Experiment: Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.05 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0053 and BT0054 are separated by 52 nucleotides BT0054 and BT0055 are separated by 7 nucleotides
BT0053: BT0053 - glycosyltransferase (NCBI ptt file), at 48,834 to 49,958
BT0053
BT0054: BT0054 - putative glycosyltransferase (NCBI ptt file), at 50,011 to 51,132
BT0054
BT0055: BT0055 - putative glycosyltransferase (NCBI ptt file), at 51,140 to 52,255
BT0055
Position (kb) 50
51
52 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 49.021 kb on - strand, within BT0053 at 49.053 kb on - strand, within BT0053 at 49.088 kb on + strand, within BT0053 at 49.109 kb on - strand, within BT0053 at 49.134 kb on - strand, within BT0053 at 49.134 kb on - strand, within BT0053 at 49.348 kb on - strand, within BT0053 at 49.533 kb on - strand, within BT0053 at 49.609 kb on + strand, within BT0053 at 49.692 kb on - strand, within BT0053 at 49.728 kb on - strand, within BT0053 at 49.838 kb on - strand, within BT0053 at 49.878 kb on - strand at 49.963 kb on - strand at 50.003 kb on - strand at 50.099 kb on - strand at 50.115 kb on - strand at 50.139 kb on - strand, within BT0054 at 50.147 kb on + strand, within BT0054 at 50.188 kb on - strand, within BT0054 at 50.188 kb on - strand, within BT0054 at 50.240 kb on - strand, within BT0054 at 50.242 kb on - strand, within BT0054 at 50.242 kb on - strand, within BT0054 at 50.243 kb on + strand, within BT0054 at 50.243 kb on + strand, within BT0054 at 50.286 kb on - strand, within BT0054 at 50.412 kb on - strand, within BT0054 at 50.467 kb on - strand, within BT0054 at 50.467 kb on - strand, within BT0054 at 50.471 kb on + strand, within BT0054 at 50.472 kb on - strand, within BT0054 at 50.472 kb on - strand, within BT0054 at 50.475 kb on - strand, within BT0054 at 50.475 kb on - strand, within BT0054 at 50.540 kb on + strand, within BT0054 at 50.541 kb on - strand, within BT0054 at 50.557 kb on - strand, within BT0054 at 50.609 kb on + strand, within BT0054 at 50.648 kb on + strand, within BT0054 at 50.794 kb on + strand, within BT0054 at 50.797 kb on - strand, within BT0054 at 50.797 kb on - strand, within BT0054 at 50.802 kb on + strand, within BT0054 at 50.816 kb on - strand, within BT0054 at 50.825 kb on - strand, within BT0054 at 50.846 kb on + strand, within BT0054 at 50.943 kb on + strand, within BT0054 at 50.944 kb on - strand, within BT0054 at 50.971 kb on + strand, within BT0054 at 51.036 kb on + strand at 51.037 kb on - strand at 51.080 kb on - strand at 51.080 kb on - strand at 51.080 kb on - strand at 51.168 kb on - strand at 51.211 kb on - strand at 51.217 kb on + strand at 51.355 kb on - strand, within BT0055 at 51.490 kb on - strand, within BT0055 at 51.490 kb on - strand, within BT0055 at 51.532 kb on + strand, within BT0055 at 51.580 kb on - strand, within BT0055 at 51.582 kb on - strand, within BT0055 at 51.586 kb on - strand, within BT0055 at 51.714 kb on + strand, within BT0055 at 51.715 kb on - strand, within BT0055 at 51.715 kb on - strand, within BT0055 at 51.792 kb on - strand, within BT0055 at 51.792 kb on - strand at 51.825 kb on - strand, within BT0055 at 52.027 kb on - strand, within BT0055 at 52.027 kb on - strand, within BT0055
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.05 vol% remove 49,021 - BT0053 0.17 -2.5 49,053 - BT0053 0.19 -1.0 49,088 + BT0053 0.23 -1.5 49,109 - BT0053 0.24 -1.7 49,134 - BT0053 0.27 -0.7 49,134 - BT0053 0.27 +1.0 49,348 - BT0053 0.46 -1.1 49,533 - BT0053 0.62 -0.2 49,609 + BT0053 0.69 +0.0 49,692 - BT0053 0.76 -2.1 49,728 - BT0053 0.79 -1.0 49,838 - BT0053 0.89 +0.0 49,878 - -1.0 49,963 - +0.0 50,003 - -0.8 50,099 - -0.4 50,115 - -1.0 50,139 - BT0054 0.11 -2.3 50,147 + BT0054 0.12 +1.0 50,188 - BT0054 0.16 +0.7 50,188 - BT0054 0.16 -2.0 50,240 - BT0054 0.20 +0.0 50,242 - BT0054 0.21 -0.9 50,242 - BT0054 0.21 -1.5 50,243 + BT0054 0.21 -1.5 50,243 + BT0054 0.21 -0.6 50,286 - BT0054 0.25 +0.6 50,412 - BT0054 0.36 -1.7 50,467 - BT0054 0.41 +1.0 50,467 - BT0054 0.41 -0.3 50,471 + BT0054 0.41 +1.0 50,472 - BT0054 0.41 -1.0 50,472 - BT0054 0.41 -0.8 50,475 - BT0054 0.41 +0.2 50,475 - BT0054 0.41 -1.2 50,540 + BT0054 0.47 -1.0 50,541 - BT0054 0.47 +0.4 50,557 - BT0054 0.49 -2.7 50,609 + BT0054 0.53 -4.3 50,648 + BT0054 0.57 +2.0 50,794 + BT0054 0.70 -2.5 50,797 - BT0054 0.70 -1.0 50,797 - BT0054 0.70 -2.1 50,802 + BT0054 0.70 -1.9 50,816 - BT0054 0.72 -2.0 50,825 - BT0054 0.73 +1.0 50,846 + BT0054 0.74 +0.0 50,943 + BT0054 0.83 -2.4 50,944 - BT0054 0.83 -0.7 50,971 + BT0054 0.86 +1.0 51,036 + +0.6 51,037 - -1.0 51,080 - -0.3 51,080 - -2.8 51,080 - +2.0 51,168 - -4.0 51,211 - -0.8 51,217 + -1.5 51,355 - BT0055 0.19 +0.5 51,490 - BT0055 0.31 -1.0 51,490 - BT0055 0.31 -1.5 51,532 + BT0055 0.35 -2.3 51,580 - BT0055 0.39 +1.3 51,582 - BT0055 0.40 -1.2 51,586 - BT0055 0.40 -1.8 51,714 + BT0055 0.51 -2.0 51,715 - BT0055 0.52 -0.4 51,715 - BT0055 0.52 -1.0 51,792 - BT0055 0.58 +0.0 51,792 - +1.0 51,825 - BT0055 0.61 -0.4 52,027 - BT0055 0.79 -1.0 52,027 - BT0055 0.79 -0.6
Or see this region's nucleotide sequence