Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2215

Experiment: MoYLS4 media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2213 and DvMF_2214 are separated by 103 nucleotidesDvMF_2214 and fliP are separated by 139 nucleotidesfliP and DvMF_2216 are separated by 13 nucleotidesDvMF_2216 and DvMF_2217 are separated by 179 nucleotides DvMF_2213: DvMF_2213 - flagellar motor switch protein FliN (RefSeq), at 2,766,541 to 2,767,083 _2213 DvMF_2214: DvMF_2214 - flagellar biosynthesis protein FliO (RefSeq), at 2,767,187 to 2,767,762 _2214 DvMF_2215: fliP - flagellar biosynthesis protein FliP (RefSeq), at 2,767,902 to 2,768,783 fliP DvMF_2216: DvMF_2216 - flagellar biosynthetic protein FliQ (RefSeq), at 2,768,797 to 2,769,066 _2216 DvMF_2217: DvMF_2217 - tRNA/rRNA methyltransferase (SpoU) (RefSeq), at 2,769,246 to 2,770,280 _2217 Position (kb) 2767 2768 2769Strain fitness (log2 ratio) -1 0 1 2at 2766.914 kb on - strand, within DvMF_2213at 2766.916 kb on + strand, within DvMF_2213at 2766.996 kb on + strand, within DvMF_2213at 2767.267 kb on - strand, within DvMF_2214at 2767.427 kb on - strand, within DvMF_2214at 2767.529 kb on - strand, within DvMF_2214at 2767.854 kb on + strandat 2768.096 kb on + strand, within fliPat 2768.133 kb on - strand, within fliPat 2768.133 kb on - strand, within fliPat 2768.136 kb on + strand, within fliPat 2768.299 kb on - strand, within fliPat 2768.315 kb on - strand, within fliPat 2768.466 kb on - strand, within fliPat 2768.575 kb on + strand, within fliPat 2768.892 kb on - strand, within DvMF_2216at 2769.297 kb on - strandat 2769.309 kb on - strandat 2769.353 kb on - strand, within DvMF_2217at 2769.617 kb on - strand, within DvMF_2217

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media
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2,766,914 - DvMF_2213 0.69 +0.6
2,766,916 + DvMF_2213 0.69 +2.0
2,766,996 + DvMF_2213 0.84 +0.9
2,767,267 - DvMF_2214 0.14 +0.8
2,767,427 - DvMF_2214 0.42 +1.1
2,767,529 - DvMF_2214 0.59 +1.0
2,767,854 + +1.2
2,768,096 + fliP DvMF_2215 0.22 +1.3
2,768,133 - fliP DvMF_2215 0.26 +1.2
2,768,133 - fliP DvMF_2215 0.26 +1.3
2,768,136 + fliP DvMF_2215 0.27 +1.2
2,768,299 - fliP DvMF_2215 0.45 +1.0
2,768,315 - fliP DvMF_2215 0.47 +1.2
2,768,466 - fliP DvMF_2215 0.64 +1.4
2,768,575 + fliP DvMF_2215 0.76 +1.4
2,768,892 - DvMF_2216 0.35 +1.4
2,769,297 - -0.6
2,769,309 - -0.5
2,769,353 - DvMF_2217 0.10 -0.7
2,769,617 - DvMF_2217 0.36 -0.4

Or see this region's nucleotide sequence