Experiment: Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.05 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0563 and BT0564 are separated by 11 nucleotides BT0564 and BT0565 are separated by 103 nucleotides BT0565 and BT0566 are separated by 336 nucleotides
BT0563: BT0563 - putative ABC transporter ATP-binding protein or permease protein (NCBI ptt file), at 699,494 to 700,597
BT0563
BT0564: BT0564 - putative ABC transporter permease protein (NCBI ptt file), at 700,609 to 701,724
BT0564
BT0565: BT0565 - putative heat shock protein (NCBI ptt file), at 701,828 to 702,187
BT0565
BT0566: BT0566 - alanyl-tRNA synthetase (NCBI ptt file), at 702,524 to 703,000
BT0566
Position (kb) 700
701
702 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 699.775 kb on - strand, within BT0563 at 699.778 kb on + strand, within BT0563 at 699.819 kb on - strand, within BT0563 at 699.820 kb on + strand, within BT0563 at 699.886 kb on + strand, within BT0563 at 699.887 kb on - strand, within BT0563 at 699.890 kb on + strand, within BT0563 at 699.890 kb on + strand, within BT0563 at 699.980 kb on + strand, within BT0563 at 700.107 kb on + strand, within BT0563 at 700.159 kb on - strand, within BT0563 at 700.164 kb on - strand, within BT0563 at 700.324 kb on + strand, within BT0563 at 700.461 kb on - strand, within BT0563 at 700.529 kb on - strand at 700.529 kb on - strand at 700.558 kb on + strand at 700.608 kb on + strand at 700.734 kb on - strand, within BT0564 at 700.753 kb on - strand, within BT0564 at 700.797 kb on + strand, within BT0564 at 700.812 kb on + strand, within BT0564 at 700.847 kb on - strand, within BT0564 at 700.891 kb on - strand, within BT0564 at 700.950 kb on - strand, within BT0564 at 701.026 kb on + strand, within BT0564 at 701.039 kb on + strand, within BT0564 at 701.226 kb on - strand, within BT0564 at 701.244 kb on + strand, within BT0564 at 701.245 kb on - strand, within BT0564 at 701.297 kb on - strand, within BT0564 at 701.411 kb on + strand, within BT0564 at 701.542 kb on - strand, within BT0564 at 701.570 kb on - strand, within BT0564 at 701.612 kb on + strand, within BT0564 at 701.614 kb on + strand at 701.614 kb on + strand at 701.689 kb on - strand at 701.762 kb on + strand at 702.053 kb on - strand, within BT0565 at 702.257 kb on - strand at 702.270 kb on + strand at 702.385 kb on - strand at 702.580 kb on - strand, within BT0566 at 702.626 kb on + strand, within BT0566 at 702.626 kb on + strand, within BT0566 at 702.627 kb on - strand, within BT0566 at 702.627 kb on - strand, within BT0566 at 702.632 kb on + strand, within BT0566 at 702.633 kb on - strand, within BT0566 at 702.638 kb on + strand, within BT0566 at 702.639 kb on - strand, within BT0566
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.05 vol% remove 699,775 - BT0563 0.25 -0.5 699,778 + BT0563 0.26 -1.1 699,819 - BT0563 0.29 -1.5 699,820 + BT0563 0.30 -0.4 699,886 + BT0563 0.36 -1.0 699,887 - BT0563 0.36 -1.0 699,890 + BT0563 0.36 -1.5 699,890 + BT0563 0.36 -1.8 699,980 + BT0563 0.44 -1.3 700,107 + BT0563 0.56 -1.0 700,159 - BT0563 0.60 -3.9 700,164 - BT0563 0.61 -1.0 700,324 + BT0563 0.75 -1.0 700,461 - BT0563 0.88 +1.0 700,529 - -1.4 700,529 - -2.0 700,558 + +0.0 700,608 + -1.5 700,734 - BT0564 0.11 +1.0 700,753 - BT0564 0.13 -1.0 700,797 + BT0564 0.17 -3.3 700,812 + BT0564 0.18 +0.0 700,847 - BT0564 0.21 -1.0 700,891 - BT0564 0.25 -2.8 700,950 - BT0564 0.31 +0.0 701,026 + BT0564 0.37 -0.4 701,039 + BT0564 0.39 +0.0 701,226 - BT0564 0.55 -1.7 701,244 + BT0564 0.57 -1.0 701,245 - BT0564 0.57 +2.4 701,297 - BT0564 0.62 -2.5 701,411 + BT0564 0.72 -3.3 701,542 - BT0564 0.84 -0.5 701,570 - BT0564 0.86 -3.1 701,612 + BT0564 0.90 -1.0 701,614 + -2.0 701,614 + -1.5 701,689 - -1.0 701,762 + -0.3 702,053 - BT0565 0.62 -1.4 702,257 - -0.9 702,270 + +0.4 702,385 - -0.4 702,580 - BT0566 0.12 +2.4 702,626 + BT0566 0.21 -0.9 702,626 + BT0566 0.21 -1.9 702,627 - BT0566 0.22 -0.9 702,627 - BT0566 0.22 -0.9 702,632 + BT0566 0.23 -1.5 702,633 - BT0566 0.23 +0.1 702,638 + BT0566 0.24 +0.1 702,639 - BT0566 0.24 +0.1
Or see this region's nucleotide sequence