Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2909

Experiment: MoYLS4 media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2908 and DvMF_2909 are separated by 164 nucleotidesDvMF_2909 and DvMF_2910 overlap by 4 nucleotides DvMF_2908: DvMF_2908 - MJ0042 family finger-like protein (RefSeq), at 3,675,060 to 3,676,760 _2908 DvMF_2909: DvMF_2909 - hypothetical protein (RefSeq), at 3,676,925 to 3,678,436 _2909 DvMF_2910: DvMF_2910 - glycosyl transferase group 1 (RefSeq), at 3,678,433 to 3,679,689 _2910 Position (kb) 3676 3677 3678 3679Strain fitness (log2 ratio) -1 0 1at 3676.077 kb on - strand, within DvMF_2908at 3676.757 kb on - strandat 3676.800 kb on - strandat 3676.850 kb on + strandat 3676.853 kb on - strandat 3677.000 kb on + strandat 3677.108 kb on + strand, within DvMF_2909at 3677.113 kb on + strand, within DvMF_2909at 3677.597 kb on + strand, within DvMF_2909at 3678.152 kb on - strand, within DvMF_2909at 3678.247 kb on + strand, within DvMF_2909at 3678.329 kb on + strandat 3678.337 kb on - strandat 3678.589 kb on + strand, within DvMF_2910at 3678.683 kb on + strand, within DvMF_2910at 3679.017 kb on - strand, within DvMF_2910at 3679.075 kb on - strand, within DvMF_2910at 3679.080 kb on - strand, within DvMF_2910at 3679.173 kb on + strand, within DvMF_2910at 3679.189 kb on - strand, within DvMF_2910at 3679.309 kb on + strand, within DvMF_2910at 3679.327 kb on + strand, within DvMF_2910at 3679.357 kb on + strand, within DvMF_2910at 3679.384 kb on + strand, within DvMF_2910

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media
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3,676,077 - DvMF_2908 0.60 -0.2
3,676,757 - -1.1
3,676,800 - +0.0
3,676,850 + -0.7
3,676,853 - -1.7
3,677,000 + -0.3
3,677,108 + DvMF_2909 0.12 -0.1
3,677,113 + DvMF_2909 0.12 -0.1
3,677,597 + DvMF_2909 0.44 +1.0
3,678,152 - DvMF_2909 0.81 -0.1
3,678,247 + DvMF_2909 0.87 +0.6
3,678,329 + +0.5
3,678,337 - -0.3
3,678,589 + DvMF_2910 0.12 +0.4
3,678,683 + DvMF_2910 0.20 +0.1
3,679,017 - DvMF_2910 0.46 -0.3
3,679,075 - DvMF_2910 0.51 -0.2
3,679,080 - DvMF_2910 0.51 -0.3
3,679,173 + DvMF_2910 0.59 -0.4
3,679,189 - DvMF_2910 0.60 -0.7
3,679,309 + DvMF_2910 0.70 -0.4
3,679,327 + DvMF_2910 0.71 -1.3
3,679,357 + DvMF_2910 0.74 -1.5
3,679,384 + DvMF_2910 0.76 -0.4

Or see this region's nucleotide sequence