Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005110

Experiment: Acetylated xylan 10 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetylated xylan 10 g/L (C)
1,360,971	+		ABIE53_005109	0.56	-1.0
1,360,971	+		ABIE53_005109	0.56	+1.0
1,360,972	-		ABIE53_005109	0.57	+1.0
1,360,972	-		ABIE53_005109	0.57	-0.0
1,360,972	-		ABIE53_005109	0.57	-0.8
1,360,972	-		ABIE53_005109	0.57	-0.8
1,361,026	+		ABIE53_005109	0.59	-1.4
1,361,026	+		ABIE53_005109	0.59	-2.2
1,361,027	-		ABIE53_005109	0.59	-0.4
1,361,334	+		ABIE53_005109	0.73	+1.0
1,361,415	+		ABIE53_005109	0.76	-1.2
1,361,415	+		ABIE53_005109	0.76	-0.4
1,361,416	-		ABIE53_005109	0.76	-1.4
1,361,416	-		ABIE53_005109	0.76	+0.4
1,361,416	-		ABIE53_005109	0.76	+1.3
1,361,562	+		ABIE53_005109	0.83	-0.6
1,361,643	+		ABIE53_005109	0.87	+1.0
1,361,643	+		ABIE53_005109	0.87	+2.0
1,361,643	+		ABIE53_005109	0.87	-1.7
1,361,643	+		ABIE53_005109	0.87	+1.0
1,361,644	-		ABIE53_005109	0.87	+2.0
1,361,644	-		ABIE53_005109	0.87	-0.4
1,361,644	-		ABIE53_005109	0.87	-1.2
1,361,644	-		ABIE53_005109	0.87	+0.0
1,361,872	-				-0.4
1,361,908	+				-1.5
1,361,909	-				-1.0
1,362,097	+		ABIE53_005110	0.16	-1.2
1,362,100	+		ABIE53_005110	0.16	+1.0
1,362,100	+		ABIE53_005110	0.16	-0.0
1,362,100	+		ABIE53_005110	0.16	-1.8
1,362,100	+		ABIE53_005110	0.16	-3.3
1,362,100	+		ABIE53_005110	0.16	+1.4
1,362,101	-		ABIE53_005110	0.17	-1.5
1,362,190	+		ABIE53_005110	0.25	+1.0
1,362,190	+		ABIE53_005110	0.25	-1.4
1,362,191	-		ABIE53_005110	0.26	-1.9
1,362,191	-		ABIE53_005110	0.26	-3.3
1,362,191	-		ABIE53_005110	0.26	+1.0
1,362,191	-		ABIE53_005110	0.26	-0.6
1,362,224	+		ABIE53_005110	0.29	-2.2
1,362,225	-		ABIE53_005110	0.29	-2.6
1,362,401	-		ABIE53_005110	0.47	-0.0
1,362,401	-		ABIE53_005110	0.47	-3.4
1,362,401	-		ABIE53_005110	0.47	-1.4
1,362,441	+		ABIE53_005110	0.50	-0.6
1,362,570	-		ABIE53_005110	0.63	+0.5
1,362,575	+		ABIE53_005110	0.64	-0.0
1,362,576	-		ABIE53_005110	0.64	-0.0
1,362,588	+		ABIE53_005110	0.65	-1.0
1,362,588	+		ABIE53_005110	0.65	-1.0
1,362,588	+		ABIE53_005110	0.65	-3.0
1,362,589	-		ABIE53_005110	0.65	+1.5
1,362,589	-		ABIE53_005110	0.65	-0.2
1,362,621	+		ABIE53_005110	0.68	-0.0
1,362,675	-		ABIE53_005110	0.74	-0.4
1,362,675	-		ABIE53_005110	0.74	-0.3
1,362,675	-		ABIE53_005110	0.74	-0.8
1,362,862	+				+0.0
1,362,863	-				-0.0
1,362,863	-				+1.0
1,363,057	-		ABIE53_005111	0.14	+2.5
1,363,199	+		ABIE53_005111	0.33	+2.3
1,363,199	+		ABIE53_005111	0.33	-1.4
1,363,199	+		ABIE53_005111	0.33	+1.0
1,363,199	+		ABIE53_005111	0.33	-0.0
1,363,200	-		ABIE53_005111	0.33	-1.8
1,363,200	-		ABIE53_005111	0.33	-0.0
1,363,200	-		ABIE53_005111	0.33	+3.3
1,363,200	-		ABIE53_005111	0.33	+0.6
1,363,200	-		ABIE53_005111	0.33	-1.6
1,363,200	-		ABIE53_005111	0.33	-2.1
1,363,200	-		ABIE53_005111	0.33	+0.5
1,363,200	-		ABIE53_005111	0.33	+0.7
1,363,200	-		ABIE53_005111	0.33	-0.0
1,363,200	-		ABIE53_005111	0.33	-2.3
1,363,218	+		ABIE53_005111	0.35	-0.0
1,363,482	+		ABIE53_005111	0.70	-0.2
1,363,482	+		ABIE53_005111	0.70	-0.6
1,363,482	+		ABIE53_005111	0.70	+2.0
1,363,483	-		ABIE53_005111	0.70	+1.9
1,363,696	+				+3.8
1,363,696	+				+1.0
1,363,696	+				+1.0
1,363,696	+				+2.0
1,363,716	+				-2.4
1,363,716	+				-2.1
1,363,716	+				+2.0
1,363,716	+				-1.4
1,363,716	+				-0.6
1,363,717	-				-2.4
1,363,717	-				-0.0
1,363,717	-				-0.0
1,363,717	-				-0.9
1,363,791	+				+1.0
1,363,815	+				-0.6
1,363,816	-				-2.9
1,363,816	-				-0.0
1,363,836	+				-1.4
1,363,836	+				-0.5
1,363,837	-				-0.6
1,363,837	-				-2.2
1,363,846	+				+2.0