Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1811

Experiment: MoLS4 with L-Proline as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnadB and DVU1810 are separated by 110 nucleotidesDVU1810 and DVU1811 are separated by 17 nucleotidesDVU1811 and coxB are separated by 43 nucleotides DVU1809: nadB - L-aspartate oxidase (TIGR), at 1,873,643 to 1,875,229 nadB DVU1810: DVU1810 - hypothetical protein (TIGR), at 1,875,340 to 1,875,762 DVU1810 DVU1811: DVU1811 - protoheme IX farnesyltransferase, putative (TIGR), at 1,875,780 to 1,876,643 DVU1811 DVU1812: coxB - cytochrome c oxidase, subunit II, putative (TIGR), at 1,876,687 to 1,877,967 coxB Position (kb) 1875 1876 1877Strain fitness (log2 ratio) -1 0 1at 1875.300 kb on + strandat 1875.404 kb on + strand, within DVU1810at 1875.608 kb on - strand, within DVU1810at 1875.711 kb on + strand, within DVU1810at 1875.720 kb on + strandat 1875.724 kb on - strandat 1875.786 kb on - strandat 1875.921 kb on - strand, within DVU1811at 1875.931 kb on - strand, within DVU1811at 1876.042 kb on + strand, within DVU1811at 1876.147 kb on - strand, within DVU1811at 1876.149 kb on - strand, within DVU1811at 1876.149 kb on - strand, within DVU1811at 1876.278 kb on + strand, within DVU1811at 1876.343 kb on - strand, within DVU1811at 1876.371 kb on + strand, within DVU1811at 1876.418 kb on - strand, within DVU1811at 1876.419 kb on + strand, within DVU1811at 1876.427 kb on - strand, within DVU1811at 1876.491 kb on + strand, within DVU1811at 1876.628 kb on - strandat 1876.630 kb on + strandat 1876.858 kb on - strand, within coxBat 1876.891 kb on + strand, within coxBat 1876.926 kb on - strand, within coxBat 1876.971 kb on - strand, within coxBat 1877.015 kb on + strand, within coxBat 1877.028 kb on - strand, within coxBat 1877.114 kb on - strand, within coxBat 1877.165 kb on + strand, within coxBat 1877.165 kb on + strand, within coxBat 1877.188 kb on + strand, within coxBat 1877.260 kb on + strand, within coxBat 1877.263 kb on - strand, within coxBat 1877.268 kb on - strand, within coxBat 1877.348 kb on + strand, within coxBat 1877.489 kb on + strand, within coxBat 1877.499 kb on + strand, within coxBat 1877.514 kb on - strand, within coxBat 1877.549 kb on + strand, within coxB

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Proline as nutrient 10mM
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1,875,300 + +0.3
1,875,404 + DVU1810 0.15 -1.3
1,875,608 - DVU1810 0.63 -0.2
1,875,711 + DVU1810 0.88 -0.1
1,875,720 + -1.0
1,875,724 - -0.2
1,875,786 - -1.1
1,875,921 - DVU1811 0.16 +1.4
1,875,931 - DVU1811 0.17 -0.4
1,876,042 + DVU1811 0.30 -0.3
1,876,147 - DVU1811 0.42 -0.1
1,876,149 - DVU1811 0.43 +0.0
1,876,149 - DVU1811 0.43 +0.1
1,876,278 + DVU1811 0.58 +0.9
1,876,343 - DVU1811 0.65 +0.7
1,876,371 + DVU1811 0.68 +0.3
1,876,418 - DVU1811 0.74 -0.1
1,876,419 + DVU1811 0.74 +0.5
1,876,427 - DVU1811 0.75 +0.2
1,876,491 + DVU1811 0.82 -0.1
1,876,628 - -0.2
1,876,630 + +0.7
1,876,858 - coxB DVU1812 0.13 -0.2
1,876,891 + coxB DVU1812 0.16 -1.2
1,876,926 - coxB DVU1812 0.19 +0.2
1,876,971 - coxB DVU1812 0.22 +0.1
1,877,015 + coxB DVU1812 0.26 +0.1
1,877,028 - coxB DVU1812 0.27 +0.1
1,877,114 - coxB DVU1812 0.33 -1.0
1,877,165 + coxB DVU1812 0.37 +1.1
1,877,165 + coxB DVU1812 0.37 +0.1
1,877,188 + coxB DVU1812 0.39 -0.3
1,877,260 + coxB DVU1812 0.45 -0.3
1,877,263 - coxB DVU1812 0.45 -0.3
1,877,268 - coxB DVU1812 0.45 -0.7
1,877,348 + coxB DVU1812 0.52 -1.4
1,877,489 + coxB DVU1812 0.63 +0.9
1,877,499 + coxB DVU1812 0.63 -0.1
1,877,514 - coxB DVU1812 0.65 +0.1
1,877,549 + coxB DVU1812 0.67 +0.3

Or see this region's nucleotide sequence