Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005630

Experiment: Acetylated xylan 10 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetylated xylan 10 g/L (C)
1,925,710	+				+0.3
1,925,711	-				-2.1
1,925,806	-				+1.3
1,925,807	+				+2.3
1,925,957	-		ABIE53_005629	0.22	+2.3
1,925,976	+		ABIE53_005629	0.24	+1.3
1,926,049	-		ABIE53_005629	0.33	-0.7
1,926,049	-		ABIE53_005629	0.33	-3.0
1,926,053	+		ABIE53_005629	0.34	-1.3
1,926,053	+		ABIE53_005629	0.34	+3.6
1,926,054	-		ABIE53_005629	0.34	+1.3
1,926,054	-		ABIE53_005629	0.34	+0.3
1,926,057	+		ABIE53_005629	0.34	-0.3
1,926,057	+		ABIE53_005629	0.34	-2.2
1,926,058	-		ABIE53_005629	0.34	-1.9
1,926,066	+		ABIE53_005629	0.35	+1.3
1,926,066	+		ABIE53_005629	0.35	-0.7
1,926,085	+		ABIE53_005629	0.38	+1.0
1,926,122	+		ABIE53_005629	0.42	-3.6
1,926,122	+		ABIE53_005629	0.42	+0.3
1,926,122	+		ABIE53_005629	0.42	+0.1
1,926,122	+		ABIE53_005629	0.42	-0.3
1,926,122	+		ABIE53_005629	0.42	-0.3
1,926,122	+		ABIE53_005629	0.42	+1.3
1,926,122	+		ABIE53_005629	0.42	+1.3
1,926,123	-		ABIE53_005629	0.42	+1.3
1,926,123	-		ABIE53_005629	0.42	-1.4
1,926,123	-		ABIE53_005629	0.42	-1.1
1,926,123	-		ABIE53_005629	0.42	-0.3
1,926,137	+		ABIE53_005629	0.44	+0.3
1,926,144	+		ABIE53_005629	0.45	-3.1
1,926,145	-		ABIE53_005629	0.45	-0.9
1,926,165	+		ABIE53_005629	0.48	+1.3
1,926,165	+		ABIE53_005629	0.48	-0.3
1,926,166	+		ABIE53_005629	0.48	-1.0
1,926,166	-		ABIE53_005629	0.48	-3.3
1,926,166	-		ABIE53_005629	0.48	-1.1
1,926,186	+		ABIE53_005629	0.50	-1.1
1,926,215	+		ABIE53_005629	0.54	-0.3
1,926,215	+		ABIE53_005629	0.54	-2.1
1,926,215	+		ABIE53_005629	0.54	+2.3
1,926,216	-		ABIE53_005629	0.54	-2.9
1,926,216	-		ABIE53_005629	0.54	+0.3
1,926,268	+		ABIE53_005629	0.60	-1.9
1,926,269	-		ABIE53_005629	0.60	+1.3
1,926,478	+		ABIE53_005629	0.86	-0.7
1,926,478	+		ABIE53_005629	0.86	+1.3
1,926,479	-		ABIE53_005629	0.86	+0.3
1,926,479	-		ABIE53_005629	0.86	-1.1
1,926,506	+		ABIE53_005629	0.90	-0.7
1,926,506	+		ABIE53_005629	0.90	+0.8
1,926,507	-		ABIE53_005629	0.90	-1.1
1,926,632	+				+1.3
1,926,639	+				+1.3
1,926,639	+				+1.3
1,926,639	+				+0.3
1,926,640	-				+0.3
1,926,640	-				+1.3
1,926,640	-				+0.3
1,926,640	-				+0.3
1,926,657	+				+1.9
1,926,657	+				-0.3
1,926,657	+				-0.6
1,926,658	-				-0.2
1,926,660	+				+1.8
1,926,661	-				-1.9
1,926,661	-				+0.3
1,926,661	-				+2.8
1,926,690	+				-1.3
1,926,878	+		ABIE53_005630	0.21	-0.9
1,926,878	+		ABIE53_005630	0.21	+0.3
1,926,878	+		ABIE53_005630	0.21	-1.6
1,926,878	+		ABIE53_005630	0.21	-3.2
1,926,879	-		ABIE53_005630	0.21	+0.3
1,926,879	-		ABIE53_005630	0.21	+1.3
1,926,879	-		ABIE53_005630	0.21	-1.6
1,926,922	+		ABIE53_005630	0.26	-2.4
1,926,922	+		ABIE53_005630	0.26	+0.3
1,926,922	+		ABIE53_005630	0.26	+1.3
1,926,922	+		ABIE53_005630	0.26	-1.7
1,926,922	+		ABIE53_005630	0.26	-0.9
1,926,923	-		ABIE53_005630	0.26	+1.7
1,926,923	-		ABIE53_005630	0.26	-1.5
1,926,923	-		ABIE53_005630	0.26	-1.6
1,926,923	-		ABIE53_005630	0.26	-0.7
1,926,926	-		ABIE53_005630	0.26	+1.8
1,926,926	-		ABIE53_005630	0.26	-1.1
1,926,998	-		ABIE53_005630	0.33	+3.3
1,927,030	+		ABIE53_005630	0.36	+1.3
1,927,030	+		ABIE53_005630	0.36	+1.3
1,927,030	+		ABIE53_005630	0.36	+1.3
1,927,031	-		ABIE53_005630	0.36	+0.9
1,927,031	-		ABIE53_005630	0.36	-2.3
1,927,031	-		ABIE53_005630	0.36	+1.5
1,927,031	-		ABIE53_005630	0.36	+1.3
1,927,031	-		ABIE53_005630	0.36	-2.8
1,927,031	-		ABIE53_005630	0.36	-0.7
1,927,032	+		ABIE53_005630	0.36	+1.3
1,927,032	+		ABIE53_005630	0.36	+1.3
1,927,033	-		ABIE53_005630	0.36	+1.3
1,927,033	-		ABIE53_005630	0.36	-0.7
1,927,033	-		ABIE53_005630	0.36	-0.3
1,927,033	-		ABIE53_005630	0.36	-0.7
1,927,033	-		ABIE53_005630	0.36	+1.3
1,927,033	-		ABIE53_005630	0.36	+0.7
1,927,170	+		ABIE53_005630	0.50	-0.9
1,927,170	+		ABIE53_005630	0.50	-1.7
1,927,170	+		ABIE53_005630	0.50	+0.3
1,927,170	+		ABIE53_005630	0.50	+1.1
1,927,170	+		ABIE53_005630	0.50	+1.3
1,927,269	+		ABIE53_005630	0.59	+0.3
1,927,269	+		ABIE53_005630	0.59	+0.8
1,927,270	-		ABIE53_005630	0.60	+1.3
1,927,298	+		ABIE53_005630	0.62	+0.7
1,927,298	+		ABIE53_005630	0.62	+1.3
1,927,298	+		ABIE53_005630	0.62	+2.3
1,927,298	+		ABIE53_005630	0.62	+2.3
1,927,298	+		ABIE53_005630	0.62	-2.2
1,927,298	+		ABIE53_005630	0.62	+0.9
1,927,298	+		ABIE53_005630	0.62	-1.6
1,927,298	+		ABIE53_005630	0.62	-2.2
1,927,299	-		ABIE53_005630	0.62	-2.3
1,927,299	-		ABIE53_005630	0.62	-0.3
1,927,299	-		ABIE53_005630	0.62	-3.3
1,927,316	+		ABIE53_005630	0.64	-1.3
1,927,317	-		ABIE53_005630	0.64	-1.6
1,927,332	+		ABIE53_005630	0.66	+1.3
1,927,512	-		ABIE53_005630	0.83	+1.3
1,927,634	-				+0.3
1,927,682	-				+1.3
1,927,702	+				-1.6
1,927,703	-				-2.4
1,927,734	+				-1.3
1,927,734	+				-3.5
1,927,735	-				-0.6
1,927,735	-				+1.3
1,927,747	-				+0.3
1,927,747	-				+2.1
1,927,819	-				-2.9
1,927,914	+				-0.7
1,927,914	+				-0.3
1,927,914	+				-0.3
1,927,914	+				-0.1
1,927,914	+				-0.7
1,927,914	+				-0.7
1,927,914	+				-1.5
1,927,914	+				+1.1
1,927,914	+				+1.3
1,927,914	+				+0.3
1,927,915	-				+1.3
1,927,915	-				-3.6
1,928,012	+		ABIE53_005631	0.16	-2.1
1,928,012	+		ABIE53_005631	0.16	-3.0
1,928,051	-		ABIE53_005631	0.19	+1.3
1,928,073	+		ABIE53_005631	0.20	-2.4
1,928,073	+		ABIE53_005631	0.20	-0.3
1,928,073	+		ABIE53_005631	0.20	-1.7
1,928,073	+		ABIE53_005631	0.20	+0.3
1,928,074	-		ABIE53_005631	0.21	+1.3
1,928,074	-		ABIE53_005631	0.21	+1.3
1,928,074	-		ABIE53_005631	0.21	+0.6
1,928,236	+		ABIE53_005631	0.31	-0.3
1,928,306	+		ABIE53_005631	0.36	-0.0
1,928,382	+		ABIE53_005631	0.41	-0.9
1,928,382	+		ABIE53_005631	0.41	+0.3
1,928,430	+		ABIE53_005631	0.44	-0.2
1,928,548	+		ABIE53_005631	0.52	+2.6
1,928,549	-		ABIE53_005631	0.52	-2.5
1,928,562	+		ABIE53_005631	0.53	+2.8
1,928,563	-		ABIE53_005631	0.53	-2.1
1,928,563	-		ABIE53_005631	0.53	-0.3
1,928,563	-		ABIE53_005631	0.53	-2.2
1,928,563	-		ABIE53_005631	0.53	-2.4
1,928,594	-		ABIE53_005631	0.55	+0.3