Experiment: MoYLS4 media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2421 and DvMF_2422 are separated by 97 nucleotides DvMF_2422 and DvMF_2423 overlap by 4 nucleotides DvMF_2423 and DvMF_2424 are separated by 10 nucleotides DvMF_2424 and DvMF_2425 are separated by 83 nucleotides
DvMF_2421: DvMF_2421 - hypothetical protein (RefSeq), at 3,058,804 to 3,059,316
_2421
DvMF_2422: DvMF_2422 - type III secretion low calcium response chaperone LcrH/SycD (RefSeq), at 3,059,414 to 3,059,917
_2422
DvMF_2423: DvMF_2423 - hypothetical protein (RefSeq), at 3,059,914 to 3,060,930
_2423
DvMF_2424: DvMF_2424 - hypothetical protein (RefSeq), at 3,060,941 to 3,061,774
_2424
DvMF_2425: DvMF_2425 - hypothetical protein (RefSeq), at 3,061,858 to 3,062,364
_2425
Position (kb)
3059
3060
3061 Strain fitness (log2 ratio)
-1
0
1 at 3059.228 kb on - strand, within DvMF_2421 at 3059.228 kb on - strand, within DvMF_2421 at 3059.228 kb on - strand, within DvMF_2421 at 3059.238 kb on - strand, within DvMF_2421 at 3059.480 kb on - strand, within DvMF_2422 at 3059.515 kb on + strand, within DvMF_2422 at 3059.875 kb on + strand at 3059.877 kb on - strand at 3059.964 kb on - strand at 3060.044 kb on - strand, within DvMF_2423 at 3060.171 kb on + strand, within DvMF_2423 at 3060.195 kb on + strand, within DvMF_2423 at 3060.260 kb on - strand, within DvMF_2423 at 3060.345 kb on - strand, within DvMF_2423 at 3060.482 kb on - strand, within DvMF_2423 at 3060.715 kb on - strand, within DvMF_2423 at 3061.011 kb on - strand at 3061.125 kb on + strand, within DvMF_2424 at 3061.262 kb on + strand, within DvMF_2424 at 3061.269 kb on - strand, within DvMF_2424 at 3061.382 kb on + strand, within DvMF_2424 at 3061.383 kb on - strand, within DvMF_2424 at 3061.586 kb on - strand, within DvMF_2424 at 3061.736 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media remove 3,059,228 - DvMF_2421 0.83 -0.2 3,059,228 - DvMF_2421 0.83 -0.0 3,059,228 - DvMF_2421 0.83 -1.1 3,059,238 - DvMF_2421 0.85 -0.6 3,059,480 - DvMF_2422 0.13 -0.5 3,059,515 + DvMF_2422 0.20 -0.1 3,059,875 + -0.3 3,059,877 - -0.4 3,059,964 - +0.3 3,060,044 - DvMF_2423 0.13 -0.1 3,060,171 + DvMF_2423 0.25 +0.2 3,060,195 + DvMF_2423 0.28 -0.0 3,060,260 - DvMF_2423 0.34 +0.1 3,060,345 - DvMF_2423 0.42 -0.8 3,060,482 - DvMF_2423 0.56 +0.4 3,060,715 - DvMF_2423 0.79 +0.6 3,061,011 - -0.3 3,061,125 + DvMF_2424 0.22 +0.4 3,061,262 + DvMF_2424 0.38 -0.3 3,061,269 - DvMF_2424 0.39 -0.5 3,061,382 + DvMF_2424 0.53 -0.3 3,061,383 - DvMF_2424 0.53 +0.3 3,061,586 - DvMF_2424 0.77 -0.2 3,061,736 - +0.3
Or see this region's nucleotide sequence