Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS11490

Experiment: diet=StandardDiet; sample=FecalPellet; mouse5; day1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS11485 and BBR_RS11490 are separated by 79 nucleotidesBBR_RS11490 and BBR_RS11495 are separated by 71 nucleotides BBR_RS11485: BBR_RS11485 - serine hydrolase, at 333,706 to 335,397 _RS11485 BBR_RS11490: BBR_RS11490 - tRNA-Lys, at 335,477 to 335,552 _RS11490 BBR_RS11495: BBR_RS11495 - dipeptidase, at 335,624 to 337,144 _RS11495 Position (kb) 335 336Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 334.477 kb on - strand, within BBR_RS11485at 334.478 kb on - strand, within BBR_RS11485at 334.488 kb on - strand, within BBR_RS11485at 334.542 kb on - strand, within BBR_RS11485at 334.604 kb on + strand, within BBR_RS11485at 334.604 kb on + strand, within BBR_RS11485at 334.627 kb on + strand, within BBR_RS11485at 334.664 kb on + strand, within BBR_RS11485at 334.666 kb on - strand, within BBR_RS11485at 334.706 kb on + strand, within BBR_RS11485at 334.706 kb on - strand, within BBR_RS11485at 334.713 kb on + strand, within BBR_RS11485at 334.714 kb on - strand, within BBR_RS11485at 334.721 kb on - strand, within BBR_RS11485at 334.731 kb on - strand, within BBR_RS11485at 334.750 kb on - strand, within BBR_RS11485at 334.750 kb on - strand, within BBR_RS11485at 334.762 kb on - strand, within BBR_RS11485at 334.786 kb on - strand, within BBR_RS11485at 334.826 kb on - strand, within BBR_RS11485at 334.846 kb on + strand, within BBR_RS11485at 334.854 kb on - strand, within BBR_RS11485at 334.875 kb on + strand, within BBR_RS11485at 334.878 kb on - strand, within BBR_RS11485at 334.883 kb on - strand, within BBR_RS11485at 334.883 kb on - strand, within BBR_RS11485at 334.903 kb on + strand, within BBR_RS11485at 334.934 kb on - strand, within BBR_RS11485at 334.946 kb on - strand, within BBR_RS11485at 334.959 kb on + strand, within BBR_RS11485at 335.000 kb on - strand, within BBR_RS11485at 335.016 kb on + strand, within BBR_RS11485at 335.021 kb on - strand, within BBR_RS11485at 335.022 kb on + strand, within BBR_RS11485at 335.025 kb on + strand, within BBR_RS11485at 335.039 kb on + strand, within BBR_RS11485at 335.039 kb on + strand, within BBR_RS11485at 335.039 kb on + strand, within BBR_RS11485at 335.078 kb on - strand, within BBR_RS11485at 335.122 kb on + strand, within BBR_RS11485at 335.124 kb on + strand, within BBR_RS11485at 335.130 kb on - strand, within BBR_RS11485at 335.130 kb on - strand, within BBR_RS11485at 335.131 kb on + strand, within BBR_RS11485at 335.132 kb on - strand, within BBR_RS11485at 335.132 kb on - strand, within BBR_RS11485at 335.132 kb on - strand, within BBR_RS11485at 335.132 kb on - strand, within BBR_RS11485at 335.132 kb on - strand, within BBR_RS11485at 335.139 kb on - strand, within BBR_RS11485at 335.170 kb on + strand, within BBR_RS11485at 335.170 kb on + strand, within BBR_RS11485at 335.173 kb on - strand, within BBR_RS11485at 335.178 kb on + strand, within BBR_RS11485at 335.186 kb on - strand, within BBR_RS11485at 335.203 kb on - strand, within BBR_RS11485at 335.203 kb on - strand, within BBR_RS11485at 335.207 kb on - strand, within BBR_RS11485at 335.212 kb on + strand, within BBR_RS11485at 335.218 kb on + strand, within BBR_RS11485at 335.225 kb on + strand, within BBR_RS11485at 335.230 kb on + strandat 335.238 kb on - strandat 335.238 kb on - strandat 335.240 kb on + strandat 335.240 kb on + strandat 335.243 kb on - strandat 335.245 kb on + strandat 335.245 kb on + strandat 335.245 kb on + strandat 335.248 kb on - strandat 335.248 kb on - strandat 335.250 kb on + strandat 335.253 kb on - strandat 335.253 kb on - strandat 335.253 kb on - strandat 335.253 kb on - strandat 335.253 kb on - strandat 335.264 kb on - strandat 335.312 kb on - strandat 335.313 kb on - strandat 335.336 kb on - strandat 335.370 kb on - strandat 335.375 kb on - strandat 335.396 kb on - strandat 335.398 kb on + strandat 335.401 kb on + strandat 335.406 kb on - strandat 335.420 kb on + strandat 335.600 kb on + strandat 335.606 kb on + strandat 335.606 kb on + strandat 335.614 kb on + strandat 335.614 kb on + strandat 335.614 kb on + strandat 335.614 kb on - strandat 335.622 kb on - strandat 335.660 kb on + strandat 335.660 kb on + strandat 335.671 kb on + strandat 335.744 kb on + strandat 335.744 kb on + strandat 335.764 kb on + strandat 335.764 kb on + strandat 335.764 kb on + strandat 335.772 kb on - strandat 335.774 kb on + strandat 335.784 kb on - strand, within BBR_RS11495at 335.815 kb on + strand, within BBR_RS11495at 335.823 kb on + strand, within BBR_RS11495at 335.823 kb on - strand, within BBR_RS11495at 335.823 kb on - strand, within BBR_RS11495at 335.829 kb on + strand, within BBR_RS11495at 335.829 kb on + strand, within BBR_RS11495at 335.829 kb on + strand, within BBR_RS11495at 335.837 kb on + strand, within BBR_RS11495at 335.837 kb on + strand, within BBR_RS11495at 335.837 kb on + strand, within BBR_RS11495at 335.850 kb on + strand, within BBR_RS11495at 335.855 kb on - strand, within BBR_RS11495at 335.863 kb on - strand, within BBR_RS11495at 335.871 kb on + strand, within BBR_RS11495at 335.876 kb on + strand, within BBR_RS11495at 335.884 kb on + strand, within BBR_RS11495at 335.888 kb on + strand, within BBR_RS11495at 335.896 kb on - strand, within BBR_RS11495at 335.903 kb on + strand, within BBR_RS11495at 335.903 kb on + strand, within BBR_RS11495at 335.909 kb on - strand, within BBR_RS11495at 335.909 kb on - strand, within BBR_RS11495at 335.928 kb on - strand, within BBR_RS11495at 335.972 kb on + strand, within BBR_RS11495at 335.975 kb on - strand, within BBR_RS11495at 335.975 kb on - strand, within BBR_RS11495at 336.015 kb on - strand, within BBR_RS11495at 336.038 kb on + strand, within BBR_RS11495at 336.041 kb on - strand, within BBR_RS11495at 336.042 kb on - strand, within BBR_RS11495at 336.057 kb on - strand, within BBR_RS11495at 336.057 kb on - strand, within BBR_RS11495at 336.112 kb on - strand, within BBR_RS11495at 336.122 kb on - strand, within BBR_RS11495at 336.129 kb on + strand, within BBR_RS11495at 336.129 kb on + strand, within BBR_RS11495at 336.141 kb on - strand, within BBR_RS11495at 336.154 kb on + strand, within BBR_RS11495at 336.184 kb on + strand, within BBR_RS11495at 336.184 kb on + strand, within BBR_RS11495at 336.192 kb on - strand, within BBR_RS11495at 336.207 kb on - strand, within BBR_RS11495at 336.236 kb on - strand, within BBR_RS11495at 336.238 kb on + strand, within BBR_RS11495at 336.292 kb on + strand, within BBR_RS11495at 336.298 kb on - strand, within BBR_RS11495at 336.300 kb on + strand, within BBR_RS11495at 336.300 kb on + strand, within BBR_RS11495at 336.300 kb on + strand, within BBR_RS11495at 336.300 kb on + strand, within BBR_RS11495at 336.300 kb on + strand, within BBR_RS11495at 336.308 kb on - strand, within BBR_RS11495at 336.308 kb on - strand, within BBR_RS11495at 336.308 kb on - strand, within BBR_RS11495at 336.308 kb on - strand, within BBR_RS11495at 336.324 kb on - strand, within BBR_RS11495at 336.328 kb on + strand, within BBR_RS11495at 336.329 kb on - strand, within BBR_RS11495at 336.336 kb on - strand, within BBR_RS11495at 336.356 kb on + strand, within BBR_RS11495at 336.376 kb on + strand, within BBR_RS11495at 336.376 kb on + strand, within BBR_RS11495at 336.382 kb on + strand, within BBR_RS11495at 336.383 kb on + strand, within BBR_RS11495at 336.383 kb on + strand, within BBR_RS11495at 336.383 kb on + strand, within BBR_RS11495at 336.421 kb on - strand, within BBR_RS11495at 336.443 kb on - strand, within BBR_RS11495at 336.450 kb on + strand, within BBR_RS11495at 336.450 kb on + strand, within BBR_RS11495at 336.459 kb on - strand, within BBR_RS11495at 336.459 kb on - strand, within BBR_RS11495at 336.490 kb on + strand, within BBR_RS11495at 336.520 kb on - strand, within BBR_RS11495at 336.530 kb on - strand, within BBR_RS11495at 336.541 kb on + strand, within BBR_RS11495at 336.546 kb on + strand, within BBR_RS11495at 336.546 kb on + strand, within BBR_RS11495at 336.546 kb on + strand, within BBR_RS11495at 336.546 kb on + strand, within BBR_RS11495at 336.546 kb on + strand, within BBR_RS11495at 336.546 kb on + strand, within BBR_RS11495

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse5; day1
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334,477 - BBR_RS11485 0.46 +0.0
334,478 - BBR_RS11485 0.46 +1.2
334,488 - BBR_RS11485 0.46 -1.0
334,542 - BBR_RS11485 0.49 +1.1
334,604 + BBR_RS11485 0.53 +1.2
334,604 + BBR_RS11485 0.53 +1.3
334,627 + BBR_RS11485 0.54 -0.5
334,664 + BBR_RS11485 0.57 -0.3
334,666 - BBR_RS11485 0.57 +1.5
334,706 + BBR_RS11485 0.59 -0.1
334,706 - BBR_RS11485 0.59 -1.4
334,713 + BBR_RS11485 0.60 +0.8
334,714 - BBR_RS11485 0.60 +0.7
334,721 - BBR_RS11485 0.60 -1.2
334,731 - BBR_RS11485 0.61 -0.6
334,750 - BBR_RS11485 0.62 +0.1
334,750 - BBR_RS11485 0.62 +0.4
334,762 - BBR_RS11485 0.62 -1.0
334,786 - BBR_RS11485 0.64 -0.9
334,826 - BBR_RS11485 0.66 +0.0
334,846 + BBR_RS11485 0.67 +0.3
334,854 - BBR_RS11485 0.68 -1.2
334,875 + BBR_RS11485 0.69 -0.9
334,878 - BBR_RS11485 0.69 +0.0
334,883 - BBR_RS11485 0.70 +0.6
334,883 - BBR_RS11485 0.70 +2.6
334,903 + BBR_RS11485 0.71 +1.6
334,934 - BBR_RS11485 0.73 -2.3
334,946 - BBR_RS11485 0.73 +0.9
334,959 + BBR_RS11485 0.74 +0.2
335,000 - BBR_RS11485 0.76 +1.6
335,016 + BBR_RS11485 0.77 -1.5
335,021 - BBR_RS11485 0.78 -0.3
335,022 + BBR_RS11485 0.78 -0.1
335,025 + BBR_RS11485 0.78 +0.5
335,039 + BBR_RS11485 0.79 -0.4
335,039 + BBR_RS11485 0.79 -1.5
335,039 + BBR_RS11485 0.79 +0.9
335,078 - BBR_RS11485 0.81 -0.1
335,122 + BBR_RS11485 0.84 -0.4
335,124 + BBR_RS11485 0.84 -0.0
335,130 - BBR_RS11485 0.84 +1.1
335,130 - BBR_RS11485 0.84 +1.1
335,131 + BBR_RS11485 0.84 -1.3
335,132 - BBR_RS11485 0.84 +0.2
335,132 - BBR_RS11485 0.84 -2.5
335,132 - BBR_RS11485 0.84 -2.7
335,132 - BBR_RS11485 0.84 -0.3
335,132 - BBR_RS11485 0.84 -2.0
335,139 - BBR_RS11485 0.85 +1.1
335,170 + BBR_RS11485 0.87 -0.3
335,170 + BBR_RS11485 0.87 +1.7
335,173 - BBR_RS11485 0.87 +0.5
335,178 + BBR_RS11485 0.87 -0.0
335,186 - BBR_RS11485 0.87 -0.3
335,203 - BBR_RS11485 0.88 +1.0
335,203 - BBR_RS11485 0.88 -0.4
335,207 - BBR_RS11485 0.89 +1.2
335,212 + BBR_RS11485 0.89 -0.5
335,218 + BBR_RS11485 0.89 -1.1
335,225 + BBR_RS11485 0.90 +1.3
335,230 + -2.5
335,238 - +1.0
335,238 - -2.0
335,240 + +0.8
335,240 + +1.7
335,243 - +0.3
335,245 + +0.6
335,245 + +0.1
335,245 + -0.7
335,248 - -0.0
335,248 - +1.1
335,250 + -0.3
335,253 - +0.2
335,253 - +2.4
335,253 - -0.4
335,253 - -0.5
335,253 - -0.6
335,264 - +1.5
335,312 - -1.5
335,313 - -2.2
335,336 - -1.5
335,370 - -0.6
335,375 - -0.5
335,396 - +0.7
335,398 + -1.3
335,401 + +1.3
335,406 - -1.1
335,420 + -0.4
335,600 + -0.0
335,606 + +0.0
335,606 + +0.8
335,614 + +0.4
335,614 + -0.2
335,614 + +1.2
335,614 - -0.5
335,622 - -0.1
335,660 + +0.8
335,660 + +0.7
335,671 + +0.6
335,744 + +1.0
335,744 + -0.5
335,764 + -0.1
335,764 + +0.7
335,764 + -2.6
335,772 - +0.2
335,774 + -1.4
335,784 - BBR_RS11495 0.11 -2.9
335,815 + BBR_RS11495 0.13 +1.3
335,823 + BBR_RS11495 0.13 +1.2
335,823 - BBR_RS11495 0.13 +0.3
335,823 - BBR_RS11495 0.13 +2.2
335,829 + BBR_RS11495 0.13 -0.1
335,829 + BBR_RS11495 0.13 +1.3
335,829 + BBR_RS11495 0.13 -0.2
335,837 + BBR_RS11495 0.14 +2.1
335,837 + BBR_RS11495 0.14 +0.1
335,837 + BBR_RS11495 0.14 +0.1
335,850 + BBR_RS11495 0.15 +0.3
335,855 - BBR_RS11495 0.15 -0.2
335,863 - BBR_RS11495 0.16 +1.1
335,871 + BBR_RS11495 0.16 -0.7
335,876 + BBR_RS11495 0.17 +2.0
335,884 + BBR_RS11495 0.17 -3.0
335,888 + BBR_RS11495 0.17 -0.7
335,896 - BBR_RS11495 0.18 -2.0
335,903 + BBR_RS11495 0.18 -2.5
335,903 + BBR_RS11495 0.18 +0.5
335,909 - BBR_RS11495 0.19 -0.7
335,909 - BBR_RS11495 0.19 -0.8
335,928 - BBR_RS11495 0.20 +0.7
335,972 + BBR_RS11495 0.23 -1.7
335,975 - BBR_RS11495 0.23 +0.2
335,975 - BBR_RS11495 0.23 +1.2
336,015 - BBR_RS11495 0.26 -1.3
336,038 + BBR_RS11495 0.27 -0.0
336,041 - BBR_RS11495 0.27 +0.4
336,042 - BBR_RS11495 0.27 +0.2
336,057 - BBR_RS11495 0.28 -0.2
336,057 - BBR_RS11495 0.28 -0.1
336,112 - BBR_RS11495 0.32 +0.7
336,122 - BBR_RS11495 0.33 +0.5
336,129 + BBR_RS11495 0.33 -1.2
336,129 + BBR_RS11495 0.33 +1.2
336,141 - BBR_RS11495 0.34 -0.4
336,154 + BBR_RS11495 0.35 +1.1
336,184 + BBR_RS11495 0.37 +0.8
336,184 + BBR_RS11495 0.37 -1.2
336,192 - BBR_RS11495 0.37 -0.3
336,207 - BBR_RS11495 0.38 -1.9
336,236 - BBR_RS11495 0.40 +0.4
336,238 + BBR_RS11495 0.40 -0.6
336,292 + BBR_RS11495 0.44 +1.0
336,298 - BBR_RS11495 0.44 +0.8
336,300 + BBR_RS11495 0.44 +1.5
336,300 + BBR_RS11495 0.44 +1.2
336,300 + BBR_RS11495 0.44 +2.3
336,300 + BBR_RS11495 0.44 -1.3
336,300 + BBR_RS11495 0.44 -0.1
336,308 - BBR_RS11495 0.45 +0.3
336,308 - BBR_RS11495 0.45 -1.7
336,308 - BBR_RS11495 0.45 -0.2
336,308 - BBR_RS11495 0.45 -0.8
336,324 - BBR_RS11495 0.46 -0.3
336,328 + BBR_RS11495 0.46 +0.8
336,329 - BBR_RS11495 0.46 -1.5
336,336 - BBR_RS11495 0.47 -0.1
336,356 + BBR_RS11495 0.48 -0.8
336,376 + BBR_RS11495 0.49 +0.9
336,376 + BBR_RS11495 0.49 +1.0
336,382 + BBR_RS11495 0.50 -0.2
336,383 + BBR_RS11495 0.50 +0.7
336,383 + BBR_RS11495 0.50 -0.2
336,383 + BBR_RS11495 0.50 +0.2
336,421 - BBR_RS11495 0.52 -0.3
336,443 - BBR_RS11495 0.54 +0.8
336,450 + BBR_RS11495 0.54 +1.5
336,450 + BBR_RS11495 0.54 -0.9
336,459 - BBR_RS11495 0.55 -3.1
336,459 - BBR_RS11495 0.55 -0.2
336,490 + BBR_RS11495 0.57 +0.3
336,520 - BBR_RS11495 0.59 +1.0
336,530 - BBR_RS11495 0.60 -0.1
336,541 + BBR_RS11495 0.60 -2.0
336,546 + BBR_RS11495 0.61 -0.8
336,546 + BBR_RS11495 0.61 +0.3
336,546 + BBR_RS11495 0.61 +0.1
336,546 + BBR_RS11495 0.61 +0.8
336,546 + BBR_RS11495 0.61 +0.5
336,546 + BBR_RS11495 0.61 +0.6

Or see this region's nucleotide sequence