Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_006543

Experiment: Acetylated xylan 10 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetylated xylan 10 g/L (C)
2,934,911	-		ABIE53_006542	0.33	-0.4
2,934,911	-		ABIE53_006542	0.33	+2.1
2,934,939	+		ABIE53_006542	0.36	+3.9
2,934,940	-		ABIE53_006542	0.36	+2.7
2,934,940	-		ABIE53_006542	0.36	-1.4
2,935,141	-		ABIE53_006542	0.59	+2.1
2,935,141	-		ABIE53_006542	0.59	-0.9
2,935,160	+		ABIE53_006542	0.62	+0.1
2,935,160	+		ABIE53_006542	0.62	-0.3
2,935,161	-		ABIE53_006542	0.62	-0.5
2,935,161	-		ABIE53_006542	0.62	+0.4
2,935,161	-		ABIE53_006542	0.62	-0.5
2,935,163	+		ABIE53_006542	0.62	-0.7
2,935,188	+		ABIE53_006542	0.65	-2.7
2,935,189	-		ABIE53_006542	0.65	+3.1
2,935,189	-		ABIE53_006542	0.65	+0.4
2,935,189	-		ABIE53_006542	0.65	-2.0
2,935,284	+		ABIE53_006542	0.76	+1.1
2,935,285	-		ABIE53_006542	0.76	-1.3
2,935,297	+		ABIE53_006542	0.77	+0.1
2,935,298	-		ABIE53_006542	0.77	-0.7
2,935,298	-		ABIE53_006542	0.77	-1.7
2,935,298	-		ABIE53_006542	0.77	+1.1
2,935,442	-				-0.1
2,935,565	-				+0.5
2,935,565	-				+2.7
2,935,592	+				+1.1
2,935,592	+				-0.5
2,935,592	+				-1.5
2,935,762	+		ABIE53_006543	0.16	-0.1
2,935,762	+		ABIE53_006543	0.16	-1.9
2,935,763	-		ABIE53_006543	0.17	-2.6
2,935,763	-		ABIE53_006543	0.17	+1.1
2,935,763	-		ABIE53_006543	0.17	+1.5
2,935,763	-		ABIE53_006543	0.17	-0.2
2,935,781	-		ABIE53_006543	0.18	+1.1
2,935,838	+		ABIE53_006543	0.25	-2.2
2,935,839	-		ABIE53_006543	0.25	-1.6
2,936,068	+		ABIE53_006543	0.49	+0.1
2,936,069	-		ABIE53_006543	0.49	-0.0
2,936,069	-		ABIE53_006543	0.49	-2.9
2,936,069	-		ABIE53_006543	0.49	+0.1
2,936,106	-		ABIE53_006543	0.53	-1.7
2,936,110	+		ABIE53_006543	0.54	+0.7
2,936,110	+		ABIE53_006543	0.54	+0.6
2,936,111	-		ABIE53_006543	0.54	-0.5
2,936,305	+		ABIE53_006543	0.75	+1.1
2,936,317	+		ABIE53_006543	0.76	+3.1
2,936,318	-		ABIE53_006543	0.76	-1.0
2,936,566	+				+0.1
2,936,567	-				-1.2
2,936,567	-				+0.1
2,936,567	-				+0.5
2,936,567	-				+1.1
2,936,609	+				-0.9
2,936,633	+		ABIE53_006544	0.13	-0.5
2,936,634	-		ABIE53_006544	0.14	+1.9
2,936,634	-		ABIE53_006544	0.14	-1.3
2,936,634	-		ABIE53_006544	0.14	+0.4
2,936,634	-		ABIE53_006544	0.14	-1.9
2,936,657	+		ABIE53_006544	0.23	+0.1
2,936,822	+		ABIE53_006544	0.88	+2.1
2,936,823	-		ABIE53_006544	0.89	-0.0
2,936,823	-		ABIE53_006544	0.89	+1.1
2,936,823	-		ABIE53_006544	0.89	+0.9
2,936,850	+				-2.7
2,936,851	-				+2.1
2,936,997	+		ABIE53_006545	0.46	+1.3
2,936,997	+		ABIE53_006545	0.46	-1.2
2,936,998	-		ABIE53_006545	0.47	-0.7
2,936,998	-		ABIE53_006545	0.47	-1.5
2,937,138	+				+1.1
2,937,139	-				+1.1
2,937,379	+				-1.3
2,937,379	+				+0.8
2,937,380	-				-0.0
2,937,380	-				-2.2
2,937,523	+				-2.3
2,937,524	-				+1.5