Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0270

Experiment: No grazer flask 2 first outgrowth 150uE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0269 and Synpcc7942_0270 are separated by 117 nucleotidesSynpcc7942_0270 and cobA overlap by 4 nucleotidescobA and hemD overlap by 8 nucleotides Synpcc7942_0269: Synpcc7942_0269 - hypothetical protein, at 264,976 to 265,857 _0269 Synpcc7942_0270: Synpcc7942_0270 - TPR repeat, at 265,975 to 267,168 _0270 Synpcc7942_0271: cobA - uroporphyrinogen-III C-methyltransferase, at 267,165 to 267,896 cobA Synpcc7942_0272: hemD - Uroporphyrinogen-III synthase, at 267,889 to 268,683 hemD Position (kb) 265 266 267 268Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 265.081 kb on - strand, within Synpcc7942_0269at 265.103 kb on + strand, within Synpcc7942_0269at 265.119 kb on + strand, within Synpcc7942_0269at 265.148 kb on - strand, within Synpcc7942_0269at 265.148 kb on - strand, within Synpcc7942_0269at 265.175 kb on - strand, within Synpcc7942_0269at 265.209 kb on + strand, within Synpcc7942_0269at 265.218 kb on + strand, within Synpcc7942_0269at 265.226 kb on - strand, within Synpcc7942_0269at 265.231 kb on + strandat 265.280 kb on + strand, within Synpcc7942_0269at 265.287 kb on - strand, within Synpcc7942_0269at 265.322 kb on + strand, within Synpcc7942_0269at 265.330 kb on - strand, within Synpcc7942_0269at 265.330 kb on - strand, within Synpcc7942_0269at 265.330 kb on - strand, within Synpcc7942_0269at 265.330 kb on - strand, within Synpcc7942_0269at 265.371 kb on - strand, within Synpcc7942_0269at 265.377 kb on - strand, within Synpcc7942_0269at 265.385 kb on + strand, within Synpcc7942_0269at 265.395 kb on + strand, within Synpcc7942_0269at 265.428 kb on + strand, within Synpcc7942_0269at 265.436 kb on - strand, within Synpcc7942_0269at 265.455 kb on + strand, within Synpcc7942_0269at 265.463 kb on - strand, within Synpcc7942_0269at 265.473 kb on + strand, within Synpcc7942_0269at 265.478 kb on - strand, within Synpcc7942_0269at 265.492 kb on + strand, within Synpcc7942_0269at 265.492 kb on + strand, within Synpcc7942_0269at 265.492 kb on + strand, within Synpcc7942_0269at 265.500 kb on - strand, within Synpcc7942_0269at 265.500 kb on - strand, within Synpcc7942_0269at 265.521 kb on - strand, within Synpcc7942_0269at 265.548 kb on + strand, within Synpcc7942_0269at 265.559 kb on - strand, within Synpcc7942_0269at 265.559 kb on - strand, within Synpcc7942_0269at 265.559 kb on - strand, within Synpcc7942_0269at 265.559 kb on - strand, within Synpcc7942_0269at 265.593 kb on + strand, within Synpcc7942_0269at 265.626 kb on - strand, within Synpcc7942_0269at 265.626 kb on - strand, within Synpcc7942_0269at 265.626 kb on - strand, within Synpcc7942_0269at 265.626 kb on - strand, within Synpcc7942_0269at 265.626 kb on - strand, within Synpcc7942_0269at 265.626 kb on - strand, within Synpcc7942_0269at 265.626 kb on - strand, within Synpcc7942_0269at 265.649 kb on + strand, within Synpcc7942_0269at 265.653 kb on + strand, within Synpcc7942_0269at 265.654 kb on + strand, within Synpcc7942_0269at 265.661 kb on - strand, within Synpcc7942_0269at 265.661 kb on - strand, within Synpcc7942_0269at 265.664 kb on + strand, within Synpcc7942_0269at 265.664 kb on + strand, within Synpcc7942_0269at 265.664 kb on + strand, within Synpcc7942_0269at 265.741 kb on + strand, within Synpcc7942_0269at 265.741 kb on + strand, within Synpcc7942_0269at 265.741 kb on + strandat 265.749 kb on - strand, within Synpcc7942_0269at 265.763 kb on - strand, within Synpcc7942_0269at 265.805 kb on - strandat 265.815 kb on - strandat 265.853 kb on + strandat 265.869 kb on + strandat 265.875 kb on - strandat 265.877 kb on - strandat 265.911 kb on + strandat 265.911 kb on + strandat 265.911 kb on + strandat 265.919 kb on - strandat 265.924 kb on - strandat 265.936 kb on - strandat 265.945 kb on + strandat 265.948 kb on - strandat 265.948 kb on - strandat 265.959 kb on - strandat 265.978 kb on + strandat 266.044 kb on + strandat 266.063 kb on + strandat 266.076 kb on + strandat 266.076 kb on + strandat 266.084 kb on - strandat 266.084 kb on - strandat 266.107 kb on - strand, within Synpcc7942_0270at 266.131 kb on - strandat 266.131 kb on - strand, within Synpcc7942_0270at 266.133 kb on + strand, within Synpcc7942_0270at 266.133 kb on + strand, within Synpcc7942_0270at 266.141 kb on - strand, within Synpcc7942_0270at 266.141 kb on - strand, within Synpcc7942_0270at 266.227 kb on - strand, within Synpcc7942_0270at 266.266 kb on + strand, within Synpcc7942_0270at 266.307 kb on - strand, within Synpcc7942_0270at 266.317 kb on - strand, within Synpcc7942_0270at 266.388 kb on + strand, within Synpcc7942_0270at 266.398 kb on - strand, within Synpcc7942_0270at 266.400 kb on - strand, within Synpcc7942_0270at 266.404 kb on + strand, within Synpcc7942_0270at 266.416 kb on - strand, within Synpcc7942_0270at 266.425 kb on - strand, within Synpcc7942_0270at 266.457 kb on + strand, within Synpcc7942_0270at 266.496 kb on - strand, within Synpcc7942_0270at 266.576 kb on + strand, within Synpcc7942_0270at 266.584 kb on - strand, within Synpcc7942_0270at 266.586 kb on - strand, within Synpcc7942_0270at 266.586 kb on - strand, within Synpcc7942_0270at 266.591 kb on - strand, within Synpcc7942_0270at 266.611 kb on + strand, within Synpcc7942_0270at 266.643 kb on - strand, within Synpcc7942_0270at 266.690 kb on + strand, within Synpcc7942_0270at 266.695 kb on + strand, within Synpcc7942_0270at 266.751 kb on + strand, within Synpcc7942_0270at 266.778 kb on - strand, within Synpcc7942_0270at 266.815 kb on - strand, within Synpcc7942_0270at 266.821 kb on - strand, within Synpcc7942_0270at 266.837 kb on - strand, within Synpcc7942_0270at 266.858 kb on - strand, within Synpcc7942_0270at 266.859 kb on + strand, within Synpcc7942_0270at 266.859 kb on + strand, within Synpcc7942_0270at 266.860 kb on + strand, within Synpcc7942_0270at 266.867 kb on - strand, within Synpcc7942_0270at 266.874 kb on + strand, within Synpcc7942_0270at 266.952 kb on + strand, within Synpcc7942_0270at 266.952 kb on - strand, within Synpcc7942_0270at 266.954 kb on + strand, within Synpcc7942_0270at 266.977 kb on - strand, within Synpcc7942_0270at 266.986 kb on + strand, within Synpcc7942_0270at 266.994 kb on - strand, within Synpcc7942_0270at 267.013 kb on - strand, within Synpcc7942_0270at 267.098 kb on + strandat 267.108 kb on - strandat 267.121 kb on - strandat 267.128 kb on + strandat 267.128 kb on + strandat 267.128 kb on + strandat 267.136 kb on - strandat 267.179 kb on - strandat 267.881 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No grazer flask 2 first outgrowth 150uE
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265,081 - Synpcc7942_0269 0.12 +0.4
265,103 + Synpcc7942_0269 0.14 -0.0
265,119 + Synpcc7942_0269 0.16 +0.1
265,148 - Synpcc7942_0269 0.20 +0.4
265,148 - Synpcc7942_0269 0.20 -0.3
265,175 - Synpcc7942_0269 0.23 +0.0
265,209 + Synpcc7942_0269 0.26 -0.2
265,218 + Synpcc7942_0269 0.27 -2.0
265,226 - Synpcc7942_0269 0.28 +0.2
265,231 + -1.3
265,280 + Synpcc7942_0269 0.34 -0.2
265,287 - Synpcc7942_0269 0.35 +0.2
265,322 + Synpcc7942_0269 0.39 -0.6
265,330 - Synpcc7942_0269 0.40 -1.5
265,330 - Synpcc7942_0269 0.40 -0.9
265,330 - Synpcc7942_0269 0.40 -1.0
265,330 - Synpcc7942_0269 0.40 +0.7
265,371 - Synpcc7942_0269 0.45 -0.3
265,377 - Synpcc7942_0269 0.45 -0.4
265,385 + Synpcc7942_0269 0.46 -1.0
265,395 + Synpcc7942_0269 0.48 +1.0
265,428 + Synpcc7942_0269 0.51 -0.2
265,436 - Synpcc7942_0269 0.52 +0.9
265,455 + Synpcc7942_0269 0.54 +0.4
265,463 - Synpcc7942_0269 0.55 -1.0
265,473 + Synpcc7942_0269 0.56 -0.2
265,478 - Synpcc7942_0269 0.57 +0.1
265,492 + Synpcc7942_0269 0.59 -1.0
265,492 + Synpcc7942_0269 0.59 +0.1
265,492 + Synpcc7942_0269 0.59 -0.5
265,500 - Synpcc7942_0269 0.59 -0.2
265,500 - Synpcc7942_0269 0.59 +0.4
265,521 - Synpcc7942_0269 0.62 -0.1
265,548 + Synpcc7942_0269 0.65 -0.4
265,559 - Synpcc7942_0269 0.66 +0.6
265,559 - Synpcc7942_0269 0.66 +0.8
265,559 - Synpcc7942_0269 0.66 +0.3
265,559 - Synpcc7942_0269 0.66 -0.8
265,593 + Synpcc7942_0269 0.70 +1.0
265,626 - Synpcc7942_0269 0.74 -0.6
265,626 - Synpcc7942_0269 0.74 +0.8
265,626 - Synpcc7942_0269 0.74 +0.5
265,626 - Synpcc7942_0269 0.74 -0.1
265,626 - Synpcc7942_0269 0.74 +0.7
265,626 - Synpcc7942_0269 0.74 -0.7
265,626 - Synpcc7942_0269 0.74 -1.1
265,649 + Synpcc7942_0269 0.76 +1.6
265,653 + Synpcc7942_0269 0.77 -0.7
265,654 + Synpcc7942_0269 0.77 +1.1
265,661 - Synpcc7942_0269 0.78 -1.3
265,661 - Synpcc7942_0269 0.78 +1.1
265,664 + Synpcc7942_0269 0.78 -0.2
265,664 + Synpcc7942_0269 0.78 -0.2
265,664 + Synpcc7942_0269 0.78 -0.8
265,741 + Synpcc7942_0269 0.87 +1.5
265,741 + Synpcc7942_0269 0.87 +1.8
265,741 + +1.1
265,749 - Synpcc7942_0269 0.88 +0.1
265,763 - Synpcc7942_0269 0.89 +0.1
265,805 - -0.9
265,815 - -1.0
265,853 + +1.1
265,869 + +1.0
265,875 - -0.6
265,877 - +0.1
265,911 + -0.4
265,911 + -0.1
265,911 + +0.6
265,919 - -0.9
265,924 - -1.0
265,936 - -0.4
265,945 + -0.9
265,948 - -0.6
265,948 - -3.2
265,959 - +0.5
265,978 + -0.1
266,044 + -1.9
266,063 + -0.8
266,076 + -1.9
266,076 + -2.4
266,084 - -0.9
266,084 - -0.8
266,107 - Synpcc7942_0270 0.11 -1.3
266,131 - +0.1
266,131 - Synpcc7942_0270 0.13 -3.4
266,133 + Synpcc7942_0270 0.13 -2.6
266,133 + Synpcc7942_0270 0.13 +0.2
266,141 - Synpcc7942_0270 0.14 -3.1
266,141 - Synpcc7942_0270 0.14 -2.1
266,227 - Synpcc7942_0270 0.21 -0.3
266,266 + Synpcc7942_0270 0.24 -1.4
266,307 - Synpcc7942_0270 0.28 -0.5
266,317 - Synpcc7942_0270 0.29 -1.0
266,388 + Synpcc7942_0270 0.35 +0.5
266,398 - Synpcc7942_0270 0.35 -2.5
266,400 - Synpcc7942_0270 0.36 -2.6
266,404 + Synpcc7942_0270 0.36 -2.0
266,416 - Synpcc7942_0270 0.37 -2.4
266,425 - Synpcc7942_0270 0.38 -1.0
266,457 + Synpcc7942_0270 0.40 -1.8
266,496 - Synpcc7942_0270 0.44 -1.4
266,576 + Synpcc7942_0270 0.50 -0.4
266,584 - Synpcc7942_0270 0.51 -0.8
266,586 - Synpcc7942_0270 0.51 -0.1
266,586 - Synpcc7942_0270 0.51 -1.4
266,591 - Synpcc7942_0270 0.52 +0.7
266,611 + Synpcc7942_0270 0.53 -2.5
266,643 - Synpcc7942_0270 0.56 +0.4
266,690 + Synpcc7942_0270 0.60 -0.5
266,695 + Synpcc7942_0270 0.60 -0.5
266,751 + Synpcc7942_0270 0.65 -1.9
266,778 - Synpcc7942_0270 0.67 -1.8
266,815 - Synpcc7942_0270 0.70 -0.0
266,821 - Synpcc7942_0270 0.71 -1.5
266,837 - Synpcc7942_0270 0.72 -0.7
266,858 - Synpcc7942_0270 0.74 -1.7
266,859 + Synpcc7942_0270 0.74 -0.4
266,859 + Synpcc7942_0270 0.74 -1.6
266,860 + Synpcc7942_0270 0.74 -2.1
266,867 - Synpcc7942_0270 0.75 -2.0
266,874 + Synpcc7942_0270 0.75 -0.2
266,952 + Synpcc7942_0270 0.82 -1.0
266,952 - Synpcc7942_0270 0.82 +0.1
266,954 + Synpcc7942_0270 0.82 -1.1
266,977 - Synpcc7942_0270 0.84 -0.9
266,986 + Synpcc7942_0270 0.85 -2.7
266,994 - Synpcc7942_0270 0.85 -1.1
267,013 - Synpcc7942_0270 0.87 -3.6
267,098 + -0.3
267,108 - -0.4
267,121 - -0.1
267,128 + -1.4
267,128 + -0.6
267,128 + -2.5
267,136 - -0.6
267,179 - -0.3
267,881 - -0.1

Or see this region's nucleotide sequence