Experiment: No grazer flask 3 first outgrowth 150uE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0948 and Synpcc7942_0949 overlap by 1 nucleotides Synpcc7942_0949 and Synpcc7942_0950 overlap by 4 nucleotides Synpcc7942_0950 and nadC are separated by 99 nucleotides
Synpcc7942_0948: Synpcc7942_0948 - permease protein of sugar ABC transporter, at 956,719 to 957,546
_0948
Synpcc7942_0949: Synpcc7942_0949 - permease protein of sugar ABC transporter, at 957,546 to 958,424
_0949
Synpcc7942_0950: Synpcc7942_0950 - putative multiple sugar transport system substrate-binding protein, at 958,421 to 959,737
_0950
Synpcc7942_0951: nadC - nicotinate-nucleotide pyrophosphorylase, at 959,837 to 960,685
nadC
Position (kb) 958
959
960 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 957.421 kb on - strand, within Synpcc7942_0948 at 957.454 kb on - strand, within Synpcc7942_0948 at 957.464 kb on + strand at 957.482 kb on - strand at 957.486 kb on + strand at 957.486 kb on + strand at 957.491 kb on + strand at 957.491 kb on + strand at 957.493 kb on + strand at 957.499 kb on - strand at 957.499 kb on - strand at 957.501 kb on + strand at 957.501 kb on + strand at 957.508 kb on + strand at 957.509 kb on - strand at 957.534 kb on + strand at 957.549 kb on - strand at 957.553 kb on + strand at 957.564 kb on + strand at 957.586 kb on + strand at 957.586 kb on + strand at 957.591 kb on + strand at 957.594 kb on - strand at 957.594 kb on - strand at 957.594 kb on - strand at 957.614 kb on + strand at 957.623 kb on - strand at 957.664 kb on - strand, within Synpcc7942_0949 at 957.669 kb on + strand, within Synpcc7942_0949 at 957.669 kb on - strand, within Synpcc7942_0949 at 957.676 kb on + strand, within Synpcc7942_0949 at 957.678 kb on + strand, within Synpcc7942_0949 at 957.678 kb on + strand, within Synpcc7942_0949 at 957.678 kb on + strand, within Synpcc7942_0949 at 957.684 kb on + strand, within Synpcc7942_0949 at 957.692 kb on + strand, within Synpcc7942_0949 at 957.692 kb on - strand, within Synpcc7942_0949 at 957.692 kb on - strand, within Synpcc7942_0949 at 957.693 kb on - strand, within Synpcc7942_0949 at 957.700 kb on - strand, within Synpcc7942_0949 at 957.700 kb on - strand, within Synpcc7942_0949 at 957.700 kb on - strand, within Synpcc7942_0949 at 957.700 kb on - strand, within Synpcc7942_0949 at 957.707 kb on - strand, within Synpcc7942_0949 at 957.707 kb on - strand, within Synpcc7942_0949 at 957.736 kb on + strand, within Synpcc7942_0949 at 957.744 kb on - strand, within Synpcc7942_0949 at 957.755 kb on + strand, within Synpcc7942_0949 at 957.755 kb on + strand, within Synpcc7942_0949 at 957.757 kb on + strand, within Synpcc7942_0949 at 957.762 kb on + strand, within Synpcc7942_0949 at 957.762 kb on + strand, within Synpcc7942_0949 at 957.763 kb on - strand, within Synpcc7942_0949 at 957.763 kb on - strand, within Synpcc7942_0949 at 957.763 kb on - strand, within Synpcc7942_0949 at 957.770 kb on - strand, within Synpcc7942_0949 at 957.770 kb on - strand, within Synpcc7942_0949 at 957.770 kb on - strand, within Synpcc7942_0949 at 957.770 kb on - strand, within Synpcc7942_0949 at 957.815 kb on - strand, within Synpcc7942_0949 at 957.815 kb on - strand, within Synpcc7942_0949 at 957.816 kb on - strand, within Synpcc7942_0949 at 957.827 kb on + strand, within Synpcc7942_0949 at 957.835 kb on - strand, within Synpcc7942_0949 at 957.839 kb on + strand, within Synpcc7942_0949 at 957.847 kb on - strand, within Synpcc7942_0949 at 957.853 kb on - strand, within Synpcc7942_0949 at 957.854 kb on + strand, within Synpcc7942_0949 at 957.862 kb on - strand, within Synpcc7942_0949 at 957.862 kb on - strand, within Synpcc7942_0949 at 957.862 kb on - strand at 957.862 kb on - strand, within Synpcc7942_0949 at 957.960 kb on + strand, within Synpcc7942_0949 at 957.963 kb on + strand, within Synpcc7942_0949 at 957.963 kb on + strand, within Synpcc7942_0949 at 957.965 kb on + strand, within Synpcc7942_0949 at 957.965 kb on + strand, within Synpcc7942_0949 at 957.965 kb on + strand, within Synpcc7942_0949 at 957.968 kb on - strand, within Synpcc7942_0949 at 957.973 kb on - strand, within Synpcc7942_0949 at 957.973 kb on - strand, within Synpcc7942_0949 at 957.996 kb on + strand, within Synpcc7942_0949 at 958.045 kb on + strand, within Synpcc7942_0949 at 958.074 kb on + strand, within Synpcc7942_0949 at 958.074 kb on + strand, within Synpcc7942_0949 at 958.074 kb on + strand, within Synpcc7942_0949 at 958.082 kb on - strand, within Synpcc7942_0949 at 958.082 kb on - strand, within Synpcc7942_0949 at 958.082 kb on - strand, within Synpcc7942_0949 at 958.082 kb on - strand, within Synpcc7942_0949 at 958.082 kb on - strand, within Synpcc7942_0949 at 958.107 kb on + strand, within Synpcc7942_0949 at 958.141 kb on - strand, within Synpcc7942_0949 at 958.180 kb on + strand, within Synpcc7942_0949 at 958.180 kb on + strand, within Synpcc7942_0949 at 958.225 kb on + strand, within Synpcc7942_0949 at 958.230 kb on - strand, within Synpcc7942_0949 at 958.233 kb on - strand at 958.233 kb on - strand, within Synpcc7942_0949 at 958.235 kb on + strand, within Synpcc7942_0949 at 958.236 kb on - strand, within Synpcc7942_0949 at 958.238 kb on - strand at 958.240 kb on + strand at 958.240 kb on + strand, within Synpcc7942_0949 at 958.240 kb on + strand, within Synpcc7942_0949 at 958.248 kb on - strand, within Synpcc7942_0949 at 958.273 kb on - strand, within Synpcc7942_0949 at 958.287 kb on + strand, within Synpcc7942_0949 at 958.309 kb on + strand, within Synpcc7942_0949 at 958.345 kb on + strand at 958.350 kb on + strand at 958.352 kb on + strand at 958.352 kb on + strand at 958.362 kb on + strand at 958.362 kb on + strand at 958.370 kb on + strand at 958.370 kb on - strand at 958.370 kb on - strand at 958.378 kb on + strand at 958.403 kb on - strand at 958.448 kb on + strand at 958.449 kb on - strand at 958.464 kb on - strand at 958.476 kb on + strand at 958.476 kb on + strand at 958.484 kb on - strand at 958.550 kb on - strand at 958.585 kb on - strand, within Synpcc7942_0950 at 958.623 kb on + strand, within Synpcc7942_0950 at 958.631 kb on - strand, within Synpcc7942_0950 at 958.657 kb on + strand, within Synpcc7942_0950 at 958.684 kb on + strand, within Synpcc7942_0950 at 958.684 kb on + strand, within Synpcc7942_0950 at 958.716 kb on - strand, within Synpcc7942_0950 at 958.718 kb on + strand, within Synpcc7942_0950 at 958.721 kb on - strand, within Synpcc7942_0950 at 958.723 kb on + strand, within Synpcc7942_0950 at 958.723 kb on + strand, within Synpcc7942_0950 at 958.731 kb on - strand, within Synpcc7942_0950 at 958.803 kb on + strand, within Synpcc7942_0950 at 958.811 kb on - strand, within Synpcc7942_0950 at 958.811 kb on - strand, within Synpcc7942_0950 at 958.816 kb on - strand, within Synpcc7942_0950 at 958.820 kb on + strand, within Synpcc7942_0950 at 958.839 kb on + strand, within Synpcc7942_0950 at 958.847 kb on - strand, within Synpcc7942_0950 at 958.858 kb on - strand, within Synpcc7942_0950 at 958.882 kb on - strand, within Synpcc7942_0950 at 958.911 kb on + strand, within Synpcc7942_0950 at 958.915 kb on - strand, within Synpcc7942_0950 at 958.936 kb on + strand, within Synpcc7942_0950 at 958.970 kb on - strand, within Synpcc7942_0950 at 958.970 kb on - strand, within Synpcc7942_0950 at 958.985 kb on - strand, within Synpcc7942_0950 at 959.006 kb on - strand, within Synpcc7942_0950 at 959.029 kb on + strand, within Synpcc7942_0950 at 959.114 kb on + strand, within Synpcc7942_0950 at 959.114 kb on + strand, within Synpcc7942_0950 at 959.114 kb on + strand at 959.122 kb on - strand, within Synpcc7942_0950 at 959.122 kb on - strand, within Synpcc7942_0950 at 959.122 kb on - strand, within Synpcc7942_0950 at 959.129 kb on + strand, within Synpcc7942_0950 at 959.129 kb on - strand, within Synpcc7942_0950 at 959.140 kb on + strand, within Synpcc7942_0950 at 959.140 kb on + strand, within Synpcc7942_0950 at 959.140 kb on + strand, within Synpcc7942_0950 at 959.148 kb on - strand, within Synpcc7942_0950 at 959.148 kb on - strand, within Synpcc7942_0950 at 959.156 kb on + strand, within Synpcc7942_0950 at 959.156 kb on + strand, within Synpcc7942_0950 at 959.158 kb on - strand, within Synpcc7942_0950 at 959.177 kb on + strand, within Synpcc7942_0950 at 959.195 kb on + strand, within Synpcc7942_0950 at 959.219 kb on - strand, within Synpcc7942_0950 at 959.252 kb on - strand, within Synpcc7942_0950 at 959.317 kb on - strand, within Synpcc7942_0950 at 959.317 kb on - strand, within Synpcc7942_0950 at 959.365 kb on + strand, within Synpcc7942_0950 at 959.434 kb on + strand, within Synpcc7942_0950 at 959.442 kb on - strand, within Synpcc7942_0950 at 959.468 kb on - strand, within Synpcc7942_0950 at 959.468 kb on - strand, within Synpcc7942_0950 at 959.505 kb on + strand, within Synpcc7942_0950 at 959.525 kb on + strand, within Synpcc7942_0950 at 959.570 kb on + strand, within Synpcc7942_0950 at 959.645 kb on - strand at 959.645 kb on - strand at 959.645 kb on - strand at 959.645 kb on - strand at 959.661 kb on + strand at 959.661 kb on - strand at 959.661 kb on - strand at 959.666 kb on + strand at 959.692 kb on - strand at 959.698 kb on + strand at 959.724 kb on + strand at 959.745 kb on + strand at 959.745 kb on + strand at 959.745 kb on + strand at 959.745 kb on + strand at 959.753 kb on - strand at 959.753 kb on - strand at 959.753 kb on - strand at 959.753 kb on - strand at 959.753 kb on - strand at 959.753 kb on - strand at 959.772 kb on + strand at 959.782 kb on + strand at 959.790 kb on - strand at 959.790 kb on - strand at 959.819 kb on + strand at 959.847 kb on + strand at 959.850 kb on - strand at 959.921 kb on + strand at 959.922 kb on + strand, within nadC at 959.923 kb on - strand, within nadC at 959.930 kb on - strand, within nadC at 960.002 kb on + strand, within nadC at 960.018 kb on + strand, within nadC at 960.094 kb on + strand, within nadC at 960.103 kb on + strand, within nadC at 960.118 kb on + strand, within nadC at 960.126 kb on - strand, within nadC at 960.126 kb on - strand, within nadC at 960.137 kb on + strand, within nadC at 960.146 kb on - strand, within nadC at 960.265 kb on + strand, within nadC at 960.273 kb on - strand, within nadC at 960.309 kb on + strand, within nadC at 960.435 kb on + strand, within nadC at 960.443 kb on - strand, within nadC at 960.687 kb on + strand at 960.687 kb on + strand at 960.695 kb on - strand at 960.695 kb on - strand at 960.707 kb on - strand at 960.707 kb on - strand at 960.717 kb on - strand at 960.727 kb on - strand at 960.735 kb on + strand at 960.735 kb on + strand at 960.737 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction No grazer flask 3 first outgrowth 150uE remove 957,421 - Synpcc7942_0948 0.85 +0.4 957,454 - Synpcc7942_0948 0.89 -0.4 957,464 + +1.8 957,482 - -0.8 957,486 + +0.2 957,486 + -2.3 957,491 + +0.2 957,491 + -0.7 957,493 + +0.5 957,499 - -0.5 957,499 - +0.7 957,501 + -0.4 957,501 + +0.9 957,508 + -0.9 957,509 - +0.2 957,534 + +0.3 957,549 - +0.7 957,553 + -1.6 957,564 + +0.4 957,586 + +0.2 957,586 + -0.5 957,591 + +0.5 957,594 - -0.2 957,594 - -2.1 957,594 - +0.0 957,614 + +0.2 957,623 - -1.8 957,664 - Synpcc7942_0949 0.13 -0.1 957,669 + Synpcc7942_0949 0.14 +0.8 957,669 - Synpcc7942_0949 0.14 +0.3 957,676 + Synpcc7942_0949 0.15 +0.4 957,678 + Synpcc7942_0949 0.15 +0.9 957,678 + Synpcc7942_0949 0.15 -0.9 957,678 + Synpcc7942_0949 0.15 +0.7 957,684 + Synpcc7942_0949 0.16 +0.0 957,692 + Synpcc7942_0949 0.17 +0.1 957,692 - Synpcc7942_0949 0.17 -0.5 957,692 - Synpcc7942_0949 0.17 -0.3 957,693 - Synpcc7942_0949 0.17 +0.6 957,700 - Synpcc7942_0949 0.18 -0.2 957,700 - Synpcc7942_0949 0.18 -0.8 957,700 - Synpcc7942_0949 0.18 -0.5 957,700 - Synpcc7942_0949 0.18 -1.3 957,707 - Synpcc7942_0949 0.18 -0.3 957,707 - Synpcc7942_0949 0.18 -0.9 957,736 + Synpcc7942_0949 0.22 +0.5 957,744 - Synpcc7942_0949 0.23 -0.7 957,755 + Synpcc7942_0949 0.24 -0.7 957,755 + Synpcc7942_0949 0.24 +0.3 957,757 + Synpcc7942_0949 0.24 +0.5 957,762 + Synpcc7942_0949 0.25 -1.5 957,762 + Synpcc7942_0949 0.25 -0.4 957,763 - Synpcc7942_0949 0.25 -1.3 957,763 - Synpcc7942_0949 0.25 +0.2 957,763 - Synpcc7942_0949 0.25 -1.6 957,770 - Synpcc7942_0949 0.25 +0.7 957,770 - Synpcc7942_0949 0.25 +1.6 957,770 - Synpcc7942_0949 0.25 +0.4 957,770 - Synpcc7942_0949 0.25 -0.3 957,815 - Synpcc7942_0949 0.31 -1.1 957,815 - Synpcc7942_0949 0.31 -0.7 957,816 - Synpcc7942_0949 0.31 -1.8 957,827 + Synpcc7942_0949 0.32 -0.5 957,835 - Synpcc7942_0949 0.33 -0.0 957,839 + Synpcc7942_0949 0.33 +0.5 957,847 - Synpcc7942_0949 0.34 -0.6 957,853 - Synpcc7942_0949 0.35 +0.3 957,854 + Synpcc7942_0949 0.35 -0.6 957,862 - Synpcc7942_0949 0.36 -0.6 957,862 - Synpcc7942_0949 0.36 +0.1 957,862 - +1.7 957,862 - Synpcc7942_0949 0.36 -0.1 957,960 + Synpcc7942_0949 0.47 -3.2 957,963 + Synpcc7942_0949 0.47 -0.1 957,963 + Synpcc7942_0949 0.47 +0.0 957,965 + Synpcc7942_0949 0.48 -0.2 957,965 + Synpcc7942_0949 0.48 -0.3 957,965 + Synpcc7942_0949 0.48 +0.0 957,968 - Synpcc7942_0949 0.48 +0.2 957,973 - Synpcc7942_0949 0.49 -1.6 957,973 - Synpcc7942_0949 0.49 -1.1 957,996 + Synpcc7942_0949 0.51 -0.0 958,045 + Synpcc7942_0949 0.57 -0.3 958,074 + Synpcc7942_0949 0.60 -0.9 958,074 + Synpcc7942_0949 0.60 -0.5 958,074 + Synpcc7942_0949 0.60 +0.7 958,082 - Synpcc7942_0949 0.61 +0.4 958,082 - Synpcc7942_0949 0.61 +1.2 958,082 - Synpcc7942_0949 0.61 +0.6 958,082 - Synpcc7942_0949 0.61 +0.6 958,082 - Synpcc7942_0949 0.61 +0.2 958,107 + Synpcc7942_0949 0.64 -0.4 958,141 - Synpcc7942_0949 0.68 +0.2 958,180 + Synpcc7942_0949 0.72 +0.2 958,180 + Synpcc7942_0949 0.72 -1.4 958,225 + Synpcc7942_0949 0.77 +0.5 958,230 - Synpcc7942_0949 0.78 +0.8 958,233 - +2.1 958,233 - Synpcc7942_0949 0.78 +0.5 958,235 + Synpcc7942_0949 0.78 -0.7 958,236 - Synpcc7942_0949 0.78 -2.4 958,238 - -0.9 958,240 + +0.1 958,240 + Synpcc7942_0949 0.79 +0.6 958,240 + Synpcc7942_0949 0.79 -0.9 958,248 - Synpcc7942_0949 0.80 +0.5 958,273 - Synpcc7942_0949 0.83 -1.3 958,287 + Synpcc7942_0949 0.84 -0.0 958,309 + Synpcc7942_0949 0.87 +0.2 958,345 + -1.2 958,350 + -0.1 958,352 + +0.2 958,352 + +0.5 958,362 + +1.1 958,362 + +0.1 958,370 + -0.6 958,370 - -0.8 958,370 - +0.9 958,378 + +0.1 958,403 - +0.2 958,448 + +0.7 958,449 - -3.0 958,464 - -1.1 958,476 + +0.4 958,476 + -0.7 958,484 - -0.5 958,550 - +0.5 958,585 - Synpcc7942_0950 0.12 +0.2 958,623 + Synpcc7942_0950 0.15 +0.2 958,631 - Synpcc7942_0950 0.16 +0.9 958,657 + Synpcc7942_0950 0.18 +0.6 958,684 + Synpcc7942_0950 0.20 +1.7 958,684 + Synpcc7942_0950 0.20 +0.2 958,716 - Synpcc7942_0950 0.22 -0.7 958,718 + Synpcc7942_0950 0.23 -1.4 958,721 - Synpcc7942_0950 0.23 -0.1 958,723 + Synpcc7942_0950 0.23 -0.7 958,723 + Synpcc7942_0950 0.23 +0.2 958,731 - Synpcc7942_0950 0.24 -0.8 958,803 + Synpcc7942_0950 0.29 -0.2 958,811 - Synpcc7942_0950 0.30 +0.9 958,811 - Synpcc7942_0950 0.30 +0.2 958,816 - Synpcc7942_0950 0.30 -0.2 958,820 + Synpcc7942_0950 0.30 +0.2 958,839 + Synpcc7942_0950 0.32 -0.3 958,847 - Synpcc7942_0950 0.32 -0.5 958,858 - Synpcc7942_0950 0.33 +0.4 958,882 - Synpcc7942_0950 0.35 -0.0 958,911 + Synpcc7942_0950 0.37 +0.1 958,915 - Synpcc7942_0950 0.38 -0.1 958,936 + Synpcc7942_0950 0.39 -0.0 958,970 - Synpcc7942_0950 0.42 -0.6 958,970 - Synpcc7942_0950 0.42 +0.7 958,985 - Synpcc7942_0950 0.43 +0.0 959,006 - Synpcc7942_0950 0.44 +0.1 959,029 + Synpcc7942_0950 0.46 -0.2 959,114 + Synpcc7942_0950 0.53 +0.0 959,114 + Synpcc7942_0950 0.53 -0.5 959,114 + -0.9 959,122 - Synpcc7942_0950 0.53 +0.3 959,122 - Synpcc7942_0950 0.53 -0.3 959,122 - Synpcc7942_0950 0.53 +0.3 959,129 + Synpcc7942_0950 0.54 -0.0 959,129 - Synpcc7942_0950 0.54 +2.3 959,140 + Synpcc7942_0950 0.55 -0.6 959,140 + Synpcc7942_0950 0.55 -0.4 959,140 + Synpcc7942_0950 0.55 -0.6 959,148 - Synpcc7942_0950 0.55 -0.3 959,148 - Synpcc7942_0950 0.55 -0.7 959,156 + Synpcc7942_0950 0.56 +0.8 959,156 + Synpcc7942_0950 0.56 -1.0 959,158 - Synpcc7942_0950 0.56 -1.0 959,177 + Synpcc7942_0950 0.57 -0.2 959,195 + Synpcc7942_0950 0.59 +0.2 959,219 - Synpcc7942_0950 0.61 -0.1 959,252 - Synpcc7942_0950 0.63 -1.7 959,317 - Synpcc7942_0950 0.68 -1.1 959,317 - Synpcc7942_0950 0.68 +0.4 959,365 + Synpcc7942_0950 0.72 +0.0 959,434 + Synpcc7942_0950 0.77 +0.7 959,442 - Synpcc7942_0950 0.78 -1.3 959,468 - Synpcc7942_0950 0.79 +0.3 959,468 - Synpcc7942_0950 0.79 +0.5 959,505 + Synpcc7942_0950 0.82 -0.8 959,525 + Synpcc7942_0950 0.84 -0.9 959,570 + Synpcc7942_0950 0.87 +0.3 959,645 - +0.5 959,645 - -0.2 959,645 - -0.1 959,645 - -0.9 959,661 + +1.3 959,661 - +0.7 959,661 - +1.8 959,666 + -0.1 959,692 - -1.2 959,698 + +1.1 959,724 + +1.1 959,745 + +0.3 959,745 + -1.8 959,745 + +0.6 959,745 + -0.1 959,753 - -0.6 959,753 - +0.2 959,753 - +0.7 959,753 - +2.1 959,753 - -1.0 959,753 - +0.3 959,772 + -0.8 959,782 + -1.5 959,790 - +0.2 959,790 - -0.5 959,819 + -1.4 959,847 + -1.1 959,850 - -2.9 959,921 + -0.1 959,922 + nadC Synpcc7942_0951 0.10 -0.5 959,923 - nadC Synpcc7942_0951 0.10 +0.1 959,930 - nadC Synpcc7942_0951 0.11 -0.9 960,002 + nadC Synpcc7942_0951 0.19 -1.1 960,018 + nadC Synpcc7942_0951 0.21 +0.1 960,094 + nadC Synpcc7942_0951 0.30 -0.9 960,103 + nadC Synpcc7942_0951 0.31 -1.9 960,118 + nadC Synpcc7942_0951 0.33 -0.9 960,126 - nadC Synpcc7942_0951 0.34 -0.7 960,126 - nadC Synpcc7942_0951 0.34 -0.5 960,137 + nadC Synpcc7942_0951 0.35 -0.9 960,146 - nadC Synpcc7942_0951 0.36 -1.6 960,265 + nadC Synpcc7942_0951 0.50 -1.1 960,273 - nadC Synpcc7942_0951 0.51 -2.9 960,309 + nadC Synpcc7942_0951 0.56 -0.5 960,435 + nadC Synpcc7942_0951 0.70 -2.3 960,443 - nadC Synpcc7942_0951 0.71 +0.1 960,687 + +0.5 960,687 + +0.2 960,695 - +0.5 960,695 - -1.1 960,707 - -0.3 960,707 - +1.5 960,717 - -1.7 960,727 - +1.0 960,735 + -1.3 960,735 + -0.9 960,737 + +0.4
Or see this region's nucleotide sequence