Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07675

Experiment: H2 McCas with 1 mM Na2S

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07665 and MMP_RS07670 are separated by 45 nucleotidesMMP_RS07670 and MMP_RS07675 are separated by 105 nucleotidesMMP_RS07675 and MMP_RS07680 are separated by 99 nucleotidesMMP_RS07680 and MMP_RS07685 are separated by 13 nucleotides MMP_RS07665: MMP_RS07665 - amidohydrolase, at 1,451,888 to 1,453,156 _RS07665 MMP_RS07670: MMP_RS07670 - orotate phosphoribosyltransferase, at 1,453,202 to 1,453,759 _RS07670 MMP_RS07675: MMP_RS07675 - S-layer protein, at 1,453,865 to 1,455,208 _RS07675 MMP_RS07680: MMP_RS07680 - DUF366 family protein, at 1,455,308 to 1,455,910 _RS07680 MMP_RS07685: MMP_RS07685 - TIGR01212 family radical SAM protein, at 1,455,924 to 1,456,922 _RS07685 Position (kb) 1453 1454 1455 1456Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1453.034 kb on - strandat 1453.132 kb on - strandat 1453.132 kb on - strandat 1453.148 kb on - strandat 1453.398 kb on + strandat 1453.771 kb on - strandat 1453.795 kb on - strandat 1453.798 kb on + strandat 1453.804 kb on - strandat 1453.815 kb on - strandat 1453.815 kb on - strandat 1453.815 kb on - strandat 1453.817 kb on - strandat 1453.818 kb on + strandat 1453.820 kb on - strandat 1453.821 kb on + strandat 1453.826 kb on + strandat 1453.828 kb on - strandat 1453.828 kb on - strandat 1453.829 kb on + strandat 1453.880 kb on + strandat 1453.888 kb on + strandat 1453.893 kb on - strandat 1453.897 kb on - strandat 1453.903 kb on + strandat 1453.925 kb on + strandat 1453.925 kb on + strandat 1453.925 kb on + strandat 1453.926 kb on - strandat 1453.927 kb on + strandat 1453.932 kb on + strandat 1453.932 kb on + strandat 1453.936 kb on - strandat 1453.936 kb on - strandat 1453.936 kb on - strandat 1453.944 kb on - strandat 1453.945 kb on + strandat 1454.016 kb on + strand, within MMP_RS07675at 1454.018 kb on - strand, within MMP_RS07675at 1454.081 kb on - strand, within MMP_RS07675at 1454.082 kb on + strand, within MMP_RS07675at 1454.082 kb on + strand, within MMP_RS07675at 1454.128 kb on - strand, within MMP_RS07675at 1454.129 kb on + strand, within MMP_RS07675at 1454.166 kb on - strand, within MMP_RS07675at 1454.171 kb on - strand, within MMP_RS07675at 1454.187 kb on + strand, within MMP_RS07675at 1454.255 kb on + strand, within MMP_RS07675at 1454.256 kb on - strand, within MMP_RS07675at 1454.261 kb on - strand, within MMP_RS07675at 1454.261 kb on - strand, within MMP_RS07675at 1454.261 kb on - strand, within MMP_RS07675at 1454.306 kb on + strand, within MMP_RS07675at 1454.311 kb on - strand, within MMP_RS07675at 1454.312 kb on + strand, within MMP_RS07675at 1454.337 kb on - strand, within MMP_RS07675at 1454.338 kb on + strand, within MMP_RS07675at 1454.338 kb on + strand, within MMP_RS07675at 1454.338 kb on + strand, within MMP_RS07675at 1454.338 kb on + strand, within MMP_RS07675at 1454.339 kb on - strand, within MMP_RS07675at 1454.339 kb on - strand, within MMP_RS07675at 1454.340 kb on + strand, within MMP_RS07675at 1454.340 kb on + strand, within MMP_RS07675at 1454.340 kb on + strand, within MMP_RS07675at 1454.341 kb on - strand, within MMP_RS07675at 1454.341 kb on - strand, within MMP_RS07675at 1454.341 kb on - strand, within MMP_RS07675at 1454.341 kb on - strand, within MMP_RS07675at 1454.341 kb on - strand, within MMP_RS07675at 1454.342 kb on + strand, within MMP_RS07675at 1454.342 kb on + strand, within MMP_RS07675at 1454.342 kb on + strand, within MMP_RS07675at 1454.342 kb on + strand, within MMP_RS07675at 1454.382 kb on - strand, within MMP_RS07675at 1454.441 kb on + strand, within MMP_RS07675at 1454.441 kb on + strand, within MMP_RS07675at 1454.444 kb on - strand, within MMP_RS07675at 1454.445 kb on + strand, within MMP_RS07675at 1454.445 kb on + strand, within MMP_RS07675at 1454.445 kb on + strand, within MMP_RS07675at 1454.477 kb on - strand, within MMP_RS07675at 1454.503 kb on - strand, within MMP_RS07675at 1454.573 kb on + strand, within MMP_RS07675at 1454.619 kb on + strand, within MMP_RS07675at 1454.623 kb on - strand, within MMP_RS07675at 1454.659 kb on + strand, within MMP_RS07675at 1454.666 kb on + strand, within MMP_RS07675at 1454.685 kb on - strand, within MMP_RS07675at 1454.686 kb on + strand, within MMP_RS07675at 1454.720 kb on + strand, within MMP_RS07675at 1454.730 kb on - strand, within MMP_RS07675at 1454.735 kb on - strand, within MMP_RS07675at 1454.735 kb on - strand, within MMP_RS07675at 1454.735 kb on - strand, within MMP_RS07675at 1454.735 kb on - strand, within MMP_RS07675at 1454.741 kb on - strand, within MMP_RS07675at 1454.742 kb on + strand, within MMP_RS07675at 1454.746 kb on - strand, within MMP_RS07675at 1454.777 kb on + strand, within MMP_RS07675at 1454.781 kb on - strand, within MMP_RS07675at 1454.781 kb on - strand, within MMP_RS07675at 1454.833 kb on + strand, within MMP_RS07675at 1454.834 kb on - strand, within MMP_RS07675at 1454.843 kb on + strand, within MMP_RS07675at 1454.895 kb on - strand, within MMP_RS07675at 1454.941 kb on + strand, within MMP_RS07675at 1454.944 kb on + strand, within MMP_RS07675at 1455.005 kb on + strand, within MMP_RS07675at 1455.050 kb on + strand, within MMP_RS07675at 1455.276 kb on + strandat 1455.344 kb on + strandat 1455.588 kb on - strand, within MMP_RS07680at 1455.795 kb on - strand, within MMP_RS07680at 1455.817 kb on - strand, within MMP_RS07680at 1455.847 kb on - strand, within MMP_RS07680at 1455.847 kb on - strand, within MMP_RS07680at 1455.914 kb on + strandat 1455.914 kb on + strandat 1456.072 kb on + strand, within MMP_RS07685at 1456.076 kb on + strand, within MMP_RS07685at 1456.158 kb on - strand, within MMP_RS07685at 1456.159 kb on + strand, within MMP_RS07685

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas with 1 mM Na2S
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1,453,034 - -3.1
1,453,132 - -2.1
1,453,132 - -2.9
1,453,148 - -2.9
1,453,398 + -2.9
1,453,771 - -0.4
1,453,795 - -2.5
1,453,798 + -2.7
1,453,804 - -1.6
1,453,815 - -1.6
1,453,815 - -0.5
1,453,815 - -1.6
1,453,817 - +0.2
1,453,818 + -1.5
1,453,820 - -1.3
1,453,821 + -2.4
1,453,826 + -3.8
1,453,828 - -1.1
1,453,828 - -1.1
1,453,829 + -3.0
1,453,880 + +0.6
1,453,888 + +0.5
1,453,893 - +0.5
1,453,897 - +0.6
1,453,903 + +0.9
1,453,925 + +0.3
1,453,925 + +1.2
1,453,925 + +1.2
1,453,926 - +0.2
1,453,927 + +0.3
1,453,932 + +0.1
1,453,932 + +1.0
1,453,936 - +0.4
1,453,936 - +0.4
1,453,936 - +0.4
1,453,944 - -1.4
1,453,945 + -0.2
1,454,016 + MMP_RS07675 0.11 +0.7
1,454,018 - MMP_RS07675 0.11 +0.9
1,454,081 - MMP_RS07675 0.16 +0.9
1,454,082 + MMP_RS07675 0.16 +0.5
1,454,082 + MMP_RS07675 0.16 +0.2
1,454,128 - MMP_RS07675 0.20 +0.1
1,454,129 + MMP_RS07675 0.20 +0.6
1,454,166 - MMP_RS07675 0.22 +0.5
1,454,171 - MMP_RS07675 0.23 +1.2
1,454,187 + MMP_RS07675 0.24 +0.3
1,454,255 + MMP_RS07675 0.29 +0.1
1,454,256 - MMP_RS07675 0.29 +0.2
1,454,261 - MMP_RS07675 0.29 +0.3
1,454,261 - MMP_RS07675 0.29 -0.4
1,454,261 - MMP_RS07675 0.29 +0.1
1,454,306 + MMP_RS07675 0.33 +1.1
1,454,311 - MMP_RS07675 0.33 -0.5
1,454,312 + MMP_RS07675 0.33 +0.7
1,454,337 - MMP_RS07675 0.35 +1.2
1,454,338 + MMP_RS07675 0.35 +0.5
1,454,338 + MMP_RS07675 0.35 +0.9
1,454,338 + MMP_RS07675 0.35 +0.6
1,454,338 + MMP_RS07675 0.35 +1.2
1,454,339 - MMP_RS07675 0.35 +0.0
1,454,339 - MMP_RS07675 0.35 +1.0
1,454,340 + MMP_RS07675 0.35 +0.0
1,454,340 + MMP_RS07675 0.35 -0.1
1,454,340 + MMP_RS07675 0.35 +0.1
1,454,341 - MMP_RS07675 0.35 -0.9
1,454,341 - MMP_RS07675 0.35 +0.8
1,454,341 - MMP_RS07675 0.35 +0.3
1,454,341 - MMP_RS07675 0.35 +0.6
1,454,341 - MMP_RS07675 0.35 +0.4
1,454,342 + MMP_RS07675 0.35 +1.2
1,454,342 + MMP_RS07675 0.35 +0.6
1,454,342 + MMP_RS07675 0.35 -1.8
1,454,342 + MMP_RS07675 0.35 -0.2
1,454,382 - MMP_RS07675 0.38 +0.9
1,454,441 + MMP_RS07675 0.43 +0.8
1,454,441 + MMP_RS07675 0.43 -0.7
1,454,444 - MMP_RS07675 0.43 +0.2
1,454,445 + MMP_RS07675 0.43 +0.7
1,454,445 + MMP_RS07675 0.43 +1.0
1,454,445 + MMP_RS07675 0.43 +0.7
1,454,477 - MMP_RS07675 0.46 +0.2
1,454,503 - MMP_RS07675 0.47 +0.2
1,454,573 + MMP_RS07675 0.53 +0.3
1,454,619 + MMP_RS07675 0.56 -0.2
1,454,623 - MMP_RS07675 0.56 +0.3
1,454,659 + MMP_RS07675 0.59 -0.2
1,454,666 + MMP_RS07675 0.60 +0.9
1,454,685 - MMP_RS07675 0.61 +0.1
1,454,686 + MMP_RS07675 0.61 +0.3
1,454,720 + MMP_RS07675 0.64 +0.6
1,454,730 - MMP_RS07675 0.64 +0.3
1,454,735 - MMP_RS07675 0.65 +0.3
1,454,735 - MMP_RS07675 0.65 +1.0
1,454,735 - MMP_RS07675 0.65 +0.3
1,454,735 - MMP_RS07675 0.65 -0.7
1,454,741 - MMP_RS07675 0.65 +0.1
1,454,742 + MMP_RS07675 0.65 -0.4
1,454,746 - MMP_RS07675 0.66 +0.6
1,454,777 + MMP_RS07675 0.68 +0.5
1,454,781 - MMP_RS07675 0.68 -1.4
1,454,781 - MMP_RS07675 0.68 -2.5
1,454,833 + MMP_RS07675 0.72 +0.8
1,454,834 - MMP_RS07675 0.72 +0.1
1,454,843 + MMP_RS07675 0.73 +0.9
1,454,895 - MMP_RS07675 0.77 +0.6
1,454,941 + MMP_RS07675 0.80 +0.9
1,454,944 + MMP_RS07675 0.80 +0.2
1,455,005 + MMP_RS07675 0.85 -0.3
1,455,050 + MMP_RS07675 0.88 +0.3
1,455,276 + +0.5
1,455,344 + -0.4
1,455,588 - MMP_RS07680 0.46 +1.0
1,455,795 - MMP_RS07680 0.81 +0.7
1,455,817 - MMP_RS07680 0.84 +0.4
1,455,847 - MMP_RS07680 0.89 +0.8
1,455,847 - MMP_RS07680 0.89 -0.4
1,455,914 + -0.6
1,455,914 + -0.2
1,456,072 + MMP_RS07685 0.15 -0.4
1,456,076 + MMP_RS07685 0.15 +0.3
1,456,158 - MMP_RS07685 0.23 -0.6
1,456,159 + MMP_RS07685 0.24 -0.3

Or see this region's nucleotide sequence