Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0502

Experiment: No grazer flask 2 first outgrowth 150uE

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSynpcc7942_0500 and Synpcc7942_0501 are separated by 9 nucleotidesSynpcc7942_0501 and Synpcc7942_0502 are separated by 24 nucleotidesSynpcc7942_0502 and Synpcc7942_0503 overlap by 1 nucleotidesSynpcc7942_0503 and hemA overlap by 1 nucleotides Synpcc7942_0500: Synpcc7942_0500 - hypothetical protein, at 488,470 to 488,823 _0500 Synpcc7942_0501: Synpcc7942_0501 - Nucleoside-diphosphate-sugar epimerase-like, at 488,833 to 489,483 _0501 Synpcc7942_0502: Synpcc7942_0502 - hypothetical protein, at 489,508 to 490,074 _0502 Synpcc7942_0503: Synpcc7942_0503 - hypothetical protein, at 490,074 to 490,382 _0503 Synpcc7942_0504: hemA - glutamyl-tRNA reductase, at 490,382 to 491,698 hemA Position (kb) 489 490 491Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 488.541 kb on - strand, within Synpcc7942_0500at 488.543 kb on + strand, within Synpcc7942_0500at 488.547 kb on - strand, within Synpcc7942_0500at 488.549 kb on + strand, within Synpcc7942_0500at 488.551 kb on - strand, within Synpcc7942_0500at 488.551 kb on - strand, within Synpcc7942_0500at 488.565 kb on + strand, within Synpcc7942_0500at 488.573 kb on - strand, within Synpcc7942_0500at 488.579 kb on - strand, within Synpcc7942_0500at 488.624 kb on - strand, within Synpcc7942_0500at 488.629 kb on - strand, within Synpcc7942_0500at 488.652 kb on + strand, within Synpcc7942_0500at 488.660 kb on - strand, within Synpcc7942_0500at 488.700 kb on + strand, within Synpcc7942_0500at 488.700 kb on + strand, within Synpcc7942_0500at 488.706 kb on + strand, within Synpcc7942_0500at 488.711 kb on + strand, within Synpcc7942_0500at 488.714 kb on - strand, within Synpcc7942_0500at 488.714 kb on - strand, within Synpcc7942_0500at 488.714 kb on - strand, within Synpcc7942_0500at 488.714 kb on - strand, within Synpcc7942_0500at 488.714 kb on - strand, within Synpcc7942_0500at 488.714 kb on - strand, within Synpcc7942_0500at 488.717 kb on + strand, within Synpcc7942_0500at 488.719 kb on - strand, within Synpcc7942_0500at 488.745 kb on + strand, within Synpcc7942_0500at 488.745 kb on + strand, within Synpcc7942_0500at 488.745 kb on + strand, within Synpcc7942_0500at 488.745 kb on + strand, within Synpcc7942_0500at 488.753 kb on - strand, within Synpcc7942_0500at 488.753 kb on - strand, within Synpcc7942_0500at 488.753 kb on - strand, within Synpcc7942_0500at 488.753 kb on - strand, within Synpcc7942_0500at 488.759 kb on - strand, within Synpcc7942_0500at 488.764 kb on + strand, within Synpcc7942_0500at 488.772 kb on - strand, within Synpcc7942_0500at 488.800 kb on + strandat 488.813 kb on + strandat 488.837 kb on + strandat 488.845 kb on - strandat 488.845 kb on - strandat 488.845 kb on - strandat 488.855 kb on - strandat 488.871 kb on + strandat 488.871 kb on + strandat 488.879 kb on - strandat 488.879 kb on - strandat 488.935 kb on - strand, within Synpcc7942_0501at 488.948 kb on + strand, within Synpcc7942_0501at 489.030 kb on + strand, within Synpcc7942_0501at 489.050 kb on + strand, within Synpcc7942_0501at 489.050 kb on + strand, within Synpcc7942_0501at 489.050 kb on + strand, within Synpcc7942_0501at 489.050 kb on + strand, within Synpcc7942_0501at 489.050 kb on + strand, within Synpcc7942_0501at 489.050 kb on + strand, within Synpcc7942_0501at 489.050 kb on + strand, within Synpcc7942_0501at 489.050 kb on + strand, within Synpcc7942_0501at 489.050 kb on + strand, within Synpcc7942_0501at 489.058 kb on - strand, within Synpcc7942_0501at 489.058 kb on - strand, within Synpcc7942_0501at 489.058 kb on - strand, within Synpcc7942_0501at 489.076 kb on + strand, within Synpcc7942_0501at 489.077 kb on - strand, within Synpcc7942_0501at 489.094 kb on - strand, within Synpcc7942_0501at 489.095 kb on + strand, within Synpcc7942_0501at 489.103 kb on - strand, within Synpcc7942_0501at 489.105 kb on + strand, within Synpcc7942_0501at 489.105 kb on + strand, within Synpcc7942_0501at 489.105 kb on + strand, within Synpcc7942_0501at 489.110 kb on + strand, within Synpcc7942_0501at 489.110 kb on + strand, within Synpcc7942_0501at 489.113 kb on - strand, within Synpcc7942_0501at 489.120 kb on + strand, within Synpcc7942_0501at 489.141 kb on + strand, within Synpcc7942_0501at 489.160 kb on + strand, within Synpcc7942_0501at 489.163 kb on - strand, within Synpcc7942_0501at 489.168 kb on - strand, within Synpcc7942_0501at 489.168 kb on - strand, within Synpcc7942_0501at 489.168 kb on - strand, within Synpcc7942_0501at 489.183 kb on + strand, within Synpcc7942_0501at 489.201 kb on - strandat 489.202 kb on + strand, within Synpcc7942_0501at 489.218 kb on - strand, within Synpcc7942_0501at 489.230 kb on + strand, within Synpcc7942_0501at 489.230 kb on + strand, within Synpcc7942_0501at 489.230 kb on + strand, within Synpcc7942_0501at 489.265 kb on + strand, within Synpcc7942_0501at 489.269 kb on - strand, within Synpcc7942_0501at 489.289 kb on + strand, within Synpcc7942_0501at 489.289 kb on + strand, within Synpcc7942_0501at 489.318 kb on - strand, within Synpcc7942_0501at 489.348 kb on + strand, within Synpcc7942_0501at 489.362 kb on + strand, within Synpcc7942_0501at 489.378 kb on + strandat 489.401 kb on + strand, within Synpcc7942_0501at 489.439 kb on + strandat 489.514 kb on - strandat 489.516 kb on - strandat 489.550 kb on + strandat 489.563 kb on - strandat 489.566 kb on - strand, within Synpcc7942_0502at 489.605 kb on - strand, within Synpcc7942_0502at 489.605 kb on - strand, within Synpcc7942_0502at 489.616 kb on + strand, within Synpcc7942_0502at 489.621 kb on + strand, within Synpcc7942_0502at 489.624 kb on - strand, within Synpcc7942_0502at 489.629 kb on - strand, within Synpcc7942_0502at 489.629 kb on - strand, within Synpcc7942_0502at 489.629 kb on - strand, within Synpcc7942_0502at 489.629 kb on - strand, within Synpcc7942_0502at 489.689 kb on + strand, within Synpcc7942_0502at 489.689 kb on + strand, within Synpcc7942_0502at 489.697 kb on - strand, within Synpcc7942_0502at 489.697 kb on - strand, within Synpcc7942_0502at 489.697 kb on - strandat 489.704 kb on + strand, within Synpcc7942_0502at 489.707 kb on - strand, within Synpcc7942_0502at 489.755 kb on + strand, within Synpcc7942_0502at 489.755 kb on + strand, within Synpcc7942_0502at 489.763 kb on - strand, within Synpcc7942_0502at 489.763 kb on - strand, within Synpcc7942_0502at 489.763 kb on - strand, within Synpcc7942_0502at 489.802 kb on - strand, within Synpcc7942_0502at 489.804 kb on - strand, within Synpcc7942_0502at 489.814 kb on - strand, within Synpcc7942_0502at 489.814 kb on - strand, within Synpcc7942_0502at 489.821 kb on + strand, within Synpcc7942_0502at 489.821 kb on + strand, within Synpcc7942_0502at 489.829 kb on - strand, within Synpcc7942_0502at 489.831 kb on - strand, within Synpcc7942_0502at 489.964 kb on - strand, within Synpcc7942_0502at 489.972 kb on + strand, within Synpcc7942_0502at 489.972 kb on + strand, within Synpcc7942_0502at 489.980 kb on - strand, within Synpcc7942_0502at 489.983 kb on + strand, within Synpcc7942_0502at 489.988 kb on + strand, within Synpcc7942_0502at 489.991 kb on - strand, within Synpcc7942_0502at 490.033 kb on - strandat 490.046 kb on + strandat 490.054 kb on - strandat 490.080 kb on - strandat 490.128 kb on - strand, within Synpcc7942_0503at 490.162 kb on + strand, within Synpcc7942_0503at 490.170 kb on - strand, within Synpcc7942_0503at 490.185 kb on - strand, within Synpcc7942_0503at 490.233 kb on - strand, within Synpcc7942_0503at 490.290 kb on + strand, within Synpcc7942_0503at 490.301 kb on - strand, within Synpcc7942_0503at 490.347 kb on + strand, within Synpcc7942_0503at 490.355 kb on - strandat 490.386 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No grazer flask 2 first outgrowth 150uE
remove
488,541 - Synpcc7942_0500 0.20 -0.2
488,543 + Synpcc7942_0500 0.21 +1.0
488,547 - Synpcc7942_0500 0.22 -1.7
488,549 + Synpcc7942_0500 0.22 -0.7
488,551 - Synpcc7942_0500 0.23 -0.9
488,551 - Synpcc7942_0500 0.23 +0.1
488,565 + Synpcc7942_0500 0.27 -0.3
488,573 - Synpcc7942_0500 0.29 -2.9
488,579 - Synpcc7942_0500 0.31 +0.0
488,624 - Synpcc7942_0500 0.44 -0.1
488,629 - Synpcc7942_0500 0.45 -0.2
488,652 + Synpcc7942_0500 0.51 -0.4
488,660 - Synpcc7942_0500 0.54 +0.3
488,700 + Synpcc7942_0500 0.65 +0.8
488,700 + Synpcc7942_0500 0.65 -0.8
488,706 + Synpcc7942_0500 0.67 +0.3
488,711 + Synpcc7942_0500 0.68 -1.4
488,714 - Synpcc7942_0500 0.69 -0.7
488,714 - Synpcc7942_0500 0.69 +0.4
488,714 - Synpcc7942_0500 0.69 -0.5
488,714 - Synpcc7942_0500 0.69 -0.8
488,714 - Synpcc7942_0500 0.69 +1.0
488,714 - Synpcc7942_0500 0.69 -0.4
488,717 + Synpcc7942_0500 0.70 -0.5
488,719 - Synpcc7942_0500 0.70 +0.4
488,745 + Synpcc7942_0500 0.78 -1.0
488,745 + Synpcc7942_0500 0.78 -0.7
488,745 + Synpcc7942_0500 0.78 -0.8
488,745 + Synpcc7942_0500 0.78 +0.0
488,753 - Synpcc7942_0500 0.80 -0.1
488,753 - Synpcc7942_0500 0.80 -0.1
488,753 - Synpcc7942_0500 0.80 -1.0
488,753 - Synpcc7942_0500 0.80 -1.1
488,759 - Synpcc7942_0500 0.82 -1.0
488,764 + Synpcc7942_0500 0.83 -0.1
488,772 - Synpcc7942_0500 0.85 -0.7
488,800 + -0.4
488,813 + -1.3
488,837 + -0.8
488,845 - -0.5
488,845 - -0.4
488,845 - -1.0
488,855 - +0.0
488,871 + +1.4
488,871 + +0.1
488,879 - -1.7
488,879 - -0.9
488,935 - Synpcc7942_0501 0.16 -0.1
488,948 + Synpcc7942_0501 0.18 +0.5
489,030 + Synpcc7942_0501 0.30 -0.3
489,050 + Synpcc7942_0501 0.33 -0.1
489,050 + Synpcc7942_0501 0.33 -1.1
489,050 + Synpcc7942_0501 0.33 -0.7
489,050 + Synpcc7942_0501 0.33 +0.8
489,050 + Synpcc7942_0501 0.33 +0.7
489,050 + Synpcc7942_0501 0.33 +0.1
489,050 + Synpcc7942_0501 0.33 -0.0
489,050 + Synpcc7942_0501 0.33 +0.5
489,050 + Synpcc7942_0501 0.33 +0.6
489,058 - Synpcc7942_0501 0.35 -0.4
489,058 - Synpcc7942_0501 0.35 -1.3
489,058 - Synpcc7942_0501 0.35 -0.1
489,076 + Synpcc7942_0501 0.37 -0.3
489,077 - Synpcc7942_0501 0.37 -0.1
489,094 - Synpcc7942_0501 0.40 +0.1
489,095 + Synpcc7942_0501 0.40 +0.3
489,103 - Synpcc7942_0501 0.41 +1.1
489,105 + Synpcc7942_0501 0.42 -2.5
489,105 + Synpcc7942_0501 0.42 +0.7
489,105 + Synpcc7942_0501 0.42 +1.2
489,110 + Synpcc7942_0501 0.43 +0.1
489,110 + Synpcc7942_0501 0.43 +0.5
489,113 - Synpcc7942_0501 0.43 +0.3
489,120 + Synpcc7942_0501 0.44 -1.7
489,141 + Synpcc7942_0501 0.47 +0.2
489,160 + Synpcc7942_0501 0.50 -0.1
489,163 - Synpcc7942_0501 0.51 +0.5
489,168 - Synpcc7942_0501 0.51 -0.9
489,168 - Synpcc7942_0501 0.51 +0.4
489,168 - Synpcc7942_0501 0.51 -3.7
489,183 + Synpcc7942_0501 0.54 -1.0
489,201 - -0.4
489,202 + Synpcc7942_0501 0.57 -1.0
489,218 - Synpcc7942_0501 0.59 -1.1
489,230 + Synpcc7942_0501 0.61 +0.4
489,230 + Synpcc7942_0501 0.61 -0.2
489,230 + Synpcc7942_0501 0.61 -0.4
489,265 + Synpcc7942_0501 0.66 -0.6
489,269 - Synpcc7942_0501 0.67 +1.8
489,289 + Synpcc7942_0501 0.70 -1.1
489,289 + Synpcc7942_0501 0.70 -2.2
489,318 - Synpcc7942_0501 0.75 -0.3
489,348 + Synpcc7942_0501 0.79 -0.1
489,362 + Synpcc7942_0501 0.81 +0.8
489,378 + +1.1
489,401 + Synpcc7942_0501 0.87 -0.5
489,439 + +0.3
489,514 - +0.2
489,516 - +0.8
489,550 + -1.2
489,563 - -0.4
489,566 - Synpcc7942_0502 0.10 -1.3
489,605 - Synpcc7942_0502 0.17 +0.4
489,605 - Synpcc7942_0502 0.17 -0.1
489,616 + Synpcc7942_0502 0.19 -1.3
489,621 + Synpcc7942_0502 0.20 +0.1
489,624 - Synpcc7942_0502 0.20 -1.9
489,629 - Synpcc7942_0502 0.21 +0.1
489,629 - Synpcc7942_0502 0.21 -0.6
489,629 - Synpcc7942_0502 0.21 -1.6
489,629 - Synpcc7942_0502 0.21 +0.1
489,689 + Synpcc7942_0502 0.32 +1.2
489,689 + Synpcc7942_0502 0.32 -0.4
489,697 - Synpcc7942_0502 0.33 +1.3
489,697 - Synpcc7942_0502 0.33 +0.3
489,697 - -0.1
489,704 + Synpcc7942_0502 0.35 -1.0
489,707 - Synpcc7942_0502 0.35 +0.1
489,755 + Synpcc7942_0502 0.44 -0.3
489,755 + Synpcc7942_0502 0.44 +0.2
489,763 - Synpcc7942_0502 0.45 -1.0
489,763 - Synpcc7942_0502 0.45 -0.6
489,763 - Synpcc7942_0502 0.45 +0.2
489,802 - Synpcc7942_0502 0.52 -0.6
489,804 - Synpcc7942_0502 0.52 +0.9
489,814 - Synpcc7942_0502 0.54 -0.3
489,814 - Synpcc7942_0502 0.54 +0.0
489,821 + Synpcc7942_0502 0.55 +0.1
489,821 + Synpcc7942_0502 0.55 -0.7
489,829 - Synpcc7942_0502 0.57 +0.1
489,831 - Synpcc7942_0502 0.57 -0.2
489,964 - Synpcc7942_0502 0.80 +0.8
489,972 + Synpcc7942_0502 0.82 -2.0
489,972 + Synpcc7942_0502 0.82 +1.2
489,980 - Synpcc7942_0502 0.83 -0.1
489,983 + Synpcc7942_0502 0.84 -1.4
489,988 + Synpcc7942_0502 0.85 -1.3
489,991 - Synpcc7942_0502 0.85 +0.9
490,033 - -1.1
490,046 + -0.2
490,054 - +0.5
490,080 - -1.5
490,128 - Synpcc7942_0503 0.17 -2.6
490,162 + Synpcc7942_0503 0.28 -1.4
490,170 - Synpcc7942_0503 0.31 -1.2
490,185 - Synpcc7942_0503 0.36 -3.1
490,233 - Synpcc7942_0503 0.51 +0.6
490,290 + Synpcc7942_0503 0.70 +1.1
490,301 - Synpcc7942_0503 0.73 -0.1
490,347 + Synpcc7942_0503 0.88 -0.8
490,355 - -0.8
490,386 - +0.9

Or see this region's nucleotide sequence