Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19315

Experiment: diet=StandardDiet; sample=FecalPellet; mouse4; day1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; mouse4; day1
2,111,767	+		BBR_RS19310	0.38	+2.0
2,111,769	-		BBR_RS19310	0.38	+0.8
2,111,770	-		BBR_RS19310	0.38	-0.5
2,111,774	-		BBR_RS19310	0.38	-1.1
2,111,775	+		BBR_RS19310	0.38	+0.1
2,111,775	-		BBR_RS19310	0.38	+0.3
2,111,775	-		BBR_RS19310	0.38	-0.8
2,111,775	-		BBR_RS19310	0.38	-0.3
2,111,780	+		BBR_RS19310	0.39	-0.3
2,111,785	-		BBR_RS19310	0.39	+0.3
2,111,806	+		BBR_RS19310	0.41	+0.2
2,111,838	-		BBR_RS19310	0.43	-1.6
2,111,838	-		BBR_RS19310	0.43	+1.1
2,111,841	+		BBR_RS19310	0.43	+1.2
2,111,850	+		BBR_RS19310	0.44	+0.1
2,111,888	+		BBR_RS19310	0.47	+0.8
2,111,888	+		BBR_RS19310	0.47	+1.3
2,111,888	+		BBR_RS19310	0.47	-1.6
2,111,891	+		BBR_RS19310	0.47	+0.7
2,111,896	+		BBR_RS19310	0.48	+0.4
2,111,896	-		BBR_RS19310	0.48	+0.9
2,111,904	-		BBR_RS19310	0.48	-0.9
2,111,904	-		BBR_RS19310	0.48	+0.8
2,111,921	-		BBR_RS19310	0.50	+0.3
2,111,921	-		BBR_RS19310	0.50	-1.6
2,111,932	+		BBR_RS19310	0.50	+0.9
2,111,940	-		BBR_RS19310	0.51	+0.1
2,111,940	-		BBR_RS19310	0.51	-0.8
2,111,951	-		BBR_RS19310	0.52	+0.7
2,111,958	+		BBR_RS19310	0.52	-0.2
2,111,969	-		BBR_RS19310	0.53	+0.9
2,111,971	-		BBR_RS19310	0.53	+0.0
2,111,971	-		BBR_RS19310	0.53	+0.6
2,111,976	-		BBR_RS19310	0.54	-1.2
2,112,016	-		BBR_RS19310	0.57	+1.0
2,112,063	+		BBR_RS19310	0.61	+1.8
2,112,071	-		BBR_RS19310	0.61	+1.2
2,112,078	-		BBR_RS19310	0.62	-1.6
2,112,107	+		BBR_RS19310	0.64	+0.2
2,112,115	-		BBR_RS19310	0.65	+1.8
2,112,115	-		BBR_RS19310	0.65	+1.5
2,112,115	-		BBR_RS19310	0.65	-1.6
2,112,138	+		BBR_RS19310	0.66	+0.6
2,112,162	+		BBR_RS19310	0.68	+0.4
2,112,162	+		BBR_RS19310	0.68	-1.8
2,112,169	+		BBR_RS19310	0.69	-0.8
2,112,170	-		BBR_RS19310	0.69	-0.7
2,112,170	-		BBR_RS19310	0.69	+0.3
2,112,170	-		BBR_RS19310	0.69	-1.4
2,112,177	-		BBR_RS19310	0.69	-2.3
2,112,177	-		BBR_RS19310	0.69	+0.6
2,112,177	-		BBR_RS19310	0.69	-2.3
2,112,184	+		BBR_RS19310	0.70	+1.1
2,112,187	+		BBR_RS19310	0.70	+1.0
2,112,187	-		BBR_RS19310	0.70	-0.2
2,112,192	-		BBR_RS19310	0.70	+1.0
2,112,192	-		BBR_RS19310	0.70	-1.5
2,112,195	-		BBR_RS19310	0.71	+0.9
2,112,222	+		BBR_RS19310	0.73	-0.3
2,112,255	-		BBR_RS19310	0.75	+0.5
2,112,259	+		BBR_RS19310	0.76	-0.2
2,112,260	-		BBR_RS19310	0.76	-0.2
2,112,260	-		BBR_RS19310	0.76	+0.3
2,112,300	+		BBR_RS19310	0.79	-2.5
2,112,300	+		BBR_RS19310	0.79	+0.2
2,112,301	-		BBR_RS19310	0.79	-0.5
2,112,308	-		BBR_RS19310	0.79	-0.7
2,112,308	-		BBR_RS19310	0.79	+1.6
2,112,354	+		BBR_RS19310	0.83	-0.2
2,112,410	-		BBR_RS19310	0.87	+0.9
2,112,418	-		BBR_RS19310	0.88	+0.7
2,112,422	-		BBR_RS19310	0.88	-0.1
2,112,457	-				-1.4
2,112,473	+				+1.0
2,112,475	-				+1.8
2,112,502	-				-2.2
2,112,510	-				+0.6
2,112,520	+				+0.8
2,112,526	+				-1.9
2,112,534	-				-0.4
2,112,534	-				-1.1
2,112,542	+				-0.8
2,112,563	-				-0.1
2,112,578	-				-0.1
2,112,578	-				+0.8
2,112,578	-				-0.7
2,112,578	-				-1.6
2,112,579	-				+0.7
2,112,605	-				-0.2
2,112,611	-				-0.5
2,112,614	+				-0.8
2,112,635	-				-1.9
2,112,635	-				-1.1
2,112,639	-				-0.6
2,112,658	+				+0.7
2,112,663	+				+0.8
2,112,666	-				-0.2
2,112,671	-				-1.8
2,112,674	-				-0.3
2,112,676	-				+0.4
2,112,676	-				-1.7
2,112,680	+				-1.2
2,112,688	-				+0.6
2,112,688	-				+1.2
2,112,768	+				-0.9
2,112,768	+				-1.0
2,112,768	+				-0.2
2,112,775	+				+1.0
2,112,776	-				-0.2
2,112,776	-				-0.2
2,112,776	-				+0.8
2,112,776	-				+1.7
2,112,783	+				-0.6
2,112,791	+				+1.7
2,112,792	-				-0.4
2,112,803	+				-0.1
2,112,805	+				-1.4
2,112,819	+		BBR_RS19315	0.11	+0.1
2,112,827	-		BBR_RS19315	0.12	-0.0
2,112,847	+		BBR_RS19315	0.16	-0.5
2,112,877	-		BBR_RS19315	0.21	-0.7
2,112,887	+		BBR_RS19315	0.23	+0.0
2,112,887	+		BBR_RS19315	0.23	+0.3
2,112,895	-		BBR_RS19315	0.24	+0.8
2,112,895	-		BBR_RS19315	0.24	-2.8
2,112,908	+		BBR_RS19315	0.26	-0.1
2,112,948	+		BBR_RS19315	0.33	+0.7
2,112,973	+		BBR_RS19315	0.38	-1.5
2,112,981	-		BBR_RS19315	0.39	-0.1
2,113,079	+		BBR_RS19315	0.56	+0.4
2,113,087	+		BBR_RS19315	0.58	+0.4
2,113,087	-		BBR_RS19315	0.58	-0.0
2,113,095	-		BBR_RS19315	0.59	+1.3
2,113,116	-		BBR_RS19315	0.63	-1.6
2,113,143	-		BBR_RS19315	0.67	-0.3
2,113,151	+		BBR_RS19315	0.69	-1.3
2,113,171	+		BBR_RS19315	0.72	-1.0
2,113,181	-		BBR_RS19315	0.74	-1.6
2,113,196	+		BBR_RS19315	0.77	-0.9
2,113,207	-		BBR_RS19315	0.79	-0.0
2,113,220	+		BBR_RS19315	0.81	+0.0
2,113,232	+		BBR_RS19315	0.83	+0.1
2,113,289	+				+1.0
2,113,289	+				+1.1
2,113,298	+				+0.3
2,113,301	-				+0.9
2,113,316	+				+0.2
2,113,323	+				+0.3
2,113,331	-				+0.8
2,113,338	+				+1.6
2,113,338	+				+0.7
2,113,338	-				+0.5
2,113,346	+				+1.0
2,113,359	+				-0.7
2,113,359	+				+0.1
2,113,389	+				+2.8
2,113,389	+				-1.1
2,113,397	-				+0.9
2,113,412	+		BBR_RS19320	0.12	+0.1
2,113,419	+		BBR_RS19320	0.13	+0.5
2,113,420	-		BBR_RS19320	0.14	-0.2
2,113,420	-		BBR_RS19320	0.14	-0.2
2,113,420	-		BBR_RS19320	0.14	+0.8
2,113,433	-		BBR_RS19320	0.17	+0.8
2,113,465	-		BBR_RS19320	0.25	+0.8
2,113,465	-		BBR_RS19320	0.25	+1.6
2,113,465	-		BBR_RS19320	0.25	-1.9
2,113,505	+		BBR_RS19320	0.35	+0.8
2,113,528	+		BBR_RS19320	0.41	+1.7
2,113,528	+		BBR_RS19320	0.41	-0.3
2,113,528	+		BBR_RS19320	0.41	+1.3
2,113,536	-		BBR_RS19320	0.43	+0.1
2,113,536	-		BBR_RS19320	0.43	-2.9
2,113,536	-		BBR_RS19320	0.43	-1.5
2,113,541	-		BBR_RS19320	0.45	+1.3
2,113,549	-		BBR_RS19320	0.47	+0.6
2,113,558	+		BBR_RS19320	0.49	-1.3
2,113,558	+		BBR_RS19320	0.49	-0.8
2,113,559	-		BBR_RS19320	0.49	+0.1
2,113,566	-		BBR_RS19320	0.51	-1.8
2,113,566	-		BBR_RS19320	0.51	+1.0
2,113,566	-		BBR_RS19320	0.51	+0.0
2,113,566	-		BBR_RS19320	0.51	+0.7
2,113,570	-		BBR_RS19320	0.52	+0.8
2,113,593	-		BBR_RS19320	0.58	+0.5
2,113,603	-		BBR_RS19320	0.61	-0.6
2,113,626	-		BBR_RS19320	0.66	+0.1
2,113,642	-		BBR_RS19320	0.71	+0.0
2,113,642	-		BBR_RS19320	0.71	+2.2
2,113,644	-		BBR_RS19320	0.71	+1.1
2,113,644	-		BBR_RS19320	0.71	+0.4
2,113,644	-		BBR_RS19320	0.71	-0.0
2,113,644	-		BBR_RS19320	0.71	-0.5
2,113,644	-		BBR_RS19320	0.71	-1.2
2,113,644	-		BBR_RS19320	0.71	-0.2
2,113,673	-		BBR_RS19320	0.78	-0.5
2,113,686	-		BBR_RS19320	0.82	+1.1
2,113,747	-				+1.1
2,113,759	+				+0.4
2,113,765	+				-0.9
2,113,765	+				-0.6
2,113,765	+				+0.0
2,113,773	-				+0.7
2,113,773	-				+0.6
2,113,773	-				+0.3
2,113,778	-				-2.0
2,113,807	-		BBR_RS19325	0.19	-1.5
2,113,945	-		BBR_RS19325	0.61	-2.5
2,113,947	-		BBR_RS19325	0.62	-0.3
2,113,951	+		BBR_RS19325	0.63	+0.2
2,113,958	+		BBR_RS19325	0.65	-1.0
2,114,015	-		BBR_RS19325	0.83	-2.5
2,114,062	-				-1.7
2,114,168	+		BBR_RS21085	0.48	+1.2
2,114,168	+		BBR_RS21085	0.48	+0.4
2,114,189	+		BBR_RS21085	0.58	+0.5
2,114,209	-		BBR_RS21085	0.67	-1.8
2,114,225	+		BBR_RS21085	0.75	-1.4
2,114,230	+		BBR_RS21085	0.77	-0.4
2,114,230	+		BBR_RS21085	0.77	+0.4
2,114,247	+		BBR_RS21085	0.85	-2.3
2,114,247	+		BBR_RS21085	0.85	+0.4
2,114,261	+				+1.9
2,114,271	+				-0.6
2,114,271	+				+1.0
2,114,271	+				+0.0
2,114,279	-				-1.9
2,114,279	-				+0.7
2,114,279	-				+1.0
2,114,279	-				-0.9
2,114,279	-				-2.5
2,114,279	-				-0.6
2,114,281	-				+1.9
2,114,289	-				+0.7