Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2966

Experiment: MoYLS4 media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2964 and DvMF_2965 are separated by 203 nucleotidesDvMF_2965 and DvMF_2966 are separated by 172 nucleotidesDvMF_2966 and DvMF_2967 are separated by 184 nucleotides DvMF_2964: DvMF_2964 - RNP-1 like RNA-binding protein (RefSeq), at 3,740,246 to 3,740,512 _2964 DvMF_2965: DvMF_2965 - 17 kDa surface antigen (RefSeq), at 3,740,716 to 3,741,174 _2965 DvMF_2966: DvMF_2966 - hypothetical protein (RefSeq), at 3,741,347 to 3,741,901 _2966 DvMF_2967: DvMF_2967 - RarD protein, DMT superfamily transporter (RefSeq), at 3,742,086 to 3,743,000 _2967 Position (kb) 3741 3742Strain fitness (log2 ratio) -1 0 1 2at 3740.378 kb on + strand, within DvMF_2964at 3740.398 kb on + strand, within DvMF_2964at 3740.482 kb on + strand, within DvMF_2964at 3740.764 kb on - strand, within DvMF_2965at 3740.846 kb on + strand, within DvMF_2965at 3741.196 kb on - strandat 3741.601 kb on - strand, within DvMF_2966at 3741.601 kb on - strand, within DvMF_2966at 3741.617 kb on - strand, within DvMF_2966at 3741.634 kb on + strand, within DvMF_2966at 3741.669 kb on - strand, within DvMF_2966at 3741.916 kb on - strandat 3741.918 kb on + strandat 3742.027 kb on - strandat 3742.143 kb on - strandat 3742.152 kb on + strandat 3742.615 kb on - strand, within DvMF_2967at 3742.757 kb on + strand, within DvMF_2967at 3742.827 kb on - strand, within DvMF_2967

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media
remove
3,740,378 + DvMF_2964 0.49 -0.4
3,740,398 + DvMF_2964 0.57 -0.8
3,740,482 + DvMF_2964 0.88 -0.6
3,740,764 - DvMF_2965 0.10 +2.1
3,740,846 + DvMF_2965 0.28 -1.1
3,741,196 - -0.9
3,741,601 - DvMF_2966 0.46 -1.4
3,741,601 - DvMF_2966 0.46 -0.4
3,741,617 - DvMF_2966 0.49 -0.8
3,741,634 + DvMF_2966 0.52 -1.4
3,741,669 - DvMF_2966 0.58 -1.3
3,741,916 - -0.8
3,741,918 + -0.6
3,742,027 - -0.5
3,742,143 - -1.3
3,742,152 + -0.2
3,742,615 - DvMF_2967 0.58 -0.4
3,742,757 + DvMF_2967 0.73 -0.6
3,742,827 - DvMF_2967 0.81 +0.5

Or see this region's nucleotide sequence