Experiment: No grazer flask 2 first outgrowth 150uE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lpxB and narM are separated by 17 nucleotides narM and Synpcc7942_0934 are separated by 69 nucleotides Synpcc7942_0934 and Synpcc7942_0935 are separated by 11 nucleotides Synpcc7942_0935 and Synpcc7942_0936 are separated by 4 nucleotides
Synpcc7942_0932: lpxB - lipid-A-disaccharide synthase, at 939,193 to 940,392
lpxB
Synpcc7942_0933: narM - hypothetical protein, at 940,410 to 940,925
narM
Synpcc7942_0934: Synpcc7942_0934 - hypothetical protein, at 940,995 to 942,056
_0934
Synpcc7942_0935: Synpcc7942_0935 - hypothetical protein, at 942,068 to 942,838
_0935
Synpcc7942_0936: Synpcc7942_0936 - Rhodanese-like, at 942,843 to 943,388
_0936
Position (kb) 940
941
942
943 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 940.395 kb on + strand at 940.889 kb on - strand at 940.908 kb on + strand at 940.949 kb on - strand at 941.008 kb on + strand at 941.020 kb on + strand at 941.020 kb on + strand at 941.066 kb on + strand at 941.066 kb on + strand at 941.085 kb on - strand at 941.123 kb on + strand, within Synpcc7942_0934 at 941.131 kb on - strand, within Synpcc7942_0934 at 941.200 kb on - strand, within Synpcc7942_0934 at 941.200 kb on - strand, within Synpcc7942_0934 at 941.217 kb on + strand, within Synpcc7942_0934 at 941.236 kb on - strand, within Synpcc7942_0934 at 941.250 kb on + strand, within Synpcc7942_0934 at 941.250 kb on + strand, within Synpcc7942_0934 at 941.250 kb on + strand, within Synpcc7942_0934 at 941.255 kb on + strand, within Synpcc7942_0934 at 941.258 kb on - strand, within Synpcc7942_0934 at 941.258 kb on - strand, within Synpcc7942_0934 at 941.369 kb on + strand, within Synpcc7942_0934 at 941.377 kb on - strand, within Synpcc7942_0934 at 941.381 kb on + strand, within Synpcc7942_0934 at 941.405 kb on + strand, within Synpcc7942_0934 at 941.431 kb on + strand, within Synpcc7942_0934 at 941.462 kb on + strand, within Synpcc7942_0934 at 941.462 kb on + strand, within Synpcc7942_0934 at 941.462 kb on + strand, within Synpcc7942_0934 at 941.466 kb on + strand, within Synpcc7942_0934 at 941.472 kb on + strand, within Synpcc7942_0934 at 941.506 kb on + strand, within Synpcc7942_0934 at 941.513 kb on + strand, within Synpcc7942_0934 at 941.521 kb on - strand, within Synpcc7942_0934 at 941.540 kb on - strand at 941.583 kb on + strand, within Synpcc7942_0934 at 941.658 kb on - strand, within Synpcc7942_0934 at 941.699 kb on - strand, within Synpcc7942_0934 at 941.712 kb on - strand, within Synpcc7942_0934 at 941.800 kb on - strand, within Synpcc7942_0934 at 941.803 kb on + strand, within Synpcc7942_0934 at 941.845 kb on - strand, within Synpcc7942_0934 at 941.847 kb on + strand, within Synpcc7942_0934 at 941.847 kb on + strand, within Synpcc7942_0934 at 941.847 kb on + strand, within Synpcc7942_0934 at 941.847 kb on + strand, within Synpcc7942_0934 at 941.847 kb on + strand, within Synpcc7942_0934 at 941.894 kb on + strand, within Synpcc7942_0934 at 941.912 kb on - strand, within Synpcc7942_0934 at 941.946 kb on - strand at 941.957 kb on + strand at 941.965 kb on - strand at 942.024 kb on + strand at 942.058 kb on - strand at 942.058 kb on - strand at 942.095 kb on - strand at 942.097 kb on - strand at 942.112 kb on + strand at 942.130 kb on + strand at 942.140 kb on - strand at 942.144 kb on + strand at 942.155 kb on + strand, within Synpcc7942_0935 at 942.170 kb on + strand, within Synpcc7942_0935 at 942.171 kb on + strand, within Synpcc7942_0935 at 942.178 kb on - strand, within Synpcc7942_0935 at 942.179 kb on - strand, within Synpcc7942_0935 at 942.188 kb on - strand, within Synpcc7942_0935 at 942.191 kb on + strand, within Synpcc7942_0935 at 942.199 kb on + strand, within Synpcc7942_0935 at 942.199 kb on - strand, within Synpcc7942_0935 at 942.214 kb on - strand, within Synpcc7942_0935 at 942.219 kb on + strand, within Synpcc7942_0935 at 942.219 kb on + strand, within Synpcc7942_0935 at 942.227 kb on - strand, within Synpcc7942_0935 at 942.227 kb on - strand, within Synpcc7942_0935 at 942.229 kb on + strand, within Synpcc7942_0935 at 942.229 kb on + strand, within Synpcc7942_0935 at 942.229 kb on + strand, within Synpcc7942_0935 at 942.248 kb on - strand, within Synpcc7942_0935 at 942.259 kb on - strand at 942.283 kb on + strand, within Synpcc7942_0935 at 942.286 kb on + strand, within Synpcc7942_0935 at 942.319 kb on - strand, within Synpcc7942_0935 at 942.329 kb on - strand, within Synpcc7942_0935 at 942.361 kb on + strand, within Synpcc7942_0935 at 942.366 kb on + strand, within Synpcc7942_0935 at 942.379 kb on - strand, within Synpcc7942_0935 at 942.388 kb on + strand, within Synpcc7942_0935 at 942.394 kb on + strand, within Synpcc7942_0935 at 942.410 kb on + strand, within Synpcc7942_0935 at 942.460 kb on - strand, within Synpcc7942_0935 at 942.460 kb on - strand, within Synpcc7942_0935 at 942.493 kb on + strand, within Synpcc7942_0935 at 942.494 kb on - strand, within Synpcc7942_0935 at 942.501 kb on - strand, within Synpcc7942_0935 at 942.501 kb on - strand, within Synpcc7942_0935 at 942.560 kb on + strand, within Synpcc7942_0935 at 942.576 kb on - strand, within Synpcc7942_0935 at 942.590 kb on + strand, within Synpcc7942_0935 at 942.590 kb on - strand, within Synpcc7942_0935 at 942.599 kb on - strand, within Synpcc7942_0935 at 942.614 kb on + strand, within Synpcc7942_0935 at 942.619 kb on + strand, within Synpcc7942_0935 at 942.619 kb on - strand, within Synpcc7942_0935 at 942.624 kb on + strand, within Synpcc7942_0935 at 942.624 kb on + strand, within Synpcc7942_0935 at 942.624 kb on + strand at 942.632 kb on - strand, within Synpcc7942_0935 at 942.632 kb on - strand, within Synpcc7942_0935 at 942.632 kb on - strand, within Synpcc7942_0935 at 942.647 kb on - strand, within Synpcc7942_0935 at 942.661 kb on + strand, within Synpcc7942_0935 at 942.679 kb on - strand, within Synpcc7942_0935 at 942.694 kb on + strand, within Synpcc7942_0935 at 942.694 kb on + strand, within Synpcc7942_0935 at 942.739 kb on + strand, within Synpcc7942_0935 at 942.766 kb on - strand at 942.787 kb on + strand at 942.801 kb on - strand at 942.814 kb on - strand at 942.828 kb on + strand at 942.831 kb on - strand at 942.848 kb on - strand at 942.849 kb on - strand at 942.895 kb on + strand at 942.912 kb on + strand, within Synpcc7942_0936 at 942.912 kb on + strand at 942.912 kb on + strand, within Synpcc7942_0936 at 942.917 kb on + strand, within Synpcc7942_0936 at 942.920 kb on - strand, within Synpcc7942_0936 at 942.929 kb on + strand, within Synpcc7942_0936 at 942.941 kb on + strand, within Synpcc7942_0936 at 942.947 kb on + strand, within Synpcc7942_0936 at 942.958 kb on - strand, within Synpcc7942_0936 at 942.971 kb on - strand, within Synpcc7942_0936 at 942.974 kb on + strand, within Synpcc7942_0936 at 942.984 kb on + strand, within Synpcc7942_0936 at 942.992 kb on - strand, within Synpcc7942_0936 at 943.004 kb on - strand, within Synpcc7942_0936 at 943.005 kb on + strand, within Synpcc7942_0936 at 943.027 kb on + strand, within Synpcc7942_0936 at 943.046 kb on - strand, within Synpcc7942_0936
Per-strain Table
Position Strand Gene LocusTag Fraction No grazer flask 2 first outgrowth 150uE remove 940,395 + +0.4 940,889 - +0.4 940,908 + -0.2 940,949 - +0.2 941,008 + -1.4 941,020 + -0.8 941,020 + -2.5 941,066 + -1.1 941,066 + -1.0 941,085 - -1.5 941,123 + Synpcc7942_0934 0.12 -0.8 941,131 - Synpcc7942_0934 0.13 -0.4 941,200 - Synpcc7942_0934 0.19 -0.9 941,200 - Synpcc7942_0934 0.19 -1.5 941,217 + Synpcc7942_0934 0.21 -0.6 941,236 - Synpcc7942_0934 0.23 -1.4 941,250 + Synpcc7942_0934 0.24 -3.3 941,250 + Synpcc7942_0934 0.24 -0.2 941,250 + Synpcc7942_0934 0.24 -2.1 941,255 + Synpcc7942_0934 0.24 -1.4 941,258 - Synpcc7942_0934 0.25 -1.0 941,258 - Synpcc7942_0934 0.25 -3.7 941,369 + Synpcc7942_0934 0.35 -0.2 941,377 - Synpcc7942_0934 0.36 -1.4 941,381 + Synpcc7942_0934 0.36 -0.2 941,405 + Synpcc7942_0934 0.39 -0.2 941,431 + Synpcc7942_0934 0.41 -4.0 941,462 + Synpcc7942_0934 0.44 -1.1 941,462 + Synpcc7942_0934 0.44 -1.7 941,462 + Synpcc7942_0934 0.44 +0.0 941,466 + Synpcc7942_0934 0.44 -2.1 941,472 + Synpcc7942_0934 0.45 -2.3 941,506 + Synpcc7942_0934 0.48 -2.8 941,513 + Synpcc7942_0934 0.49 -1.9 941,521 - Synpcc7942_0934 0.50 -1.7 941,540 - -0.2 941,583 + Synpcc7942_0934 0.55 +1.1 941,658 - Synpcc7942_0934 0.62 -1.5 941,699 - Synpcc7942_0934 0.66 +0.8 941,712 - Synpcc7942_0934 0.68 -0.1 941,800 - Synpcc7942_0934 0.76 -0.5 941,803 + Synpcc7942_0934 0.76 -2.3 941,845 - Synpcc7942_0934 0.80 -1.1 941,847 + Synpcc7942_0934 0.80 -1.1 941,847 + Synpcc7942_0934 0.80 -1.6 941,847 + Synpcc7942_0934 0.80 -1.4 941,847 + Synpcc7942_0934 0.80 -1.4 941,847 + Synpcc7942_0934 0.80 -1.3 941,894 + Synpcc7942_0934 0.85 +0.9 941,912 - Synpcc7942_0934 0.86 -0.9 941,946 - -0.1 941,957 + -1.2 941,965 - -1.8 942,024 + +0.9 942,058 - -2.3 942,058 - -0.7 942,095 - +0.3 942,097 - +0.1 942,112 + +0.1 942,130 + +0.5 942,140 - -1.4 942,144 + -0.5 942,155 + Synpcc7942_0935 0.11 -0.9 942,170 + Synpcc7942_0935 0.13 -0.1 942,171 + Synpcc7942_0935 0.13 -0.2 942,178 - Synpcc7942_0935 0.14 -0.7 942,179 - Synpcc7942_0935 0.14 -0.2 942,188 - Synpcc7942_0935 0.16 -0.1 942,191 + Synpcc7942_0935 0.16 -0.3 942,199 + Synpcc7942_0935 0.17 +0.0 942,199 - Synpcc7942_0935 0.17 +0.2 942,214 - Synpcc7942_0935 0.19 +1.2 942,219 + Synpcc7942_0935 0.20 +0.7 942,219 + Synpcc7942_0935 0.20 -0.1 942,227 - Synpcc7942_0935 0.21 +1.0 942,227 - Synpcc7942_0935 0.21 -0.1 942,229 + Synpcc7942_0935 0.21 +0.6 942,229 + Synpcc7942_0935 0.21 -3.3 942,229 + Synpcc7942_0935 0.21 +0.1 942,248 - Synpcc7942_0935 0.23 +0.3 942,259 - +1.2 942,283 + Synpcc7942_0935 0.28 -0.1 942,286 + Synpcc7942_0935 0.28 +0.1 942,319 - Synpcc7942_0935 0.33 -1.0 942,329 - Synpcc7942_0935 0.34 -0.7 942,361 + Synpcc7942_0935 0.38 -1.6 942,366 + Synpcc7942_0935 0.39 -1.0 942,379 - Synpcc7942_0935 0.40 -0.1 942,388 + Synpcc7942_0935 0.42 +0.6 942,394 + Synpcc7942_0935 0.42 -0.1 942,410 + Synpcc7942_0935 0.44 -1.3 942,460 - Synpcc7942_0935 0.51 +1.7 942,460 - Synpcc7942_0935 0.51 -0.6 942,493 + Synpcc7942_0935 0.55 -1.1 942,494 - Synpcc7942_0935 0.55 +1.3 942,501 - Synpcc7942_0935 0.56 -0.3 942,501 - Synpcc7942_0935 0.56 +1.0 942,560 + Synpcc7942_0935 0.64 -1.6 942,576 - Synpcc7942_0935 0.66 -3.2 942,590 + Synpcc7942_0935 0.68 -0.2 942,590 - Synpcc7942_0935 0.68 -1.8 942,599 - Synpcc7942_0935 0.69 +0.2 942,614 + Synpcc7942_0935 0.71 +1.6 942,619 + Synpcc7942_0935 0.71 +1.4 942,619 - Synpcc7942_0935 0.71 -0.6 942,624 + Synpcc7942_0935 0.72 -1.0 942,624 + Synpcc7942_0935 0.72 -0.6 942,624 + -0.2 942,632 - Synpcc7942_0935 0.73 +0.0 942,632 - Synpcc7942_0935 0.73 -0.1 942,632 - Synpcc7942_0935 0.73 +0.3 942,647 - Synpcc7942_0935 0.75 -0.1 942,661 + Synpcc7942_0935 0.77 -0.7 942,679 - Synpcc7942_0935 0.79 -0.1 942,694 + Synpcc7942_0935 0.81 +0.1 942,694 + Synpcc7942_0935 0.81 -0.1 942,739 + Synpcc7942_0935 0.87 +0.4 942,766 - +0.7 942,787 + -1.3 942,801 - +0.7 942,814 - -0.7 942,828 + +0.0 942,831 - +0.2 942,848 - -1.1 942,849 - +0.5 942,895 + -0.3 942,912 + Synpcc7942_0936 0.13 -1.4 942,912 + -1.9 942,912 + Synpcc7942_0936 0.13 -1.9 942,917 + Synpcc7942_0936 0.14 -1.5 942,920 - Synpcc7942_0936 0.14 -0.4 942,929 + Synpcc7942_0936 0.16 -0.5 942,941 + Synpcc7942_0936 0.18 +0.4 942,947 + Synpcc7942_0936 0.19 -2.1 942,958 - Synpcc7942_0936 0.21 -0.6 942,971 - Synpcc7942_0936 0.23 -0.5 942,974 + Synpcc7942_0936 0.24 -1.9 942,984 + Synpcc7942_0936 0.26 -0.8 942,992 - Synpcc7942_0936 0.27 -1.5 943,004 - Synpcc7942_0936 0.29 -2.2 943,005 + Synpcc7942_0936 0.30 +0.3 943,027 + Synpcc7942_0936 0.34 -1.2 943,046 - Synpcc7942_0936 0.37 -0.7
Or see this region's nucleotide sequence