Experiment: Acetylated xylan 10 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004715 and ABIE53_004716 are separated by 65 nucleotides ABIE53_004716 and ABIE53_004717 are separated by 558 nucleotides
ABIE53_004715: ABIE53_004715 - succinate-semialdehyde dehydrogenase/glutarate-semialdehyde dehydrogenase, at 906,287 to 907,726
_004715
ABIE53_004716: ABIE53_004716 - putative MFS transporter, at 907,792 to 909,174
_004716
ABIE53_004717: ABIE53_004717 - peptide chain release factor 3, at 909,733 to 911,334
_004717
Position (kb) 907
908
909
910 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 907.010 kb on - strand, within ABIE53_004715 at 907.154 kb on + strand, within ABIE53_004715 at 907.154 kb on + strand, within ABIE53_004715 at 907.154 kb on + strand, within ABIE53_004715 at 907.155 kb on - strand, within ABIE53_004715 at 907.155 kb on - strand, within ABIE53_004715 at 907.155 kb on - strand, within ABIE53_004715 at 907.155 kb on - strand, within ABIE53_004715 at 907.155 kb on - strand, within ABIE53_004715 at 907.155 kb on - strand, within ABIE53_004715 at 907.155 kb on - strand, within ABIE53_004715 at 907.155 kb on - strand, within ABIE53_004715 at 907.172 kb on + strand, within ABIE53_004715 at 907.172 kb on + strand, within ABIE53_004715 at 907.172 kb on + strand, within ABIE53_004715 at 907.172 kb on + strand, within ABIE53_004715 at 907.173 kb on - strand, within ABIE53_004715 at 907.173 kb on - strand, within ABIE53_004715 at 907.370 kb on + strand, within ABIE53_004715 at 907.518 kb on - strand, within ABIE53_004715 at 907.523 kb on + strand, within ABIE53_004715 at 907.523 kb on + strand, within ABIE53_004715 at 907.524 kb on - strand, within ABIE53_004715 at 907.667 kb on + strand at 907.682 kb on + strand at 907.683 kb on - strand at 907.697 kb on + strand at 907.698 kb on - strand at 907.698 kb on - strand at 907.698 kb on - strand at 907.732 kb on - strand at 907.732 kb on - strand at 907.797 kb on + strand at 908.164 kb on + strand, within ABIE53_004716 at 908.165 kb on - strand, within ABIE53_004716 at 908.310 kb on - strand, within ABIE53_004716 at 908.323 kb on + strand, within ABIE53_004716 at 908.323 kb on + strand, within ABIE53_004716 at 908.354 kb on - strand, within ABIE53_004716 at 908.662 kb on + strand, within ABIE53_004716 at 908.662 kb on + strand, within ABIE53_004716 at 908.663 kb on - strand, within ABIE53_004716 at 908.663 kb on - strand, within ABIE53_004716 at 909.024 kb on + strand, within ABIE53_004716 at 909.024 kb on + strand, within ABIE53_004716 at 909.024 kb on + strand, within ABIE53_004716 at 909.179 kb on + strand at 909.394 kb on + strand at 909.437 kb on + strand at 909.437 kb on + strand at 909.437 kb on + strand at 909.437 kb on + strand at 909.437 kb on + strand at 909.437 kb on + strand at 909.437 kb on + strand at 909.438 kb on - strand at 909.438 kb on - strand at 909.438 kb on - strand at 909.438 kb on - strand at 909.438 kb on - strand at 909.438 kb on - strand at 909.521 kb on + strand at 909.521 kb on + strand at 909.522 kb on - strand at 909.557 kb on + strand at 909.558 kb on - strand at 909.563 kb on + strand at 909.563 kb on + strand at 909.563 kb on + strand at 909.563 kb on + strand at 909.614 kb on + strand at 909.614 kb on + strand at 909.614 kb on + strand at 909.615 kb on - strand at 909.775 kb on - strand at 909.775 kb on - strand at 909.955 kb on + strand, within ABIE53_004717 at 910.018 kb on + strand, within ABIE53_004717 at 910.018 kb on + strand, within ABIE53_004717 at 910.019 kb on - strand, within ABIE53_004717 at 910.019 kb on - strand, within ABIE53_004717 at 910.019 kb on - strand, within ABIE53_004717 at 910.019 kb on - strand, within ABIE53_004717
Per-strain Table
Position Strand Gene LocusTag Fraction Acetylated xylan 10 g/L (C) remove 907,010 - ABIE53_004715 0.50 -2.5 907,154 + ABIE53_004715 0.60 -1.8 907,154 + ABIE53_004715 0.60 -1.4 907,154 + ABIE53_004715 0.60 -0.6 907,155 - ABIE53_004715 0.60 -2.7 907,155 - ABIE53_004715 0.60 -1.4 907,155 - ABIE53_004715 0.60 +1.8 907,155 - ABIE53_004715 0.60 +0.8 907,155 - ABIE53_004715 0.60 +0.8 907,155 - ABIE53_004715 0.60 +1.8 907,155 - ABIE53_004715 0.60 -0.8 907,155 - ABIE53_004715 0.60 -0.2 907,172 + ABIE53_004715 0.61 +0.0 907,172 + ABIE53_004715 0.61 -1.5 907,172 + ABIE53_004715 0.61 -1.3 907,172 + ABIE53_004715 0.61 +2.8 907,173 - ABIE53_004715 0.62 -0.2 907,173 - ABIE53_004715 0.62 -0.2 907,370 + ABIE53_004715 0.75 -0.2 907,518 - ABIE53_004715 0.85 -2.7 907,523 + ABIE53_004715 0.86 -1.5 907,523 + ABIE53_004715 0.86 +0.8 907,524 - ABIE53_004715 0.86 -3.1 907,667 + -0.5 907,682 + -0.8 907,683 - -0.2 907,697 + -1.3 907,698 - -1.5 907,698 - -2.4 907,698 - -2.2 907,732 - -0.8 907,732 - -2.6 907,797 + -0.4 908,164 + ABIE53_004716 0.27 +2.2 908,165 - ABIE53_004716 0.27 -2.0 908,310 - ABIE53_004716 0.37 -0.5 908,323 + ABIE53_004716 0.38 -0.1 908,323 + ABIE53_004716 0.38 -3.2 908,354 - ABIE53_004716 0.41 -0.5 908,662 + ABIE53_004716 0.63 +0.8 908,662 + ABIE53_004716 0.63 -0.2 908,663 - ABIE53_004716 0.63 +0.1 908,663 - ABIE53_004716 0.63 +0.3 909,024 + ABIE53_004716 0.89 +0.1 909,024 + ABIE53_004716 0.89 -0.4 909,024 + ABIE53_004716 0.89 -0.2 909,179 + -0.2 909,394 + -1.2 909,437 + -2.3 909,437 + -0.0 909,437 + +0.2 909,437 + +0.8 909,437 + -2.2 909,437 + -0.6 909,437 + -2.4 909,438 - -0.2 909,438 - -1.2 909,438 - -0.4 909,438 - -2.0 909,438 - -1.9 909,438 - -1.4 909,521 + -3.2 909,521 + -2.4 909,522 - +0.8 909,557 + -0.7 909,558 - -0.2 909,563 + -0.2 909,563 + -0.2 909,563 + -1.7 909,563 + +0.4 909,614 + -1.5 909,614 + -0.2 909,614 + -0.7 909,615 - +0.5 909,775 - -2.1 909,775 - -2.4 909,955 + ABIE53_004717 0.14 -0.4 910,018 + ABIE53_004717 0.18 +0.7 910,018 + ABIE53_004717 0.18 -1.5 910,019 - ABIE53_004717 0.18 -0.5 910,019 - ABIE53_004717 0.18 +0.8 910,019 - ABIE53_004717 0.18 -0.2 910,019 - ABIE53_004717 0.18 +0.8
Or see this region's nucleotide sequence