Experiment: H2 McCas with 1 mM Na2S
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS07600 and MMP_RS07605 are separated by 21 nucleotides MMP_RS07605 and MMP_RS07610 are separated by 113 nucleotides
MMP_RS07600: MMP_RS07600 - Ni-sirohydrochlorin a c-diamide synthase, at 1,438,364 to 1,439,708
_RS07600
MMP_RS07605: MMP_RS07605 - diadenylate cyclase, at 1,439,730 to 1,440,662
_RS07605
MMP_RS07610: MMP_RS07610 - homoaconitase large subunit, at 1,440,776 to 1,442,032
_RS07610
Position (kb)
1439
1440
1441 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1439.154 kb on - strand, within MMP_RS07600 at 1439.180 kb on + strand, within MMP_RS07600 at 1439.487 kb on + strand, within MMP_RS07600 at 1439.545 kb on - strand, within MMP_RS07600 at 1439.574 kb on + strand at 1439.601 kb on + strand at 1439.638 kb on - strand at 1439.639 kb on + strand at 1439.733 kb on + strand at 1439.987 kb on - strand, within MMP_RS07605 at 1439.988 kb on + strand, within MMP_RS07605 at 1440.123 kb on + strand, within MMP_RS07605 at 1440.160 kb on + strand, within MMP_RS07605 at 1440.692 kb on - strand at 1440.693 kb on + strand at 1440.704 kb on + strand at 1440.710 kb on + strand at 1440.725 kb on + strand at 1440.729 kb on - strand at 1440.730 kb on + strand at 1440.749 kb on - strand at 1440.749 kb on - strand at 1440.749 kb on - strand at 1440.749 kb on - strand at 1440.750 kb on + strand at 1440.750 kb on + strand at 1440.750 kb on + strand at 1440.750 kb on + strand at 1441.005 kb on - strand at 1441.335 kb on + strand at 1441.456 kb on - strand at 1441.456 kb on - strand at 1441.462 kb on - strand at 1441.467 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 McCas with 1 mM Na2S remove 1,439,154 - MMP_RS07600 0.59 -1.0 1,439,180 + MMP_RS07600 0.61 -2.4 1,439,487 + MMP_RS07600 0.83 -1.6 1,439,545 - MMP_RS07600 0.88 -2.2 1,439,574 + -0.3 1,439,601 + -4.8 1,439,638 - -2.4 1,439,639 + -2.7 1,439,733 + -2.8 1,439,987 - MMP_RS07605 0.28 -2.3 1,439,988 + MMP_RS07605 0.28 -3.3 1,440,123 + MMP_RS07605 0.42 -3.0 1,440,160 + MMP_RS07605 0.46 -5.3 1,440,692 - +0.5 1,440,693 + +0.8 1,440,704 + +0.4 1,440,710 + +0.7 1,440,725 + -1.4 1,440,729 - -1.1 1,440,730 + +0.5 1,440,749 - -1.0 1,440,749 - -3.0 1,440,749 - +1.6 1,440,749 - -1.2 1,440,750 + -0.3 1,440,750 + +1.2 1,440,750 + -0.6 1,440,750 + -0.0 1,441,005 - -2.4 1,441,335 + -1.6 1,441,456 - -1.7 1,441,456 - -1.8 1,441,462 - -1.9 1,441,467 + -2.7
Or see this region's nucleotide sequence