Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004933

Experiment: Acetylated xylan 10 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetylated xylan 10 g/L (C)
1,150,200	-		ABIE53_004932	0.38	+0.9
1,150,285	-		ABIE53_004932	0.45	-2.4
1,150,326	+		ABIE53_004932	0.49	+1.9
1,150,327	-		ABIE53_004932	0.49	-0.6
1,150,327	-		ABIE53_004932	0.49	-1.2
1,150,347	+		ABIE53_004932	0.51	-1.9
1,150,348	-		ABIE53_004932	0.51	+0.4
1,150,348	-		ABIE53_004932	0.51	+0.4
1,150,380	+		ABIE53_004932	0.53	-0.5
1,150,380	+		ABIE53_004932	0.53	-0.6
1,150,381	-		ABIE53_004932	0.53	-1.3
1,150,381	-		ABIE53_004932	0.53	-0.1
1,150,467	-		ABIE53_004932	0.61	-2.4
1,150,560	-		ABIE53_004932	0.68	-0.6
1,150,560	-		ABIE53_004932	0.68	-0.9
1,150,560	-		ABIE53_004932	0.68	-2.2
1,150,748	-		ABIE53_004932	0.84	-0.1
1,150,966	+				-1.4
1,150,966	+				-0.1
1,150,967	-				-0.1
1,150,967	-				-2.4
1,151,084	+				-1.1
1,151,085	-				-0.1
1,151,085	-				+0.7
1,151,109	+				-1.5
1,151,110	-				+0.9
1,151,112	+				-1.6
1,151,112	+				+1.7
1,151,112	+				-0.6
1,151,113	-				+1.5
1,151,113	-				+0.9
1,151,113	-				-0.6
1,151,113	-				+3.5
1,151,113	-				+0.1
1,151,113	-				-0.9
1,151,115	+				-0.1
1,151,115	+				-2.4
1,151,116	-				+0.9
1,151,116	-				+0.9
1,151,488	+		ABIE53_004933	0.13	-0.1
1,151,489	-		ABIE53_004933	0.13	-0.6
1,151,489	-		ABIE53_004933	0.13	+0.9
1,151,489	-		ABIE53_004933	0.13	+0.9
1,151,489	-		ABIE53_004933	0.13	-0.6
1,151,489	-		ABIE53_004933	0.13	+3.5
1,151,569	+		ABIE53_004933	0.17	-1.1
1,151,569	+		ABIE53_004933	0.17	-0.1
1,151,569	+		ABIE53_004933	0.17	-1.4
1,151,570	-		ABIE53_004933	0.17	-2.1
1,151,743	+		ABIE53_004933	0.24	+0.1
1,151,744	-		ABIE53_004933	0.24	+0.4
1,151,744	-		ABIE53_004933	0.24	-0.6
1,151,744	-		ABIE53_004933	0.24	+0.1
1,151,766	+		ABIE53_004933	0.25	+0.9
1,151,766	+		ABIE53_004933	0.25	+0.4
1,151,766	+		ABIE53_004933	0.25	+0.9
1,151,766	+		ABIE53_004933	0.25	-0.3
1,151,766	+		ABIE53_004933	0.25	+0.7
1,151,767	-		ABIE53_004933	0.25	-1.3
1,151,767	-		ABIE53_004933	0.25	+0.8
1,151,947	+		ABIE53_004933	0.33	+1.3
1,152,055	+		ABIE53_004933	0.38	-1.9
1,152,226	+		ABIE53_004933	0.46	-2.4
1,152,226	+		ABIE53_004933	0.46	+0.9
1,152,257	+		ABIE53_004933	0.47	-0.2
1,152,290	-		ABIE53_004933	0.48	-2.0
1,152,301	+		ABIE53_004933	0.49	+0.9
1,152,302	-		ABIE53_004933	0.49	-0.6
1,152,426	+		ABIE53_004933	0.54	-2.1
1,152,499	+		ABIE53_004933	0.58	-1.4
1,152,499	+		ABIE53_004933	0.58	+0.9
1,152,499	+		ABIE53_004933	0.58	-1.1
1,152,500	-		ABIE53_004933	0.58	-0.1
1,152,500	-		ABIE53_004933	0.58	-0.4
1,152,500	-		ABIE53_004933	0.58	+0.4
1,152,557	+		ABIE53_004933	0.60	-1.4
1,152,557	+		ABIE53_004933	0.60	-2.4
1,152,557	+		ABIE53_004933	0.60	+2.7
1,152,557	+		ABIE53_004933	0.60	-1.4
1,152,558	-		ABIE53_004933	0.60	-1.4
1,152,579	+		ABIE53_004933	0.61	-1.4
1,152,592	+		ABIE53_004933	0.62	-0.6
1,152,593	-		ABIE53_004933	0.62	-1.1
1,152,608	+		ABIE53_004933	0.62	-1.4
1,152,608	+		ABIE53_004933	0.62	-2.6
1,152,707	-		ABIE53_004933	0.67	+0.4
1,152,769	+		ABIE53_004933	0.70	-1.6
1,152,770	-		ABIE53_004933	0.70	+0.7
1,152,770	-		ABIE53_004933	0.70	-0.4
1,152,770	-		ABIE53_004933	0.70	-0.9
1,152,770	-		ABIE53_004933	0.70	+3.6
1,153,205	+		ABIE53_004933	0.89	-1.0
1,153,205	+		ABIE53_004933	0.89	-3.4
1,153,434	+				-3.0
1,153,434	+				-2.2
1,153,434	+				-1.4
1,153,435	-				+1.0
1,153,435	-				+0.4
1,153,435	-				+1.0
1,153,435	-				-0.6
1,153,435	-				-1.0
1,153,472	+				-1.4
1,153,534	+		ABIE53_004934	0.13	-0.0
1,153,878	+		ABIE53_004934	0.88	+2.0
1,153,878	+		ABIE53_004934	0.88	+1.5
1,153,879	-		ABIE53_004934	0.88	-3.4
1,153,879	-		ABIE53_004934	0.88	+2.0
1,153,879	-		ABIE53_004934	0.88	-0.4
1,153,966	+				+1.0
1,153,966	+				-1.9
1,153,966	+				+2.5
1,154,057	+				-1.0
1,154,057	+				-0.9
1,154,057	+				-0.7
1,154,057	+				-2.2
1,154,057	+				-3.4
1,154,057	+				-2.7
1,154,057	+				+2.0
1,154,057	+				-1.9
1,154,057	+				-0.6
1,154,058	-				+0.4
1,154,058	-				+1.0
1,154,058	-				+1.0
1,154,058	-				-2.2
1,154,058	-				+2.0
1,154,058	-				-0.4
1,154,070	+				-3.1
1,154,070	+				-1.6
1,154,071	-				+0.4
1,154,092	-				-2.0
1,154,095	+				-1.0
1,154,096	-				+2.0
1,154,101	+				-0.4
1,154,123	+				-2.2
1,154,133	+				+1.0
1,154,140	+				+1.0
1,154,140	+				-2.2
1,154,140	+				+1.0
1,154,141	-				+0.6
1,154,141	-				-1.2
1,154,141	-				-1.6
1,154,141	-				+1.0
1,154,141	-				-1.4
1,154,417	+		ABIE53_004936	0.17	-1.7
1,154,418	-		ABIE53_004936	0.17	-2.7
1,154,418	-		ABIE53_004936	0.17	-0.4