Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002857

Experiment: Acetylated xylan 10 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetylated xylan 10 g/L (C)
3,225,311	+				-1.0
3,225,311	+				-0.9
3,225,311	+				-1.6
3,225,311	+				-2.0
3,225,311	+				-0.8
3,225,311	+				+1.5
3,225,311	+				+1.0
3,225,311	+				-1.8
3,225,311	+				-1.0
3,225,311	+				-0.2
3,225,312	-				-2.2
3,225,319	+				-0.0
3,225,319	+				-0.0
3,225,383	+				+1.0
3,225,383	+				-2.0
3,225,383	+				-0.5
3,225,383	+				-1.3
3,225,384	-				-2.7
3,225,471	+				+1.0
3,225,471	+				-0.5
3,225,471	+				+2.3
3,225,471	+				-0.5
3,225,472	-				+0.2
3,225,472	-				+3.1
3,225,472	-				-1.2
3,225,472	-				-0.9
3,225,738	+		ABIE53_002856	0.85	-3.4
3,225,739	-		ABIE53_002856	0.86	-1.0
3,225,739	-		ABIE53_002856	0.86	-1.0
3,225,739	-		ABIE53_002856	0.86	-2.9
3,225,803	+				-1.7
3,225,804	-				+0.4
3,225,804	-				-1.0
3,225,804	-				-0.6
3,225,847	+				+1.7
3,225,848	-				-1.5
3,225,848	-				+1.0
3,225,855	+				-2.0
3,225,855	+				+2.0
3,225,855	+				-4.0
3,225,855	+				+1.0
3,225,855	+				-1.1
3,225,855	+				-2.2
3,225,855	+				+1.0
3,225,855	+				+1.0
3,225,856	-				-1.6
3,225,856	-				+1.0
3,225,856	-				+2.0
3,225,856	-				+1.2
3,225,856	-				+0.8
3,225,856	-				+1.0
3,225,856	-				+0.2
3,225,856	-				+1.0
3,225,937	+				+1.0
3,225,937	+				-1.0
3,225,937	+				+1.0
3,225,937	+				-1.4
3,225,938	-				+1.0
3,225,938	-				+2.0
3,225,985	+				-0.0
3,225,986	-				-2.8
3,225,986	-				-0.6
3,226,000	+				-2.6
3,226,058	+				-0.2
3,226,058	+				+3.3
3,226,058	+				-0.4
3,226,059	-				-0.0
3,226,080	+				-0.2
3,226,080	+				+0.4
3,226,101	+				-0.2
3,226,101	+				+3.8
3,226,101	+				-1.3
3,226,123	+				+0.6
3,226,123	+				-0.0
3,226,124	-				-1.0
3,226,149	+				-1.6
3,226,150	-				-1.8
3,226,150	-				-0.0
3,226,217	+				+1.0
3,226,217	+				-0.5
3,226,217	+				-2.7
3,226,217	+				-2.0
3,226,217	+				-0.1
3,226,217	+				-1.8
3,226,217	+				+4.4
3,226,218	-				-3.7
3,226,218	-				+1.0
3,226,218	-				+1.0
3,226,330	+				-4.0
3,226,330	+				+1.0
3,226,331	-				-3.4
3,226,429	+				-0.6
3,226,429	+				-3.2
3,226,429	+				-0.3
3,226,429	+				-2.7
3,226,430	-				+2.0
3,226,430	-				-2.4
3,226,435	+				-3.6
3,226,436	-				-1.8
3,226,436	-				-2.8
3,226,436	-				-0.8
3,226,436	-				-1.4
3,226,440	+		ABIE53_002857	0.10	-0.6
3,226,440	+		ABIE53_002857	0.10	-3.7
3,226,440	+		ABIE53_002857	0.10	-2.5
3,226,441	-		ABIE53_002857	0.10	-1.4
3,226,441	-		ABIE53_002857	0.10	-1.6
3,226,441	-		ABIE53_002857	0.10	-1.6
3,226,672	+		ABIE53_002857	0.22	-4.1
3,226,672	+		ABIE53_002857	0.22	-3.9
3,226,672	+		ABIE53_002857	0.22	-1.0
3,226,681	-		ABIE53_002857	0.23	-2.5
3,226,708	+		ABIE53_002857	0.24	-6.0
3,226,709	-		ABIE53_002857	0.24	-2.2
3,226,709	-		ABIE53_002857	0.24	-1.8
3,226,709	-		ABIE53_002857	0.24	-2.3
3,226,962	+		ABIE53_002857	0.37	-3.0
3,226,962	+		ABIE53_002857	0.37	-3.8
3,226,962	+		ABIE53_002857	0.37	-4.0
3,226,963	-		ABIE53_002857	0.37	-1.8
3,227,161	+		ABIE53_002857	0.47	-1.2
3,227,161	+		ABIE53_002857	0.47	-1.0
3,227,161	+		ABIE53_002857	0.47	+1.0
3,227,161	+		ABIE53_002857	0.47	-0.6
3,227,162	-		ABIE53_002857	0.47	-2.7
3,227,162	-		ABIE53_002857	0.47	+1.0
3,227,162	-		ABIE53_002857	0.47	-1.0
3,227,257	+		ABIE53_002857	0.52	-0.6
3,227,257	+		ABIE53_002857	0.52	-5.5
3,227,257	+		ABIE53_002857	0.52	-3.4
3,227,258	-		ABIE53_002857	0.52	+1.0
3,227,258	-		ABIE53_002857	0.52	-2.8
3,227,258	-		ABIE53_002857	0.52	+1.0
3,227,258	-		ABIE53_002857	0.52	+1.0
3,227,290	+		ABIE53_002857	0.54	-0.4
3,227,290	+		ABIE53_002857	0.54	-1.8
3,227,291	-		ABIE53_002857	0.54	-2.9
3,227,291	-		ABIE53_002857	0.54	-1.6
3,227,389	+		ABIE53_002857	0.59	-1.8
3,227,429	-		ABIE53_002857	0.61	-0.6
3,227,429	-		ABIE53_002857	0.61	-0.0
3,227,429	-		ABIE53_002857	0.61	-1.4
3,227,650	+		ABIE53_002857	0.73	-0.0
3,227,650	+		ABIE53_002857	0.73	-0.0
3,227,700	+		ABIE53_002857	0.75	-0.0
3,227,700	+		ABIE53_002857	0.75	-0.0
3,227,701	-		ABIE53_002857	0.75	-0.6
3,227,701	-		ABIE53_002857	0.75	-3.0
3,227,701	-		ABIE53_002857	0.75	-0.6
3,227,701	-		ABIE53_002857	0.75	+1.0
3,227,701	-		ABIE53_002857	0.75	-1.8
3,227,701	-		ABIE53_002857	0.75	-4.6
3,227,701	-		ABIE53_002857	0.75	-2.5
3,227,701	-		ABIE53_002857	0.75	-1.8
3,227,755	+		ABIE53_002857	0.78	-3.1
3,227,755	+		ABIE53_002857	0.78	-1.6
3,227,756	-		ABIE53_002857	0.78	-0.0
3,227,821	+		ABIE53_002857	0.82	-3.5
3,227,821	+		ABIE53_002857	0.82	-4.1
3,227,822	-		ABIE53_002857	0.82	-0.0
3,227,822	-		ABIE53_002857	0.82	-0.0
3,227,822	-		ABIE53_002857	0.82	-2.4
3,228,163	+				+0.5
3,228,163	+				-2.2
3,228,164	-				-2.2
3,228,164	-				-1.5
3,228,278	+				-0.6
3,228,278	+				+0.8
3,228,278	+				-1.9
3,228,278	+				-2.3
3,228,279	-				-0.6
3,228,279	-				+2.6
3,228,279	-				+1.0
3,228,279	-				-1.4
3,228,279	-				+1.0
3,228,279	-				+1.0
3,228,279	-				-0.0
3,228,279	-				-1.4
3,228,322	-				-1.0
3,228,351	+				-2.6
3,228,351	+				-1.0
3,228,351	+				+3.7
3,228,351	+				-1.2
3,228,351	+				-1.0
3,228,351	+				+3.3
3,228,351	+				-2.7
3,228,398	+				+1.0
3,228,419	+				-1.8
3,228,419	+				+0.3
3,228,419	+				-2.6
3,228,419	+				+1.0
3,228,419	+				-0.0
3,228,453	+				-0.0
3,228,453	+				-1.0
3,228,453	+				-0.6
3,228,453	+				+1.0
3,228,454	-				+1.0
3,228,454	-				+0.2
3,228,454	-				-0.6
3,228,454	-				+1.0
3,228,454	-				-1.0
3,228,458	+				+1.0
3,228,458	+				+1.2
3,228,458	+				-0.6
3,228,458	+				-1.4
3,228,459	-				-1.1
3,228,459	-				-1.1
3,228,459	-				+1.0
3,228,459	-				-1.6
3,228,459	-				-0.0
3,228,459	-				-2.5
3,228,459	-				-0.6
3,228,514	+				+2.0
3,228,514	+				-3.4
3,228,650	+				-1.6
3,228,650	+				-1.4
3,228,650	+				+1.0
3,228,650	+				-0.0
3,228,650	+				-1.9
3,228,650	+				+0.5
3,228,650	+				-2.1
3,228,651	-				-0.0
3,228,651	-				+0.8
3,228,651	-				-0.9
3,228,651	-				-1.1
3,228,661	+				+1.0
3,228,661	+				+1.0
3,228,661	+				-1.4
3,228,662	-				+1.0
3,228,662	-				-4.8
3,228,662	-				-0.0
3,228,715	+				-0.6
3,228,715	+				-2.4
3,228,716	-				-0.0
3,228,716	-				+1.0
3,228,784	+				+1.0
3,228,785	-				-1.6
3,228,792	+				+1.0
3,228,827	+				+2.0
3,228,828	-				+2.0
3,228,828	-				+1.6
3,228,845	+				-2.7
3,228,846	-				-1.0
3,228,921	-				-2.3
3,228,923	+				-1.8
3,228,923	+				-2.8
3,228,923	+				-1.4
3,228,923	+				+1.6
3,228,923	+				-0.0
3,228,924	-				-0.6
3,228,924	-				+1.0
3,228,924	-				-0.6
3,229,023	+		ABIE53_002859	0.26	+2.1
3,229,024	-		ABIE53_002859	0.26	-1.4
3,229,024	-		ABIE53_002859	0.26	-3.5
3,229,024	-		ABIE53_002859	0.26	-1.4
3,229,024	-		ABIE53_002859	0.26	+1.0
3,229,024	-		ABIE53_002859	0.26	+2.0
3,229,024	-		ABIE53_002859	0.26	+1.0
3,229,033	-		ABIE53_002859	0.28	-2.2
3,229,039	-		ABIE53_002859	0.29	-1.4
3,229,041	+		ABIE53_002859	0.30	-0.0
3,229,041	+		ABIE53_002859	0.30	-2.6
3,229,041	+		ABIE53_002859	0.30	-0.0
3,229,041	+		ABIE53_002859	0.30	+3.0
3,229,051	-		ABIE53_002859	0.32	-2.7
3,229,051	-		ABIE53_002859	0.32	-0.0
3,229,053	+		ABIE53_002859	0.32	-1.0
3,229,053	+		ABIE53_002859	0.32	-1.9
3,229,054	-		ABIE53_002859	0.32	-1.8
3,229,071	+		ABIE53_002859	0.36	-3.4
3,229,072	-		ABIE53_002859	0.36	+1.0
3,229,072	-		ABIE53_002859	0.36	-1.0
3,229,072	-		ABIE53_002859	0.36	-1.5
3,229,074	+		ABIE53_002859	0.36	-3.2
3,229,074	+		ABIE53_002859	0.36	-2.5
3,229,074	+		ABIE53_002859	0.36	-0.7
3,229,074	+		ABIE53_002859	0.36	-2.4
3,229,075	-		ABIE53_002859	0.37	-1.0
3,229,097	+		ABIE53_002859	0.41	-2.0