Experiment: MoYLS4 media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1794 and DvMF_1795 are separated by 51 nucleotides DvMF_1795 and DvMF_1796 are separated by 69 nucleotides DvMF_1796 and DvMF_1797 are separated by 123 nucleotides
DvMF_1794: DvMF_1794 - 3-isopropylmalate dehydrogenase (RefSeq), at 2,194,483 to 2,195,559
_1794
DvMF_1795: DvMF_1795 - hypothetical protein (RefSeq), at 2,195,611 to 2,195,760
_1795
DvMF_1796: DvMF_1796 - hypothetical protein (RefSeq), at 2,195,830 to 2,196,576
_1796
DvMF_1797: DvMF_1797 - molybdenum cofactor synthesis domain protein (RefSeq), at 2,196,700 to 2,198,667
_1797
Position (kb)
2195
2196
2197 Strain fitness (log2 ratio)
-1
0
1 at 2195.112 kb on + strand, within DvMF_1794 at 2195.823 kb on + strand at 2195.898 kb on - strand at 2195.960 kb on - strand, within DvMF_1796 at 2195.998 kb on + strand, within DvMF_1796 at 2196.007 kb on + strand, within DvMF_1796 at 2196.267 kb on + strand, within DvMF_1796 at 2196.427 kb on + strand, within DvMF_1796 at 2196.427 kb on - strand, within DvMF_1796 at 2196.767 kb on + strand at 2196.823 kb on - strand at 2197.062 kb on - strand, within DvMF_1797 at 2197.385 kb on - strand, within DvMF_1797
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media remove 2,195,112 + DvMF_1794 0.58 -0.2 2,195,823 + -0.6 2,195,898 - -0.6 2,195,960 - DvMF_1796 0.17 -0.1 2,195,998 + DvMF_1796 0.22 -1.0 2,196,007 + DvMF_1796 0.24 -0.8 2,196,267 + DvMF_1796 0.59 -0.7 2,196,427 + DvMF_1796 0.80 -0.5 2,196,427 - DvMF_1796 0.80 -0.6 2,196,767 + -0.8 2,196,823 - -0.6 2,197,062 - DvMF_1797 0.18 -0.6 2,197,385 - DvMF_1797 0.35 -0.2
Or see this region's nucleotide sequence