Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003700

Experiment: Acetylated xylan 10 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetylated xylan 10 g/L (C)
4,151,561	-		ABIE53_003698	0.79	-0.3
4,151,561	-		ABIE53_003698	0.79	+2.0
4,151,561	-		ABIE53_003698	0.79	+2.1
4,151,561	-		ABIE53_003698	0.79	+2.3
4,151,669	-				-1.0
4,151,669	-				-0.8
4,151,684	-				-0.3
4,151,684	-				-0.7
4,151,734	-				-1.3
4,151,734	-				-0.5
4,151,734	-				-0.2
4,151,734	-				-0.8
4,151,734	-				+1.5
4,151,734	-				+1.4
4,151,734	-				-1.4
4,151,734	-				-1.7
4,151,734	-				-2.5
4,151,743	-				-1.3
4,152,350	-				+0.2
4,152,350	-				-0.5
4,152,360	-				+0.6
4,152,360	-				+0.0
4,152,360	-				-1.2
4,152,360	-				+1.4
4,152,363	-				-0.8
4,152,363	-				-0.2
4,152,363	-				-1.8
4,152,363	-				-1.2
4,152,363	-				-2.0
4,152,363	-				-0.3
4,152,363	-				-1.0
4,152,363	-				-0.2
4,152,363	-				+0.2
4,152,363	-				-1.7
4,152,363	-				-1.5
4,152,363	-				-0.2
4,152,363	-				-2.5
4,152,363	-				-0.7
4,152,363	-				-0.8
4,152,363	-				+0.8
4,152,363	-				-0.8
4,152,363	-				+0.8
4,152,363	-				+2.0
4,152,363	-				-2.3
4,152,363	-				-1.8
4,152,363	-				-0.2
4,152,363	-				+0.5
4,152,363	-				-0.8
4,152,394	-				-0.6
4,152,394	-				-0.1
4,152,394	-				-1.4
4,152,424	-				+2.1
4,152,424	-				-1.9
4,152,424	-				+0.8
4,152,424	-				+0.5
4,152,424	-				-1.7
4,152,513	-				-0.2
4,152,513	-				-2.0
4,152,513	-				-1.2
4,152,656	+		ABIE53_003700	0.23	-1.1
4,152,657	-		ABIE53_003700	0.23	-1.6
4,152,657	-		ABIE53_003700	0.23	-1.1
4,152,751	+		ABIE53_003700	0.31	-2.0
4,152,751	+		ABIE53_003700	0.31	-0.6
4,152,751	+		ABIE53_003700	0.31	-0.7
4,152,751	+		ABIE53_003700	0.31	-1.0
4,152,751	+		ABIE53_003700	0.31	-0.6
4,152,752	-		ABIE53_003700	0.32	-1.3
4,152,752	-		ABIE53_003700	0.32	+0.2
4,152,752	-		ABIE53_003700	0.32	+0.8
4,152,752	-		ABIE53_003700	0.32	-0.3
4,152,752	-		ABIE53_003700	0.32	+0.5
4,152,805	+		ABIE53_003700	0.37	-1.2
4,152,805	+		ABIE53_003700	0.37	-0.2
4,152,913	+		ABIE53_003700	0.47	-3.2
4,152,913	+		ABIE53_003700	0.47	-0.2
4,152,913	+		ABIE53_003700	0.47	-0.2
4,152,914	-		ABIE53_003700	0.47	-1.9
4,152,914	-		ABIE53_003700	0.47	+0.5
4,152,914	-		ABIE53_003700	0.47	+0.8
4,152,914	-		ABIE53_003700	0.47	+0.5
4,152,928	-		ABIE53_003700	0.48	+0.1
4,153,018	+		ABIE53_003700	0.56	-0.2
4,153,018	+		ABIE53_003700	0.56	-1.5
4,153,018	+		ABIE53_003700	0.56	+0.0
4,153,018	+		ABIE53_003700	0.56	+0.8
4,153,018	+		ABIE53_003700	0.56	+0.8
4,153,018	+		ABIE53_003700	0.56	-2.3
4,153,018	+		ABIE53_003700	0.56	-2.0
4,153,018	+		ABIE53_003700	0.56	+1.2
4,153,018	+		ABIE53_003700	0.56	-0.8
4,153,018	+		ABIE53_003700	0.56	-0.0
4,153,019	-		ABIE53_003700	0.56	-0.7
4,153,019	-		ABIE53_003700	0.56	-0.8
4,153,019	-		ABIE53_003700	0.56	-0.6
4,153,019	-		ABIE53_003700	0.56	+0.1
4,153,019	-		ABIE53_003700	0.56	-0.1
4,153,019	-		ABIE53_003700	0.56	-1.8
4,153,019	-		ABIE53_003700	0.56	-1.4
4,153,019	-		ABIE53_003700	0.56	-0.2
4,153,019	-		ABIE53_003700	0.56	-2.5
4,153,019	-		ABIE53_003700	0.56	-0.1
4,153,138	+		ABIE53_003700	0.68	+0.3
4,153,138	+		ABIE53_003700	0.68	+0.1
4,153,138	+		ABIE53_003700	0.68	-1.0
4,153,138	+		ABIE53_003700	0.68	+0.8
4,153,138	+		ABIE53_003700	0.68	-0.5
4,153,138	+		ABIE53_003700	0.68	-1.8
4,153,138	+		ABIE53_003700	0.68	+0.8
4,153,138	+		ABIE53_003700	0.68	+0.8
4,153,138	+		ABIE53_003700	0.68	-2.1
4,153,138	+		ABIE53_003700	0.68	-0.9
4,153,138	+		ABIE53_003700	0.68	+1.8
4,153,138	+		ABIE53_003700	0.68	-1.0
4,153,138	+		ABIE53_003700	0.68	+0.8
4,153,138	+		ABIE53_003700	0.68	-0.7
4,153,138	+		ABIE53_003700	0.68	+0.8
4,153,138	+		ABIE53_003700	0.68	+0.8
4,153,139	-		ABIE53_003700	0.68	-2.0
4,153,139	-		ABIE53_003700	0.68	-2.2
4,153,139	-		ABIE53_003700	0.68	+0.8
4,153,139	-		ABIE53_003700	0.68	-3.4
4,153,139	-		ABIE53_003700	0.68	-1.7
4,153,139	-		ABIE53_003700	0.68	-0.6
4,153,409	-				-3.7
4,153,409	-				-1.2
4,153,409	-				-1.2
4,153,409	-				+2.4
4,153,432	+				+1.5
4,153,433	-				+0.5
4,153,433	-				+0.5
4,153,484	+				+0.8
4,153,484	+				+0.1
4,153,484	+				-1.1
4,153,484	+				-1.4
4,153,484	+				-2.0
4,153,485	-				+0.4
4,153,485	-				-0.9
4,153,485	-				-1.6
4,153,485	-				-0.2
4,153,485	-				-0.7
4,153,485	-				-0.6
4,153,610	+				-2.9
4,153,610	+				-1.3
4,153,610	+				+0.0
4,153,610	+				+0.1
4,153,610	+				-0.8
4,153,610	+				+1.8
4,153,610	+				-1.0
4,153,611	-				-1.2
4,153,611	-				+1.2
4,153,611	-				-0.4
4,153,611	-				-1.2
4,153,611	-				+0.0
4,153,611	-				-0.3
4,153,637	+				-3.0
4,153,637	+				+0.4
4,153,638	-				+0.5
4,153,638	-				-0.3