Experiment: diet=StandardDiet; sample=FecalPellet; mouse4; day1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13205 and BBR_RS13210 are separated by 80 nucleotides BBR_RS13210 and BBR_RS13215 are separated by 3 nucleotides BBR_RS13215 and BBR_RS13220 are separated by 292 nucleotides
BBR_RS13205: BBR_RS13205 - PLP-dependent aminotransferase family protein, at 738,260 to 739,783
_RS13205
BBR_RS13210: BBR_RS13210 - anion transporter, at 739,864 to 741,042
_RS13210
BBR_RS13215: BBR_RS13215 - hypothetical protein, at 741,046 to 741,267
_RS13215
BBR_RS13220: BBR_RS13220 - hypothetical protein, at 741,560 to 742,018
_RS13220
Position (kb) 739
740
741
742 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 738.879 kb on - strand, within BBR_RS13205 at 738.879 kb on - strand, within BBR_RS13205 at 738.937 kb on - strand, within BBR_RS13205 at 739.024 kb on - strand, within BBR_RS13205 at 739.075 kb on + strand, within BBR_RS13205 at 739.083 kb on - strand, within BBR_RS13205 at 739.083 kb on - strand, within BBR_RS13205 at 739.085 kb on + strand, within BBR_RS13205 at 739.093 kb on - strand, within BBR_RS13205 at 739.093 kb on - strand, within BBR_RS13205 at 739.176 kb on - strand, within BBR_RS13205 at 739.212 kb on - strand, within BBR_RS13205 at 739.229 kb on - strand, within BBR_RS13205 at 739.236 kb on + strand, within BBR_RS13205 at 739.236 kb on + strand, within BBR_RS13205 at 739.236 kb on + strand, within BBR_RS13205 at 739.253 kb on + strand, within BBR_RS13205 at 739.254 kb on - strand, within BBR_RS13205 at 739.254 kb on - strand, within BBR_RS13205 at 739.254 kb on - strand, within BBR_RS13205 at 739.302 kb on + strand, within BBR_RS13205 at 739.302 kb on - strand, within BBR_RS13205 at 739.308 kb on + strand, within BBR_RS13205 at 739.315 kb on + strand, within BBR_RS13205 at 739.316 kb on - strand, within BBR_RS13205 at 739.321 kb on - strand, within BBR_RS13205 at 739.325 kb on + strand, within BBR_RS13205 at 739.325 kb on + strand, within BBR_RS13205 at 739.325 kb on + strand, within BBR_RS13205 at 739.330 kb on + strand, within BBR_RS13205 at 739.331 kb on + strand, within BBR_RS13205 at 739.334 kb on - strand, within BBR_RS13205 at 739.375 kb on - strand, within BBR_RS13205 at 739.398 kb on - strand, within BBR_RS13205 at 739.398 kb on - strand, within BBR_RS13205 at 739.401 kb on + strand, within BBR_RS13205 at 739.419 kb on + strand, within BBR_RS13205 at 739.429 kb on + strand, within BBR_RS13205 at 739.429 kb on + strand, within BBR_RS13205 at 739.429 kb on + strand, within BBR_RS13205 at 739.429 kb on + strand, within BBR_RS13205 at 739.433 kb on + strand, within BBR_RS13205 at 739.433 kb on + strand, within BBR_RS13205 at 739.437 kb on - strand, within BBR_RS13205 at 739.437 kb on - strand, within BBR_RS13205 at 739.437 kb on - strand, within BBR_RS13205 at 739.500 kb on - strand, within BBR_RS13205 at 739.523 kb on + strand, within BBR_RS13205 at 739.537 kb on + strand, within BBR_RS13205 at 739.537 kb on + strand, within BBR_RS13205 at 739.545 kb on - strand, within BBR_RS13205 at 739.545 kb on - strand, within BBR_RS13205 at 739.545 kb on - strand, within BBR_RS13205 at 739.545 kb on - strand, within BBR_RS13205 at 739.547 kb on + strand, within BBR_RS13205 at 739.555 kb on - strand, within BBR_RS13205 at 739.567 kb on - strand, within BBR_RS13205 at 739.578 kb on + strand, within BBR_RS13205 at 739.582 kb on + strand, within BBR_RS13205 at 739.586 kb on - strand, within BBR_RS13205 at 739.607 kb on - strand, within BBR_RS13205 at 739.665 kb on - strand at 739.690 kb on - strand at 739.754 kb on + strand at 739.754 kb on + strand at 739.762 kb on - strand at 739.762 kb on - strand at 739.769 kb on + strand at 739.932 kb on + strand at 739.969 kb on + strand at 739.972 kb on + strand at 739.978 kb on + strand at 739.978 kb on + strand at 740.032 kb on + strand, within BBR_RS13210 at 740.102 kb on - strand, within BBR_RS13210 at 740.104 kb on + strand, within BBR_RS13210 at 740.140 kb on + strand, within BBR_RS13210 at 740.143 kb on - strand, within BBR_RS13210 at 740.194 kb on - strand, within BBR_RS13210 at 740.218 kb on + strand, within BBR_RS13210 at 740.225 kb on - strand, within BBR_RS13210 at 740.244 kb on + strand, within BBR_RS13210 at 740.260 kb on + strand, within BBR_RS13210 at 740.268 kb on - strand, within BBR_RS13210 at 740.268 kb on - strand, within BBR_RS13210 at 740.479 kb on + strand, within BBR_RS13210 at 740.549 kb on - strand, within BBR_RS13210 at 740.595 kb on + strand, within BBR_RS13210 at 740.659 kb on + strand, within BBR_RS13210 at 740.672 kb on - strand, within BBR_RS13210 at 740.677 kb on + strand, within BBR_RS13210 at 740.753 kb on - strand, within BBR_RS13210 at 740.770 kb on - strand, within BBR_RS13210 at 740.815 kb on - strand, within BBR_RS13210 at 740.878 kb on - strand, within BBR_RS13210 at 741.000 kb on + strand at 741.072 kb on - strand, within BBR_RS13215 at 741.111 kb on - strand, within BBR_RS13215 at 741.226 kb on + strand, within BBR_RS13215 at 741.276 kb on + strand at 741.278 kb on + strand at 741.278 kb on + strand at 741.284 kb on - strand at 741.286 kb on - strand at 741.478 kb on + strand at 741.478 kb on + strand at 741.486 kb on - strand at 741.486 kb on - strand at 741.493 kb on - strand at 741.500 kb on + strand at 741.500 kb on + strand at 741.618 kb on + strand, within BBR_RS13220 at 741.742 kb on + strand, within BBR_RS13220 at 741.750 kb on - strand, within BBR_RS13220 at 741.751 kb on - strand, within BBR_RS13220 at 741.823 kb on + strand, within BBR_RS13220 at 741.848 kb on - strand, within BBR_RS13220 at 741.850 kb on - strand, within BBR_RS13220 at 741.956 kb on + strand, within BBR_RS13220 at 741.963 kb on + strand, within BBR_RS13220 at 741.963 kb on + strand, within BBR_RS13220 at 741.963 kb on + strand, within BBR_RS13220 at 741.965 kb on + strand, within BBR_RS13220 at 741.988 kb on - strand at 741.990 kb on - strand at 741.990 kb on - strand at 742.006 kb on - strand at 742.023 kb on - strand at 742.041 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse4; day1 remove 738,879 - BBR_RS13205 0.41 -1.1 738,879 - BBR_RS13205 0.41 -0.0 738,937 - BBR_RS13205 0.44 -2.1 739,024 - BBR_RS13205 0.50 -1.3 739,075 + BBR_RS13205 0.53 -0.2 739,083 - BBR_RS13205 0.54 +0.4 739,083 - BBR_RS13205 0.54 +1.1 739,085 + BBR_RS13205 0.54 +1.2 739,093 - BBR_RS13205 0.55 +0.6 739,093 - BBR_RS13205 0.55 +0.2 739,176 - BBR_RS13205 0.60 +0.5 739,212 - BBR_RS13205 0.62 -1.3 739,229 - BBR_RS13205 0.64 -2.4 739,236 + BBR_RS13205 0.64 -0.2 739,236 + BBR_RS13205 0.64 -1.2 739,236 + BBR_RS13205 0.64 +0.6 739,253 + BBR_RS13205 0.65 -1.2 739,254 - BBR_RS13205 0.65 +0.5 739,254 - BBR_RS13205 0.65 -0.5 739,254 - BBR_RS13205 0.65 -0.6 739,302 + BBR_RS13205 0.68 +0.9 739,302 - BBR_RS13205 0.68 +0.7 739,308 + BBR_RS13205 0.69 -1.8 739,315 + BBR_RS13205 0.69 -1.9 739,316 - BBR_RS13205 0.69 +0.9 739,321 - BBR_RS13205 0.70 +0.1 739,325 + BBR_RS13205 0.70 -2.3 739,325 + BBR_RS13205 0.70 +0.6 739,325 + BBR_RS13205 0.70 +0.3 739,330 + BBR_RS13205 0.70 +1.2 739,331 + BBR_RS13205 0.70 +0.0 739,334 - BBR_RS13205 0.70 +0.6 739,375 - BBR_RS13205 0.73 -0.0 739,398 - BBR_RS13205 0.75 -0.5 739,398 - BBR_RS13205 0.75 +0.6 739,401 + BBR_RS13205 0.75 -0.8 739,419 + BBR_RS13205 0.76 +0.1 739,429 + BBR_RS13205 0.77 +0.3 739,429 + BBR_RS13205 0.77 -2.2 739,429 + BBR_RS13205 0.77 -0.7 739,429 + BBR_RS13205 0.77 +0.7 739,433 + BBR_RS13205 0.77 -1.7 739,433 + BBR_RS13205 0.77 -2.1 739,437 - BBR_RS13205 0.77 -2.5 739,437 - BBR_RS13205 0.77 -1.4 739,437 - BBR_RS13205 0.77 +0.1 739,500 - BBR_RS13205 0.81 -2.2 739,523 + BBR_RS13205 0.83 +0.3 739,537 + BBR_RS13205 0.84 -1.7 739,537 + BBR_RS13205 0.84 +0.8 739,545 - BBR_RS13205 0.84 -0.8 739,545 - BBR_RS13205 0.84 +0.7 739,545 - BBR_RS13205 0.84 +0.7 739,545 - BBR_RS13205 0.84 -1.0 739,547 + BBR_RS13205 0.84 -2.0 739,555 - BBR_RS13205 0.85 -0.0 739,567 - BBR_RS13205 0.86 +0.3 739,578 + BBR_RS13205 0.86 -2.5 739,582 + BBR_RS13205 0.87 -2.0 739,586 - BBR_RS13205 0.87 -2.1 739,607 - BBR_RS13205 0.88 +1.2 739,665 - -1.6 739,690 - -2.2 739,754 + -0.3 739,754 + +1.8 739,762 - -0.0 739,762 - +0.5 739,769 + -0.9 739,932 + -1.6 739,969 + -1.1 739,972 + -0.5 739,978 + -1.9 739,978 + -0.8 740,032 + BBR_RS13210 0.14 +0.3 740,102 - BBR_RS13210 0.20 -0.1 740,104 + BBR_RS13210 0.20 +0.9 740,140 + BBR_RS13210 0.23 -1.7 740,143 - BBR_RS13210 0.24 -2.0 740,194 - BBR_RS13210 0.28 -2.1 740,218 + BBR_RS13210 0.30 -1.1 740,225 - BBR_RS13210 0.31 -1.2 740,244 + BBR_RS13210 0.32 -2.3 740,260 + BBR_RS13210 0.34 -3.1 740,268 - BBR_RS13210 0.34 -1.8 740,268 - BBR_RS13210 0.34 -2.6 740,479 + BBR_RS13210 0.52 -0.8 740,549 - BBR_RS13210 0.58 -3.1 740,595 + BBR_RS13210 0.62 -2.0 740,659 + BBR_RS13210 0.67 +1.9 740,672 - BBR_RS13210 0.69 +1.8 740,677 + BBR_RS13210 0.69 -1.3 740,753 - BBR_RS13210 0.75 -1.8 740,770 - BBR_RS13210 0.77 -1.7 740,815 - BBR_RS13210 0.81 -2.4 740,878 - BBR_RS13210 0.86 -0.9 741,000 + -2.8 741,072 - BBR_RS13215 0.12 -1.4 741,111 - BBR_RS13215 0.29 +0.5 741,226 + BBR_RS13215 0.81 +0.7 741,276 + -0.0 741,278 + -1.2 741,278 + +1.1 741,284 - -0.3 741,286 - +1.6 741,478 + +0.3 741,478 + +1.1 741,486 - +0.4 741,486 - +1.0 741,493 - +1.1 741,500 + -1.4 741,500 + +0.5 741,618 + BBR_RS13220 0.13 +1.1 741,742 + BBR_RS13220 0.40 +0.5 741,750 - BBR_RS13220 0.41 +0.6 741,751 - BBR_RS13220 0.42 -0.1 741,823 + BBR_RS13220 0.57 +1.6 741,848 - BBR_RS13220 0.63 +0.5 741,850 - BBR_RS13220 0.63 +1.3 741,956 + BBR_RS13220 0.86 +0.0 741,963 + BBR_RS13220 0.88 -1.0 741,963 + BBR_RS13220 0.88 -0.0 741,963 + BBR_RS13220 0.88 -2.9 741,965 + BBR_RS13220 0.88 +0.5 741,988 - -1.5 741,990 - -1.3 741,990 - +1.6 742,006 - +1.6 742,023 - -1.5 742,041 - -1.5
Or see this region's nucleotide sequence