Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2423

Experiment: MoYLS4 media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2421 and DvMF_2422 are separated by 97 nucleotidesDvMF_2422 and DvMF_2423 overlap by 4 nucleotidesDvMF_2423 and DvMF_2424 are separated by 10 nucleotidesDvMF_2424 and DvMF_2425 are separated by 83 nucleotides DvMF_2421: DvMF_2421 - hypothetical protein (RefSeq), at 3,058,804 to 3,059,316 _2421 DvMF_2422: DvMF_2422 - type III secretion low calcium response chaperone LcrH/SycD (RefSeq), at 3,059,414 to 3,059,917 _2422 DvMF_2423: DvMF_2423 - hypothetical protein (RefSeq), at 3,059,914 to 3,060,930 _2423 DvMF_2424: DvMF_2424 - hypothetical protein (RefSeq), at 3,060,941 to 3,061,774 _2424 DvMF_2425: DvMF_2425 - hypothetical protein (RefSeq), at 3,061,858 to 3,062,364 _2425 Position (kb) 3059 3060 3061Strain fitness (log2 ratio) -1 0 1at 3059.228 kb on - strand, within DvMF_2421at 3059.228 kb on - strand, within DvMF_2421at 3059.228 kb on - strand, within DvMF_2421at 3059.238 kb on - strand, within DvMF_2421at 3059.480 kb on - strand, within DvMF_2422at 3059.515 kb on + strand, within DvMF_2422at 3059.875 kb on + strandat 3059.877 kb on - strandat 3059.964 kb on - strandat 3060.044 kb on - strand, within DvMF_2423at 3060.171 kb on + strand, within DvMF_2423at 3060.195 kb on + strand, within DvMF_2423at 3060.260 kb on - strand, within DvMF_2423at 3060.345 kb on - strand, within DvMF_2423at 3060.482 kb on - strand, within DvMF_2423at 3060.715 kb on - strand, within DvMF_2423at 3061.011 kb on - strandat 3061.125 kb on + strand, within DvMF_2424at 3061.262 kb on + strand, within DvMF_2424at 3061.269 kb on - strand, within DvMF_2424at 3061.382 kb on + strand, within DvMF_2424at 3061.383 kb on - strand, within DvMF_2424at 3061.586 kb on - strand, within DvMF_2424at 3061.736 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media
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3,059,228 - DvMF_2421 0.83 -0.2
3,059,228 - DvMF_2421 0.83 -0.0
3,059,228 - DvMF_2421 0.83 -1.1
3,059,238 - DvMF_2421 0.85 -0.6
3,059,480 - DvMF_2422 0.13 -0.5
3,059,515 + DvMF_2422 0.20 -0.1
3,059,875 + -0.3
3,059,877 - -0.4
3,059,964 - +0.3
3,060,044 - DvMF_2423 0.13 -0.1
3,060,171 + DvMF_2423 0.25 +0.2
3,060,195 + DvMF_2423 0.28 -0.0
3,060,260 - DvMF_2423 0.34 +0.1
3,060,345 - DvMF_2423 0.42 -0.8
3,060,482 - DvMF_2423 0.56 +0.4
3,060,715 - DvMF_2423 0.79 +0.6
3,061,011 - -0.3
3,061,125 + DvMF_2424 0.22 +0.4
3,061,262 + DvMF_2424 0.38 -0.3
3,061,269 - DvMF_2424 0.39 -0.5
3,061,382 + DvMF_2424 0.53 -0.3
3,061,383 - DvMF_2424 0.53 +0.3
3,061,586 - DvMF_2424 0.77 -0.2
3,061,736 - +0.3

Or see this region's nucleotide sequence