Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001966

Experiment: Acetylated xylan 10 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetylated xylan 10 g/L (C)
2,217,580	-				-2.1
2,217,781	+		ABIE53_001965	0.33	-0.4
2,217,781	+		ABIE53_001965	0.33	+0.2
2,217,781	+		ABIE53_001965	0.33	-2.1
2,217,781	+		ABIE53_001965	0.33	+1.2
2,217,781	+		ABIE53_001965	0.33	+0.2
2,217,782	-		ABIE53_001965	0.33	+1.2
2,217,782	-		ABIE53_001965	0.33	-0.8
2,218,062	+		ABIE53_001965	0.89	-1.4
2,218,063	-		ABIE53_001965	0.90	-3.6
2,218,063	-		ABIE53_001965	0.90	+1.2
2,218,063	-		ABIE53_001965	0.90	+2.2
2,218,095	+				-1.8
2,218,114	+				-1.0
2,218,114	+				+1.0
2,218,114	+				-1.1
2,218,114	+				-3.7
2,218,114	+				-0.8
2,218,114	+				-0.1
2,218,114	+				-0.8
2,218,114	+				+1.2
2,218,114	+				+0.2
2,218,114	+				-3.9
2,218,114	+				-2.1
2,218,114	+				-0.4
2,218,114	+				+0.2
2,218,114	+				-2.6
2,218,115	-				-1.6
2,218,115	-				-1.6
2,218,115	-				+0.3
2,218,115	-				-1.6
2,218,115	-				-1.8
2,218,116	+				+1.2
2,218,116	+				+0.3
2,218,116	+				+0.4
2,218,116	+				+0.6
2,218,117	-				+1.2
2,218,163	-				-0.4
2,218,169	+				-2.1
2,218,169	+				-0.4
2,218,170	-				+1.2
2,218,170	-				-0.8
2,218,170	-				+1.2
2,218,180	+				-1.1
2,218,201	+				+2.2
2,218,201	+				+0.5
2,218,202	-				+1.2
2,218,241	+				-0.4
2,218,241	+				-2.6
2,218,241	+				-0.2
2,218,241	+				+1.2
2,218,241	+				-2.3
2,218,241	+				+1.2
2,218,242	-				-2.1
2,218,242	-				-2.3
2,218,242	-				-1.1
2,218,242	-				-0.4
2,218,242	-				+0.8
2,218,284	+				+1.2
2,218,285	-				-2.1
2,218,458	+				-0.8
2,218,494	+				-1.9
2,218,494	+				-1.4
2,218,495	-				+0.2
2,218,495	-				+1.2
2,218,500	+				-2.6
2,218,500	+				+0.6
2,218,539	+		ABIE53_001966	0.11	+2.2
2,218,794	+		ABIE53_001966	0.33	-0.1
2,218,850	+		ABIE53_001966	0.37	+2.8
2,218,850	+		ABIE53_001966	0.37	-0.6
2,218,850	+		ABIE53_001966	0.37	-1.1
2,218,850	+		ABIE53_001966	0.37	-3.3
2,218,850	+		ABIE53_001966	0.37	-1.6
2,218,850	+		ABIE53_001966	0.37	-1.4
2,218,851	-		ABIE53_001966	0.37	-0.7
2,218,870	-		ABIE53_001966	0.39	+2.2
2,218,870	-		ABIE53_001966	0.39	-0.5
2,218,912	-		ABIE53_001966	0.43	-3.6
2,218,991	+		ABIE53_001966	0.50	+1.2
2,218,992	-		ABIE53_001966	0.50	+0.6
2,219,001	+		ABIE53_001966	0.50	+0.4
2,219,001	+		ABIE53_001966	0.50	+1.2
2,219,001	+		ABIE53_001966	0.50	+1.6
2,219,001	+		ABIE53_001966	0.50	-0.8
2,219,001	+		ABIE53_001966	0.50	+0.2
2,219,001	+		ABIE53_001966	0.50	-1.3
2,219,001	+		ABIE53_001966	0.50	-0.8
2,219,001	+		ABIE53_001966	0.50	+1.2
2,219,002	-		ABIE53_001966	0.50	-0.4
2,219,002	-		ABIE53_001966	0.50	-2.0
2,219,002	-		ABIE53_001966	0.50	-0.4
2,219,002	-		ABIE53_001966	0.50	+1.2
2,219,002	-		ABIE53_001966	0.50	+0.2
2,219,002	-		ABIE53_001966	0.50	+3.5
2,219,002	-		ABIE53_001966	0.50	-2.3
2,219,385	+		ABIE53_001966	0.83	+0.2
2,219,385	+		ABIE53_001966	0.83	+1.2
2,219,386	-		ABIE53_001966	0.84	-0.6
2,219,446	-		ABIE53_001966	0.89	+1.2
2,219,547	+				+0.2
2,219,547	+				-3.2
2,219,547	+				-0.4
2,219,547	+				-1.9
2,219,547	+				+0.2
2,219,547	+				-0.3
2,219,547	+				+0.5
2,219,547	+				-0.4
2,219,548	-				-2.8
2,219,548	-				-1.1
2,219,548	-				-1.9
2,219,548	-				+1.2
2,219,548	-				-2.4
2,219,548	-				-0.6
2,219,548	-				+1.8
2,219,841	+		ABIE53_001967	0.25	+1.5
2,219,841	+		ABIE53_001967	0.25	-0.3
2,219,841	+		ABIE53_001967	0.25	-2.6
2,219,841	+		ABIE53_001967	0.25	+1.2
2,219,841	+		ABIE53_001967	0.25	-1.6
2,219,841	+		ABIE53_001967	0.25	-0.8
2,219,841	+		ABIE53_001967	0.25	-2.8
2,219,841	+		ABIE53_001967	0.25	+0.2
2,219,842	-		ABIE53_001967	0.25	-1.6
2,220,022	+		ABIE53_001967	0.46	-0.4
2,220,022	+		ABIE53_001967	0.46	-0.2
2,220,122	+		ABIE53_001967	0.57	+0.2
2,220,122	+		ABIE53_001967	0.57	-0.4
2,220,122	+		ABIE53_001967	0.57	-2.3
2,220,123	-		ABIE53_001967	0.57	-0.4
2,220,123	-		ABIE53_001967	0.57	+0.2
2,220,123	-		ABIE53_001967	0.57	+1.2
2,220,186	-		ABIE53_001967	0.64	+0.9
2,220,186	-		ABIE53_001967	0.64	-0.4
2,220,201	+		ABIE53_001967	0.66	+0.2
2,220,201	+		ABIE53_001967	0.66	-0.5
2,220,202	-		ABIE53_001967	0.66	+1.2
2,220,209	+		ABIE53_001967	0.67	+1.2
2,220,332	+		ABIE53_001967	0.81	-1.6
2,220,332	+		ABIE53_001967	0.81	-2.1
2,220,332	+		ABIE53_001967	0.81	-1.1
2,220,332	+		ABIE53_001967	0.81	-1.1
2,220,332	+		ABIE53_001967	0.81	+0.2
2,220,332	+		ABIE53_001967	0.81	+1.2
2,220,333	-		ABIE53_001967	0.81	+3.3
2,220,333	-		ABIE53_001967	0.81	-2.8
2,220,333	-		ABIE53_001967	0.81	+1.8
2,220,333	-		ABIE53_001967	0.81	+2.8
2,220,395	+		ABIE53_001967	0.89	+2.2
2,220,396	-		ABIE53_001967	0.89	+0.8
2,220,396	-		ABIE53_001967	0.89	+1.2
2,220,396	-		ABIE53_001967	0.89	+0.2
2,220,396	-		ABIE53_001967	0.89	-0.6
2,220,396	-		ABIE53_001967	0.89	+1.8
2,220,470	+				-1.6
2,220,470	+				+1.2
2,220,471	-				+0.2
2,220,484	+				-0.8
2,220,484	+				+0.6
2,220,484	+				-0.4
2,220,484	+				-2.0
2,220,485	-				+1.2
2,220,485	-				+1.4
2,220,485	-				-0.8
2,220,485	-				+1.2
2,220,485	-				-0.4
2,220,485	-				-0.4
2,220,485	-				+0.2
2,220,485	-				+1.2