Experiment: MoLS4 with L-Phenylalanine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0145 and DVU0146 are separated by 143 nucleotides DVU0146 and DVU0147 overlap by 4 nucleotides DVU0147 and DVU0148 are separated by 72 nucleotides DVU0148 and DVU0149 are separated by 22 nucleotides
DVU0145: DVU0145 - response regulator (TIGR), at 180,029 to 180,436
DVU0145
DVU0146: DVU0146 - hypothetical protein (TIGR), at 180,580 to 181,389
DVU0146
DVU0147: DVU0147 - lipoprotein, putative (TIGR), at 181,386 to 181,646
DVU0147
DVU0148: DVU0148 - lipoprotein, putative (TIGR), at 181,719 to 182,330
DVU0148
DVU0149: DVU0149 - membrane protein, putative (TIGR), at 182,353 to 183,405
DVU0149
Position (kb) 181
182 Strain fitness (log2 ratio) -2
-1
0
1 at 180.411 kb on - strand at 180.415 kb on + strand at 180.622 kb on + strand at 180.739 kb on - strand, within DVU0146 at 180.779 kb on - strand, within DVU0146 at 180.791 kb on + strand, within DVU0146 at 180.833 kb on + strand, within DVU0146 at 180.839 kb on - strand, within DVU0146 at 180.862 kb on + strand, within DVU0146 at 180.985 kb on + strand, within DVU0146 at 181.127 kb on - strand, within DVU0146 at 181.188 kb on + strand, within DVU0146 at 181.202 kb on + strand, within DVU0146 at 181.202 kb on + strand, within DVU0146 at 181.220 kb on - strand, within DVU0146 at 181.260 kb on + strand, within DVU0146 at 181.312 kb on + strand at 181.378 kb on + strand at 181.386 kb on - strand at 181.387 kb on + strand at 181.471 kb on - strand, within DVU0147 at 181.485 kb on - strand, within DVU0147 at 181.535 kb on + strand, within DVU0147 at 181.539 kb on + strand, within DVU0147 at 181.565 kb on - strand, within DVU0147 at 181.610 kb on - strand, within DVU0147 at 181.613 kb on - strand, within DVU0147 at 181.625 kb on + strand at 181.654 kb on - strand at 181.684 kb on + strand at 181.758 kb on + strand at 181.769 kb on - strand at 181.836 kb on + strand, within DVU0148 at 181.836 kb on + strand, within DVU0148 at 181.869 kb on + strand, within DVU0148 at 181.892 kb on - strand, within DVU0148 at 181.926 kb on + strand, within DVU0148 at 181.985 kb on + strand, within DVU0148 at 182.022 kb on + strand, within DVU0148 at 182.029 kb on + strand, within DVU0148 at 182.036 kb on + strand, within DVU0148 at 182.061 kb on - strand, within DVU0148 at 182.061 kb on - strand, within DVU0148 at 182.089 kb on + strand, within DVU0148 at 182.137 kb on - strand, within DVU0148 at 182.158 kb on - strand, within DVU0148 at 182.206 kb on + strand, within DVU0148 at 182.206 kb on + strand, within DVU0148 at 182.206 kb on + strand, within DVU0148 at 182.206 kb on + strand, within DVU0148 at 182.214 kb on - strand, within DVU0148 at 182.214 kb on - strand, within DVU0148 at 182.214 kb on - strand, within DVU0148 at 182.214 kb on - strand, within DVU0148 at 182.214 kb on - strand, within DVU0148 at 182.290 kb on - strand at 182.333 kb on - strand at 182.379 kb on - strand at 182.390 kb on + strand at 182.397 kb on - strand at 182.402 kb on - strand at 182.436 kb on + strand at 182.444 kb on - strand at 182.474 kb on + strand, within DVU0149 at 182.474 kb on + strand, within DVU0149 at 182.482 kb on - strand, within DVU0149 at 182.482 kb on - strand, within DVU0149 at 182.482 kb on - strand, within DVU0149 at 182.515 kb on + strand, within DVU0149
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Phenylalanine as nutrient 10mM remove 180,411 - -0.1 180,415 + -1.3 180,622 + -0.0 180,739 - DVU0146 0.20 +0.0 180,779 - DVU0146 0.25 +0.2 180,791 + DVU0146 0.26 +0.2 180,833 + DVU0146 0.31 +0.1 180,839 - DVU0146 0.32 +0.2 180,862 + DVU0146 0.35 +0.3 180,985 + DVU0146 0.50 -0.4 181,127 - DVU0146 0.68 -0.0 181,188 + DVU0146 0.75 -0.3 181,202 + DVU0146 0.77 +1.6 181,202 + DVU0146 0.77 -0.1 181,220 - DVU0146 0.79 +0.2 181,260 + DVU0146 0.84 -0.5 181,312 + -1.3 181,378 + -0.1 181,386 - -0.2 181,387 + -0.1 181,471 - DVU0147 0.33 -0.5 181,485 - DVU0147 0.38 -1.1 181,535 + DVU0147 0.57 -0.1 181,539 + DVU0147 0.59 -0.1 181,565 - DVU0147 0.69 +1.2 181,610 - DVU0147 0.86 -0.6 181,613 - DVU0147 0.87 -0.2 181,625 + +1.2 181,654 - -0.2 181,684 + -0.2 181,758 + -0.4 181,769 - +0.0 181,836 + DVU0148 0.19 +0.6 181,836 + DVU0148 0.19 +0.2 181,869 + DVU0148 0.25 +0.0 181,892 - DVU0148 0.28 -1.3 181,926 + DVU0148 0.34 -0.5 181,985 + DVU0148 0.43 -0.1 182,022 + DVU0148 0.50 -0.5 182,029 + DVU0148 0.51 -0.2 182,036 + DVU0148 0.52 -0.7 182,061 - DVU0148 0.56 -0.6 182,061 - DVU0148 0.56 +0.0 182,089 + DVU0148 0.60 -0.7 182,137 - DVU0148 0.68 -0.1 182,158 - DVU0148 0.72 +1.6 182,206 + DVU0148 0.80 +0.3 182,206 + DVU0148 0.80 -0.5 182,206 + DVU0148 0.80 -0.5 182,206 + DVU0148 0.80 +0.2 182,214 - DVU0148 0.81 +0.0 182,214 - DVU0148 0.81 -0.7 182,214 - DVU0148 0.81 -0.1 182,214 - DVU0148 0.81 +0.1 182,214 - DVU0148 0.81 -0.7 182,290 - -0.2 182,333 - +0.6 182,379 - +0.2 182,390 + -0.3 182,397 - -0.4 182,402 - -1.3 182,436 + -0.6 182,444 - -0.4 182,474 + DVU0149 0.11 -0.6 182,474 + DVU0149 0.11 -0.6 182,482 - DVU0149 0.12 -2.3 182,482 - DVU0149 0.12 -0.2 182,482 - DVU0149 0.12 -0.5 182,515 + DVU0149 0.15 -0.1
Or see this region's nucleotide sequence