Experiment: Acetylated xylan 10 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004100 and ABIE53_004101 are separated by 223 nucleotides ABIE53_004101 and ABIE53_004102 overlap by 8 nucleotides
ABIE53_004100: ABIE53_004100 - alkylation response protein AidB-like acyl-CoA dehydrogenase, at 264,058 to 265,260
_004100
ABIE53_004101: ABIE53_004101 - D-methionine transport system permease protein, at 265,484 to 266,140
_004101
ABIE53_004102: ABIE53_004102 - D-methionine transport system ATP-binding protein, at 266,133 to 267,293
_004102
Position (kb) 265
266
267 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 264.485 kb on + strand, within ABIE53_004100 at 264.485 kb on + strand, within ABIE53_004100 at 264.485 kb on + strand, within ABIE53_004100 at 264.485 kb on + strand, within ABIE53_004100 at 264.485 kb on + strand, within ABIE53_004100 at 264.485 kb on + strand, within ABIE53_004100 at 264.485 kb on + strand, within ABIE53_004100 at 264.485 kb on + strand, within ABIE53_004100 at 264.485 kb on + strand, within ABIE53_004100 at 264.485 kb on + strand, within ABIE53_004100 at 264.486 kb on - strand, within ABIE53_004100 at 264.486 kb on - strand, within ABIE53_004100 at 264.486 kb on - strand, within ABIE53_004100 at 264.486 kb on - strand, within ABIE53_004100 at 264.486 kb on - strand, within ABIE53_004100 at 264.486 kb on - strand, within ABIE53_004100 at 264.486 kb on - strand, within ABIE53_004100 at 264.914 kb on + strand, within ABIE53_004100 at 264.948 kb on + strand, within ABIE53_004100 at 264.948 kb on + strand, within ABIE53_004100 at 264.948 kb on + strand, within ABIE53_004100 at 264.949 kb on - strand, within ABIE53_004100 at 265.031 kb on + strand, within ABIE53_004100 at 265.031 kb on + strand, within ABIE53_004100 at 265.031 kb on + strand, within ABIE53_004100 at 265.031 kb on + strand, within ABIE53_004100 at 265.032 kb on - strand, within ABIE53_004100 at 265.032 kb on - strand, within ABIE53_004100 at 265.032 kb on - strand, within ABIE53_004100 at 265.032 kb on - strand, within ABIE53_004100 at 265.032 kb on - strand, within ABIE53_004100 at 265.032 kb on - strand, within ABIE53_004100 at 265.032 kb on - strand, within ABIE53_004100 at 265.032 kb on - strand, within ABIE53_004100 at 265.035 kb on + strand, within ABIE53_004100 at 265.036 kb on - strand, within ABIE53_004100 at 265.362 kb on + strand at 265.362 kb on + strand at 265.420 kb on - strand at 265.420 kb on - strand at 265.420 kb on - strand at 265.450 kb on + strand at 265.451 kb on - strand at 265.586 kb on - strand, within ABIE53_004101 at 265.599 kb on + strand, within ABIE53_004101 at 265.600 kb on - strand, within ABIE53_004101 at 265.744 kb on + strand, within ABIE53_004101 at 265.744 kb on + strand, within ABIE53_004101 at 265.744 kb on + strand, within ABIE53_004101 at 265.744 kb on + strand, within ABIE53_004101 at 265.744 kb on + strand, within ABIE53_004101 at 265.744 kb on + strand, within ABIE53_004101 at 265.744 kb on + strand, within ABIE53_004101 at 265.745 kb on - strand, within ABIE53_004101 at 265.745 kb on - strand, within ABIE53_004101 at 265.745 kb on - strand, within ABIE53_004101 at 265.745 kb on - strand, within ABIE53_004101 at 265.785 kb on - strand, within ABIE53_004101 at 265.852 kb on + strand, within ABIE53_004101 at 265.852 kb on + strand, within ABIE53_004101 at 265.852 kb on + strand, within ABIE53_004101 at 265.852 kb on + strand, within ABIE53_004101 at 265.852 kb on + strand, within ABIE53_004101 at 265.898 kb on + strand, within ABIE53_004101 at 265.899 kb on - strand, within ABIE53_004101 at 265.899 kb on - strand, within ABIE53_004101 at 265.899 kb on - strand, within ABIE53_004101 at 266.096 kb on - strand at 266.140 kb on + strand at 266.140 kb on + strand at 266.141 kb on - strand at 266.141 kb on - strand at 266.613 kb on + strand, within ABIE53_004102 at 266.613 kb on + strand, within ABIE53_004102 at 266.613 kb on + strand, within ABIE53_004102 at 266.614 kb on - strand, within ABIE53_004102 at 267.000 kb on + strand, within ABIE53_004102 at 267.000 kb on + strand, within ABIE53_004102 at 267.000 kb on + strand, within ABIE53_004102 at 267.000 kb on + strand, within ABIE53_004102 at 267.001 kb on - strand, within ABIE53_004102 at 267.001 kb on - strand, within ABIE53_004102 at 267.001 kb on - strand, within ABIE53_004102 at 267.001 kb on - strand, within ABIE53_004102
Per-strain Table
Position Strand Gene LocusTag Fraction Acetylated xylan 10 g/L (C) remove 264,485 + ABIE53_004100 0.35 +1.0 264,485 + ABIE53_004100 0.35 +3.4 264,485 + ABIE53_004100 0.35 +1.0 264,485 + ABIE53_004100 0.35 +1.3 264,485 + ABIE53_004100 0.35 -2.0 264,485 + ABIE53_004100 0.35 -2.7 264,485 + ABIE53_004100 0.35 +0.0 264,485 + ABIE53_004100 0.35 -0.5 264,485 + ABIE53_004100 0.35 -2.3 264,485 + ABIE53_004100 0.35 -0.3 264,486 - ABIE53_004100 0.36 +1.0 264,486 - ABIE53_004100 0.36 +0.3 264,486 - ABIE53_004100 0.36 -1.3 264,486 - ABIE53_004100 0.36 +1.6 264,486 - ABIE53_004100 0.36 -0.3 264,486 - ABIE53_004100 0.36 +2.0 264,486 - ABIE53_004100 0.36 -1.0 264,914 + ABIE53_004100 0.71 -1.3 264,948 + ABIE53_004100 0.74 -0.5 264,948 + ABIE53_004100 0.74 -1.8 264,948 + ABIE53_004100 0.74 -0.5 264,949 - ABIE53_004100 0.74 +1.6 265,031 + ABIE53_004100 0.81 -1.7 265,031 + ABIE53_004100 0.81 +1.0 265,031 + ABIE53_004100 0.81 +0.0 265,031 + ABIE53_004100 0.81 -1.1 265,032 - ABIE53_004100 0.81 +1.0 265,032 - ABIE53_004100 0.81 +1.0 265,032 - ABIE53_004100 0.81 +0.0 265,032 - ABIE53_004100 0.81 -1.0 265,032 - ABIE53_004100 0.81 +1.0 265,032 - ABIE53_004100 0.81 +1.0 265,032 - ABIE53_004100 0.81 +1.0 265,032 - ABIE53_004100 0.81 -1.0 265,035 + ABIE53_004100 0.81 +1.8 265,036 - ABIE53_004100 0.81 -1.4 265,362 + +1.0 265,362 + -1.3 265,420 - -0.8 265,420 - +0.0 265,420 - -2.3 265,450 + -1.0 265,451 - +0.0 265,586 - ABIE53_004101 0.16 -0.5 265,599 + ABIE53_004101 0.18 -2.4 265,600 - ABIE53_004101 0.18 -2.4 265,744 + ABIE53_004101 0.40 -1.0 265,744 + ABIE53_004101 0.40 -0.3 265,744 + ABIE53_004101 0.40 +1.0 265,744 + ABIE53_004101 0.40 +2.6 265,744 + ABIE53_004101 0.40 +1.0 265,744 + ABIE53_004101 0.40 +1.0 265,744 + ABIE53_004101 0.40 -0.7 265,745 - ABIE53_004101 0.40 +0.4 265,745 - ABIE53_004101 0.40 +0.6 265,745 - ABIE53_004101 0.40 -1.5 265,745 - ABIE53_004101 0.40 -1.0 265,785 - ABIE53_004101 0.46 +1.0 265,852 + ABIE53_004101 0.56 -0.1 265,852 + ABIE53_004101 0.56 +1.0 265,852 + ABIE53_004101 0.56 +1.0 265,852 + ABIE53_004101 0.56 -0.2 265,852 + ABIE53_004101 0.56 +0.9 265,898 + ABIE53_004101 0.63 +1.0 265,899 - ABIE53_004101 0.63 +0.0 265,899 - ABIE53_004101 0.63 +0.0 265,899 - ABIE53_004101 0.63 -1.8 266,096 - +0.6 266,140 + +0.8 266,140 + +1.0 266,141 - -1.8 266,141 - -0.5 266,613 + ABIE53_004102 0.41 +1.4 266,613 + ABIE53_004102 0.41 +1.0 266,613 + ABIE53_004102 0.41 -1.7 266,614 - ABIE53_004102 0.41 +2.0 267,000 + ABIE53_004102 0.75 +0.3 267,000 + ABIE53_004102 0.75 -1.3 267,000 + ABIE53_004102 0.75 +1.0 267,000 + ABIE53_004102 0.75 -0.2 267,001 - ABIE53_004102 0.75 +1.0 267,001 - ABIE53_004102 0.75 +0.5 267,001 - ABIE53_004102 0.75 +0.4 267,001 - ABIE53_004102 0.75 +1.3
Or see this region's nucleotide sequence