Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1051

Experiment: MoYLS4 media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_R0034 and DvMF_1051 are separated by 604 nucleotidesDvMF_1051 and DvMF_1052 are separated by 327 nucleotides DvMF_R0034: DvMF_R0034 - 16S ribosomal RNA (RefSeq), at 1,281,729 to 1,283,264 _R0034 DvMF_1051: DvMF_1051 - TPR repeat-containing protein (RefSeq), at 1,283,869 to 1,284,516 _1051 DvMF_1052: DvMF_1052 - multi-sensor hybrid histidine kinase (RefSeq), at 1,284,844 to 1,289,943 _1052 Position (kb) 1283 1284 1285Strain fitness (log2 ratio) -1 0 1at 1283.789 kb on - strandat 1283.789 kb on - strandat 1284.126 kb on + strand, within DvMF_1051at 1284.322 kb on - strand, within DvMF_1051at 1284.533 kb on + strandat 1284.533 kb on + strandat 1284.533 kb on + strandat 1284.541 kb on - strandat 1284.541 kb on - strandat 1285.185 kb on + strandat 1285.221 kb on + strandat 1285.229 kb on - strandat 1285.284 kb on - strandat 1285.406 kb on + strand, within DvMF_1052at 1285.423 kb on - strand, within DvMF_1052at 1285.434 kb on + strand, within DvMF_1052at 1285.466 kb on + strand, within DvMF_1052at 1285.509 kb on + strand, within DvMF_1052

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media
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1,283,789 - -1.1
1,283,789 - -0.0
1,284,126 + DvMF_1051 0.40 -1.4
1,284,322 - DvMF_1051 0.70 -0.3
1,284,533 + +0.1
1,284,533 + -0.1
1,284,533 + -0.8
1,284,541 - -0.2
1,284,541 - -0.5
1,285,185 + -1.1
1,285,221 + -1.0
1,285,229 - -1.2
1,285,284 - -0.8
1,285,406 + DvMF_1052 0.11 -0.5
1,285,423 - DvMF_1052 0.11 -0.7
1,285,434 + DvMF_1052 0.12 -0.3
1,285,466 + DvMF_1052 0.12 -0.6
1,285,509 + DvMF_1052 0.13 -0.6

Or see this region's nucleotide sequence