Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002967

Experiment: Acetylated xylan 10 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetylated xylan 10 g/L (C)
3,358,836	+		ABIE53_002966	0.77	+1.6
3,358,836	+		ABIE53_002966	0.77	-2.6
3,358,836	+		ABIE53_002966	0.77	+1.0
3,358,836	+		ABIE53_002966	0.77	+0.2
3,358,836	+		ABIE53_002966	0.77	-2.0
3,358,836	+		ABIE53_002966	0.77	-1.7
3,358,836	+		ABIE53_002966	0.77	+1.0
3,358,836	+		ABIE53_002966	0.77	-0.8
3,358,836	+		ABIE53_002966	0.77	+0.8
3,358,836	+		ABIE53_002966	0.77	-2.2
3,358,836	+		ABIE53_002966	0.77	-0.6
3,358,836	+		ABIE53_002966	0.77	-1.9
3,358,836	+		ABIE53_002966	0.77	+1.0
3,358,837	-		ABIE53_002966	0.77	-0.7
3,358,837	-		ABIE53_002966	0.77	-0.3
3,358,837	-		ABIE53_002966	0.77	+3.0
3,358,837	-		ABIE53_002966	0.77	+0.8
3,358,837	-		ABIE53_002966	0.77	-2.3
3,358,837	-		ABIE53_002966	0.77	-0.6
3,358,837	-		ABIE53_002966	0.77	-1.8
3,358,837	-		ABIE53_002966	0.77	-1.0
3,358,837	-		ABIE53_002966	0.77	+1.6
3,358,837	-		ABIE53_002966	0.77	+0.6
3,358,837	-		ABIE53_002966	0.77	-0.6
3,358,837	-		ABIE53_002966	0.77	-0.7
3,358,837	-		ABIE53_002966	0.77	-1.0
3,358,887	+		ABIE53_002966	0.80	+0.0
3,358,888	-		ABIE53_002966	0.80	-0.3
3,358,888	-		ABIE53_002966	0.80	+1.0
3,358,888	-		ABIE53_002966	0.80	+1.6
3,358,888	-		ABIE53_002966	0.80	+1.0
3,358,915	+		ABIE53_002966	0.82	+0.0
3,358,916	-		ABIE53_002966	0.82	+3.3
3,358,916	-		ABIE53_002966	0.82	-3.2
3,358,916	-		ABIE53_002966	0.82	-1.3
3,358,916	-		ABIE53_002966	0.82	-1.6
3,358,916	-		ABIE53_002966	0.82	+1.0
3,358,980	-		ABIE53_002966	0.85	-1.1
3,358,980	-		ABIE53_002966	0.85	+1.0
3,359,072	+				-1.8
3,359,123	+				+1.0
3,359,123	+				+1.0
3,359,165	+				-1.8
3,359,422	+				-1.2
3,359,423	-				+0.0
3,359,423	-				-2.5
3,359,663	+				+1.0
3,359,663	+				-0.1
3,359,663	+				-3.4
3,359,745	+				-0.6
3,359,745	+				+0.0
3,359,745	+				+0.5
3,361,491	+				-1.8
3,361,491	+				-0.8
3,361,491	+				+0.4
3,361,491	+				-0.8
3,361,491	+				+0.0
3,361,491	+				+1.0
3,361,519	-				-1.9
3,361,624	+				+2.4
3,361,625	-				+0.0
3,361,705	+		ABIE53_002968	0.16	+0.3
3,361,705	+		ABIE53_002968	0.16	-3.3
3,361,705	+		ABIE53_002968	0.16	-0.6
3,361,705	+		ABIE53_002968	0.16	+0.0
3,361,705	+		ABIE53_002968	0.16	-0.1
3,361,705	+		ABIE53_002968	0.16	-1.0
3,361,705	+		ABIE53_002968	0.16	-0.1
3,361,705	+		ABIE53_002968	0.16	+0.0
3,361,706	-		ABIE53_002968	0.16	+1.0
3,361,706	-		ABIE53_002968	0.16	-1.1
3,361,706	-		ABIE53_002968	0.16	-0.0
3,361,706	-		ABIE53_002968	0.16	+0.3
3,361,706	-		ABIE53_002968	0.16	+3.0
3,361,706	-		ABIE53_002968	0.16	-2.3
3,361,706	-		ABIE53_002968	0.16	-2.0
3,361,706	-		ABIE53_002968	0.16	-2.1
3,361,739	-		ABIE53_002968	0.23	+0.5
3,361,870	+		ABIE53_002968	0.52	-1.3
3,361,871	-		ABIE53_002968	0.52	+1.0
3,362,383	-		ABIE53_002969	0.59	-0.7
3,362,426	+		ABIE53_002969	0.70	-1.3
3,362,426	+		ABIE53_002969	0.70	-3.3
3,362,426	+		ABIE53_002969	0.70	-3.5
3,362,427	-		ABIE53_002969	0.71	-1.0
3,362,427	-		ABIE53_002969	0.71	+0.0
3,362,427	-		ABIE53_002969	0.71	-0.2
3,362,427	-		ABIE53_002969	0.71	+1.6
3,362,427	-		ABIE53_002969	0.71	-1.4
3,362,427	-		ABIE53_002969	0.71	-2.8
3,362,427	-		ABIE53_002969	0.71	-1.6
3,362,427	-		ABIE53_002969	0.71	+0.0
3,362,427	-		ABIE53_002969	0.71	-1.0
3,362,427	-		ABIE53_002969	0.71	+1.0