317,012 + Psyr_0296 0.74 +0.6
317,013 - Psyr_0296 0.74 +1.5
317,013 - Psyr_0296 0.74 +1.3
317,013 - Psyr_0296 0.74 +0.3
317,013 - Psyr_0296 0.74 -0.7
317,013 - Psyr_0296 0.74 -0.4
317,013 - Psyr_0296 0.74 -4.2
317,013 - Psyr_0296 0.74 -0.4
317,013 - Psyr_0296 0.74 +1.3
317,013 - Psyr_0296 0.74 -1.2
317,013 - Psyr_0296 0.74 +1.1
317,013 - Psyr_0296 0.74 +0.0
317,013 - Psyr_0296 0.74 -0.2
317,013 - Psyr_0296 0.74 -0.2
317,013 - Psyr_0296 0.74 +0.5
317,014 + Psyr_0296 0.74 -0.7
317,015 - Psyr_0296 0.75 -0.5
317,015 - Psyr_0296 0.75 -1.4
317,015 - Psyr_0296 0.75 +0.7
317,015 - Psyr_0296 0.75 +0.6
317,016 + Psyr_0296 0.75 -1.3
317,016 + Psyr_0296 0.75 -1.2
317,016 + Psyr_0296 0.75 +1.1
317,016 + Psyr_0296 0.75 +0.4
317,016 + Psyr_0296 0.75 +0.3
317,016 + Psyr_0296 0.75 +0.8
317,016 + Psyr_0296 0.75 -1.6
317,017 - Psyr_0296 0.75 +1.2
317,017 - Psyr_0296 0.75 -0.8
317,017 - Psyr_0296 0.75 +0.1
317,017 - Psyr_0296 0.75 -1.0
317,017 - Psyr_0296 0.75 -0.4
317,017 - Psyr_0296 0.75 +1.1
317,017 - Psyr_0296 0.75 -0.1
317,017 - Psyr_0296 0.75 +0.0
317,017 - Psyr_0296 0.75 -1.5
317,017 - Psyr_0296 0.75 -0.3
317,017 - Psyr_0296 0.75 -1.3
317,017 - Psyr_0296 0.75 +0.4
317,017 - Psyr_0296 0.75 -1.0
317,017 - Psyr_0296 0.75 -0.5
317,017 - Psyr_0296 0.75 +0.3
317,198 + +0.1
317,198 + -0.5
317,198 + +0.3
317,198 + +0.4
317,199 - -0.7
317,199 - -0.2
317,199 - +0.1
317,199 - -0.8
317,252 + Psyr_0297 0.11 -0.1
317,253 - Psyr_0297 0.11 +0.9
317,253 - Psyr_0297 0.11 +0.4
317,253 - Psyr_0297 0.11 -0.1
317,273 + Psyr_0297 0.14 -1.1
317,273 + Psyr_0297 0.14 -0.7
317,273 + Psyr_0297 0.14 +2.1
317,273 + Psyr_0297 0.14 -0.2
317,273 + Psyr_0297 0.14 +0.3
317,273 + Psyr_0297 0.14 -0.6
317,274 - Psyr_0297 0.14 -0.7
317,274 - Psyr_0297 0.14 +0.3
317,274 - Psyr_0297 0.14 -0.3
317,274 - Psyr_0297 0.14 +1.2
317,274 - Psyr_0297 0.14 -0.1
317,535 - Psyr_0297 0.53 -0.0
317,646 + Psyr_0297 0.70 +0.8
317,646 + Psyr_0297 0.70 -0.6
317,646 + Psyr_0297 0.70 +0.5
317,646 + Psyr_0297 0.70 -1.4
317,647 - Psyr_0297 0.70 +0.9
317,647 - Psyr_0297 0.70 -0.3
317,647 - Psyr_0297 0.70 +0.1
317,647 - Psyr_0297 0.70 +0.7
317,666 + Psyr_0297 0.73 +0.5
317,666 + Psyr_0297 0.73 -0.2
317,666 + Psyr_0297 0.73 -0.0
317,666 + Psyr_0297 0.73 +0.2
317,666 + Psyr_0297 0.73 +0.8
317,666 + Psyr_0297 0.73 -0.0
317,666 + Psyr_0297 0.73 +0.3
317,666 + Psyr_0297 0.73 +0.4
317,666 + Psyr_0297 0.73 -2.0
317,666 + Psyr_0297 0.73 -0.5
317,667 - Psyr_0297 0.73 +1.8
317,667 - Psyr_0297 0.73 +1.1
317,667 - Psyr_0297 0.73 -0.4
317,667 - Psyr_0297 0.73 -0.4
317,667 - Psyr_0297 0.73 -0.5
317,667 - Psyr_0297 0.73 +0.5
317,667 - Psyr_0297 0.73 +0.4
317,667 - Psyr_0297 0.73 +0.4
317,667 - Psyr_0297 0.73 -0.1
317,667 - Psyr_0297 0.73 +1.1
317,667 - Psyr_0297 0.73 +0.3
317,667 - Psyr_0297 0.73 +1.6
317,667 - Psyr_0297 0.73 +0.7
317,667 - Psyr_0297 0.73 +0.6
317,667 - Psyr_0297 0.73 +1.4
317,667 - Psyr_0297 0.73 -0.2
317,667 - Psyr_0297 0.73 +1.1
317,755 + Psyr_0297 0.86 -1.1
317,755 + Psyr_0297 0.86 +0.5
317,755 + Psyr_0297 0.86 +0.4
317,756 - Psyr_0297 0.87 -0.1
317,757 + Psyr_0297 0.87 -0.2
317,933 - -0.5
318,009 + Psyr_0298 0.17 +1.1
318,009 + Psyr_0298 0.17 -0.5
318,010 - Psyr_0298 0.17 +0.0
318,010 - Psyr_0298 0.17 +0.2
318,010 - Psyr_0298 0.17 +0.4
318,010 - Psyr_0298 0.17 -0.6
318,010 - Psyr_0298 0.17 +1.2
318,010 - Psyr_0298 0.17 +0.8
318,010 - Psyr_0298 0.17 +0.5
318,126 + Psyr_0298 0.32 -0.3
318,232 + Psyr_0298 0.45 +0.6
318,232 + Psyr_0298 0.45 +1.1
318,232 + Psyr_0298 0.45 +0.5
318,233 - Psyr_0298 0.45 +2.0
318,233 - Psyr_0298 0.45 +0.0
318,297 + Psyr_0298 0.54 +1.4
318,298 - Psyr_0298 0.54 +0.1
318,298 - Psyr_0298 0.54 +1.7
318,298 - Psyr_0298 0.54 -0.5
318,298 - Psyr_0298 0.54 +0.2
318,309 + Psyr_0298 0.55 -1.2
318,472 + Psyr_0298 0.76 -0.4
318,635 - +0.5
318,635 - -0.4
318,661 + +0.9
318,661 + -0.4
318,662 - -0.5
318,662 - +0.1
318,662 - -0.9
318,662 - +0.0
318,762 + -0.1
318,763 - +0.1
318,818 + +0.6
318,819 - +3.1
318,874 - -0.2
318,984 + Psyr_0299 0.10 -0.0
318,985 - Psyr_0299 0.10 +0.2
319,173 + Psyr_0299 0.37 +0.3
319,173 + Psyr_0299 0.37 -1.0
319,174 - Psyr_0299 0.37 -0.3
319,174 - Psyr_0299 0.37 +0.3
319,279 + Psyr_0299 0.52 +0.8
319,279 + Psyr_0299 0.52 +0.1
319,279 + Psyr_0299 0.52 -1.1
319,279 + Psyr_0299 0.52 -0.0
319,279 + Psyr_0299 0.52 +1.0
319,279 + Psyr_0299 0.52 +1.4
319,562 + -0.3
319,562 + +0.0
319,563 - +0.2
319,619 + +0.3
319,619 + -1.4
319,619 + +0.4
319,619 + +0.1
319,619 + -0.6
319,620 - -0.4
319,620 - +0.5
319,627 + +0.8
319,644 + +0.5
319,645 - +0.5
319,645 - -0.0
319,645 - -0.3
319,645 - +0.7

Or see this region's nucleotide sequence