Experiment: MoYLS4 media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0604 and DvMF_0605 overlap by 4 nucleotides DvMF_0605 and DvMF_0606 are separated by 214 nucleotides DvMF_0606 and DvMF_0607 are separated by 243 nucleotides
DvMF_0604: DvMF_0604 - 2-oxoglutarate ferredoxin oxidoreductase subunit beta (RefSeq), at 716,713 to 717,546
_0604
DvMF_0605: DvMF_0605 - pyruvate ferredoxin/flavodoxin oxidoreductase (RefSeq), at 717,543 to 718,166
_0605
DvMF_0606: DvMF_0606 - hypothetical protein (RefSeq), at 718,381 to 718,677
_0606
DvMF_0607: DvMF_0607 - GCN5-related N-acetyltransferase (RefSeq), at 718,921 to 719,877
_0607
Position (kb) 718
719 Strain fitness (log2 ratio) -1
0
1 at 717.401 kb on - strand, within DvMF_0604 at 717.843 kb on + strand, within DvMF_0605 at 717.857 kb on + strand, within DvMF_0605 at 717.980 kb on - strand, within DvMF_0605 at 718.057 kb on + strand, within DvMF_0605 at 718.169 kb on - strand at 718.235 kb on + strand at 718.372 kb on + strand at 718.633 kb on + strand, within DvMF_0606 at 718.642 kb on + strand, within DvMF_0606 at 718.791 kb on + strand at 718.925 kb on - strand at 719.013 kb on - strand at 719.113 kb on + strand, within DvMF_0607 at 719.439 kb on - strand, within DvMF_0607 at 719.544 kb on - strand, within DvMF_0607
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media remove 717,401 - DvMF_0604 0.82 -0.4 717,843 + DvMF_0605 0.48 -0.9 717,857 + DvMF_0605 0.50 -0.2 717,980 - DvMF_0605 0.70 -0.1 718,057 + DvMF_0605 0.82 -0.4 718,169 - -0.5 718,235 + -0.6 718,372 + -0.0 718,633 + DvMF_0606 0.85 +0.3 718,642 + DvMF_0606 0.88 +0.2 718,791 + -0.4 718,925 - -0.5 719,013 - +0.1 719,113 + DvMF_0607 0.20 -0.6 719,439 - DvMF_0607 0.54 -0.3 719,544 - DvMF_0607 0.65 -0.7
Or see this region's nucleotide sequence