Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0119

Experiment: No grazer flask 2 first outgrowth 150uE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgatB and Synpcc7942_0119 are separated by 307 nucleotidesSynpcc7942_0119 and Synpcc7942_0120 are separated by 215 nucleotidesSynpcc7942_0120 and Synpcc7942_0121 are separated by 19 nucleotides Synpcc7942_0118: gatB - aspartyl/glutamyl-tRNA amidotransferase subunit B, at 116,943 to 118,427 gatB Synpcc7942_0119: Synpcc7942_0119 - hypothetical protein, at 118,735 to 119,292 _0119 Synpcc7942_0120: Synpcc7942_0120 - Cytosine/adenosine deaminase-like, at 119,508 to 119,993 _0120 Synpcc7942_0121: Synpcc7942_0121 - hypothetical protein, at 120,013 to 121,239 _0121 Position (kb) 118 119 120Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 118.422 kb on + strandat 118.460 kb on + strandat 118.460 kb on + strandat 118.460 kb on + strandat 118.460 kb on + strandat 118.468 kb on - strandat 118.479 kb on + strandat 118.491 kb on + strandat 118.535 kb on - strandat 118.566 kb on - strandat 118.570 kb on + strandat 118.571 kb on - strandat 118.575 kb on + strandat 118.606 kb on - strandat 118.608 kb on + strandat 118.686 kb on + strandat 118.734 kb on + strandat 118.739 kb on + strandat 118.740 kb on - strandat 118.765 kb on + strandat 118.783 kb on - strandat 118.797 kb on - strand, within Synpcc7942_0119at 118.823 kb on + strand, within Synpcc7942_0119at 118.914 kb on - strand, within Synpcc7942_0119at 118.921 kb on + strand, within Synpcc7942_0119at 118.921 kb on + strand, within Synpcc7942_0119at 118.921 kb on + strandat 118.921 kb on + strand, within Synpcc7942_0119at 118.943 kb on - strand, within Synpcc7942_0119at 118.948 kb on + strand, within Synpcc7942_0119at 118.948 kb on - strand, within Synpcc7942_0119at 118.951 kb on - strand, within Synpcc7942_0119at 118.956 kb on - strand, within Synpcc7942_0119at 118.957 kb on + strand, within Synpcc7942_0119at 118.965 kb on - strand, within Synpcc7942_0119at 118.965 kb on - strand, within Synpcc7942_0119at 118.965 kb on - strand, within Synpcc7942_0119at 118.978 kb on - strand, within Synpcc7942_0119at 118.993 kb on + strand, within Synpcc7942_0119at 118.993 kb on + strand, within Synpcc7942_0119at 119.071 kb on - strand, within Synpcc7942_0119at 119.071 kb on - strand, within Synpcc7942_0119at 119.080 kb on + strandat 119.220 kb on + strand, within Synpcc7942_0119at 119.230 kb on - strand, within Synpcc7942_0119at 119.240 kb on + strandat 119.375 kb on + strandat 119.397 kb on - strandat 119.401 kb on + strandat 119.401 kb on + strandat 119.408 kb on + strandat 119.408 kb on + strandat 119.408 kb on + strandat 119.408 kb on + strandat 119.408 kb on + strandat 119.408 kb on + strandat 119.408 kb on + strandat 119.408 kb on + strandat 119.408 kb on + strandat 119.408 kb on + strandat 119.408 kb on + strandat 119.413 kb on + strandat 119.416 kb on - strandat 119.416 kb on - strandat 119.416 kb on - strandat 119.416 kb on - strandat 119.416 kb on - strandat 119.416 kb on - strandat 119.416 kb on - strandat 119.416 kb on - strandat 119.416 kb on - strandat 119.416 kb on - strandat 119.416 kb on - strandat 119.423 kb on + strandat 119.423 kb on + strandat 119.446 kb on + strandat 119.446 kb on + strandat 119.446 kb on + strandat 119.447 kb on + strandat 119.454 kb on - strandat 119.454 kb on - strandat 119.465 kb on - strandat 119.465 kb on - strandat 119.512 kb on - strandat 119.512 kb on - strandat 119.539 kb on - strandat 119.606 kb on - strand, within Synpcc7942_0120at 119.631 kb on - strand, within Synpcc7942_0120at 119.657 kb on - strand, within Synpcc7942_0120at 119.731 kb on + strand, within Synpcc7942_0120at 119.739 kb on - strand, within Synpcc7942_0120at 119.748 kb on + strand, within Synpcc7942_0120at 119.748 kb on + strand, within Synpcc7942_0120at 119.748 kb on + strand, within Synpcc7942_0120at 119.748 kb on + strand, within Synpcc7942_0120at 119.756 kb on - strand, within Synpcc7942_0120at 119.756 kb on - strand, within Synpcc7942_0120at 119.756 kb on - strand, within Synpcc7942_0120at 119.756 kb on - strand, within Synpcc7942_0120at 119.756 kb on - strand, within Synpcc7942_0120at 119.756 kb on - strand, within Synpcc7942_0120at 119.756 kb on - strand, within Synpcc7942_0120at 119.787 kb on - strand, within Synpcc7942_0120at 119.795 kb on - strand, within Synpcc7942_0120at 119.845 kb on + strand, within Synpcc7942_0120at 119.845 kb on + strand, within Synpcc7942_0120at 119.853 kb on - strand, within Synpcc7942_0120at 119.857 kb on - strand, within Synpcc7942_0120at 119.882 kb on - strand, within Synpcc7942_0120at 119.899 kb on - strand, within Synpcc7942_0120at 119.901 kb on + strand, within Synpcc7942_0120at 119.901 kb on + strand, within Synpcc7942_0120at 119.909 kb on - strand, within Synpcc7942_0120at 119.909 kb on - strand, within Synpcc7942_0120at 119.995 kb on + strandat 120.014 kb on - strandat 120.046 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No grazer flask 2 first outgrowth 150uE
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118,422 + -1.9
118,460 + -2.0
118,460 + -2.6
118,460 + -0.1
118,460 + +1.6
118,468 - -1.2
118,479 + -3.1
118,491 + +0.8
118,535 - -0.8
118,566 - +1.5
118,570 + +0.4
118,571 - +0.1
118,575 + -1.8
118,606 - +1.0
118,608 + +0.6
118,686 + +0.9
118,734 + -0.0
118,739 + +1.1
118,740 - -1.2
118,765 + +1.1
118,783 - -1.2
118,797 - Synpcc7942_0119 0.11 -1.3
118,823 + Synpcc7942_0119 0.16 +0.5
118,914 - Synpcc7942_0119 0.32 -0.3
118,921 + Synpcc7942_0119 0.33 -1.1
118,921 + Synpcc7942_0119 0.33 +0.3
118,921 + +0.5
118,921 + Synpcc7942_0119 0.33 -1.8
118,943 - Synpcc7942_0119 0.37 -0.9
118,948 + Synpcc7942_0119 0.38 +0.7
118,948 - Synpcc7942_0119 0.38 -0.5
118,951 - Synpcc7942_0119 0.39 -1.9
118,956 - Synpcc7942_0119 0.40 -1.0
118,957 + Synpcc7942_0119 0.40 +0.1
118,965 - Synpcc7942_0119 0.41 -0.2
118,965 - Synpcc7942_0119 0.41 -0.4
118,965 - Synpcc7942_0119 0.41 -1.5
118,978 - Synpcc7942_0119 0.44 -0.8
118,993 + Synpcc7942_0119 0.46 -1.2
118,993 + Synpcc7942_0119 0.46 -1.2
119,071 - Synpcc7942_0119 0.60 -0.3
119,071 - Synpcc7942_0119 0.60 +0.5
119,080 + -0.3
119,220 + Synpcc7942_0119 0.87 +0.9
119,230 - Synpcc7942_0119 0.89 +2.0
119,240 + +1.5
119,375 + -0.1
119,397 - +0.5
119,401 + -0.6
119,401 + -1.1
119,408 + -0.0
119,408 + -0.9
119,408 + -1.5
119,408 + +0.3
119,408 + +0.1
119,408 + -1.1
119,408 + -1.2
119,408 + -0.0
119,408 + +0.5
119,408 + -1.0
119,408 + -1.5
119,413 + +0.4
119,416 - -0.2
119,416 - -0.5
119,416 - +0.6
119,416 - +0.8
119,416 - -0.2
119,416 - +0.4
119,416 - -1.3
119,416 - -0.9
119,416 - -0.9
119,416 - -0.5
119,416 - -0.4
119,423 + +0.3
119,423 + +0.6
119,446 + -1.3
119,446 + +0.4
119,446 + -0.3
119,447 + +0.6
119,454 - -1.0
119,454 - -1.1
119,465 - -0.9
119,465 - +0.1
119,512 - -0.8
119,512 - +0.1
119,539 - -0.1
119,606 - Synpcc7942_0120 0.20 -1.0
119,631 - Synpcc7942_0120 0.25 -1.2
119,657 - Synpcc7942_0120 0.31 -1.5
119,731 + Synpcc7942_0120 0.46 -1.1
119,739 - Synpcc7942_0120 0.48 +0.8
119,748 + Synpcc7942_0120 0.49 +1.5
119,748 + Synpcc7942_0120 0.49 +0.6
119,748 + Synpcc7942_0120 0.49 +0.7
119,748 + Synpcc7942_0120 0.49 +0.8
119,756 - Synpcc7942_0120 0.51 -0.0
119,756 - Synpcc7942_0120 0.51 +0.9
119,756 - Synpcc7942_0120 0.51 +0.2
119,756 - Synpcc7942_0120 0.51 -0.2
119,756 - Synpcc7942_0120 0.51 +0.2
119,756 - Synpcc7942_0120 0.51 -2.3
119,756 - Synpcc7942_0120 0.51 -0.0
119,787 - Synpcc7942_0120 0.57 -0.4
119,795 - Synpcc7942_0120 0.59 +0.1
119,845 + Synpcc7942_0120 0.69 -0.7
119,845 + Synpcc7942_0120 0.69 +0.2
119,853 - Synpcc7942_0120 0.71 +0.1
119,857 - Synpcc7942_0120 0.72 +0.5
119,882 - Synpcc7942_0120 0.77 +0.1
119,899 - Synpcc7942_0120 0.80 +0.8
119,901 + Synpcc7942_0120 0.81 +0.3
119,901 + Synpcc7942_0120 0.81 -0.4
119,909 - Synpcc7942_0120 0.83 +0.5
119,909 - Synpcc7942_0120 0.83 -0.6
119,995 + -1.9
120,014 - -0.5
120,046 - -2.1

Or see this region's nucleotide sequence