Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000885

Experiment: Acetylated xylan 10 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000883 and ABIE53_000884 overlap by 4 nucleotidesABIE53_000884 and ABIE53_000885 are separated by 10 nucleotidesABIE53_000885 and ABIE53_000886 are separated by 157 nucleotidesABIE53_000886 and ABIE53_000887 are separated by 58 nucleotides ABIE53_000883: ABIE53_000883 - colicin import membrane protein, at 961,417 to 962,430 _000883 ABIE53_000884: ABIE53_000884 - biopolymer transport protein TolR, at 962,427 to 962,873 _000884 ABIE53_000885: ABIE53_000885 - biopolymer transport protein TolQ, at 962,884 to 963,561 _000885 ABIE53_000886: ABIE53_000886 - acyl-CoA thioester hydrolase, at 963,719 to 964,198 _000886 ABIE53_000887: ABIE53_000887 - NADP-dependent 3-hydroxy acid dehydrogenase YdfG, at 964,257 to 965,366 _000887 Position (kb) 962 963 964Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 962.321 kb on + strand, within ABIE53_000883at 962.321 kb on + strand, within ABIE53_000883at 962.421 kb on + strandat 962.421 kb on + strandat 962.506 kb on + strand, within ABIE53_000884at 962.635 kb on + strand, within ABIE53_000884at 962.635 kb on + strand, within ABIE53_000884at 962.635 kb on + strand, within ABIE53_000884at 962.795 kb on + strand, within ABIE53_000884at 962.795 kb on + strand, within ABIE53_000884at 962.797 kb on + strand, within ABIE53_000884at 962.797 kb on + strand, within ABIE53_000884at 962.797 kb on + strand, within ABIE53_000884at 962.797 kb on + strand, within ABIE53_000884at 962.797 kb on + strand, within ABIE53_000884at 962.885 kb on + strandat 962.886 kb on - strandat 962.886 kb on - strandat 962.886 kb on - strandat 962.978 kb on + strand, within ABIE53_000885at 962.978 kb on + strand, within ABIE53_000885at 962.978 kb on + strand, within ABIE53_000885at 962.978 kb on + strand, within ABIE53_000885at 962.978 kb on + strand, within ABIE53_000885at 962.978 kb on + strand, within ABIE53_000885at 962.979 kb on - strand, within ABIE53_000885at 962.979 kb on - strand, within ABIE53_000885at 962.979 kb on - strand, within ABIE53_000885at 963.135 kb on + strand, within ABIE53_000885at 963.137 kb on + strand, within ABIE53_000885at 963.137 kb on + strand, within ABIE53_000885at 963.137 kb on + strand, within ABIE53_000885at 963.137 kb on + strand, within ABIE53_000885at 963.137 kb on + strand, within ABIE53_000885at 963.137 kb on + strand, within ABIE53_000885at 963.137 kb on + strand, within ABIE53_000885at 963.138 kb on - strand, within ABIE53_000885at 963.138 kb on - strand, within ABIE53_000885at 963.316 kb on + strand, within ABIE53_000885at 963.339 kb on + strand, within ABIE53_000885at 963.339 kb on + strand, within ABIE53_000885at 963.357 kb on - strand, within ABIE53_000885at 963.357 kb on - strand, within ABIE53_000885at 963.523 kb on + strandat 963.552 kb on + strandat 963.552 kb on + strandat 963.552 kb on + strandat 963.553 kb on - strandat 963.553 kb on - strandat 963.553 kb on - strandat 963.553 kb on - strandat 963.553 kb on - strandat 963.561 kb on + strandat 963.562 kb on - strandat 963.562 kb on - strandat 963.562 kb on - strandat 963.562 kb on - strandat 963.562 kb on - strandat 963.562 kb on - strandat 963.575 kb on - strandat 963.575 kb on - strandat 963.575 kb on - strandat 963.575 kb on - strandat 963.708 kb on - strandat 963.796 kb on + strand, within ABIE53_000886at 963.796 kb on + strand, within ABIE53_000886at 963.796 kb on + strand, within ABIE53_000886at 963.796 kb on + strand, within ABIE53_000886at 963.797 kb on - strand, within ABIE53_000886at 963.797 kb on - strand, within ABIE53_000886at 963.797 kb on - strand, within ABIE53_000886at 963.982 kb on + strand, within ABIE53_000886at 963.982 kb on + strand, within ABIE53_000886at 964.083 kb on + strand, within ABIE53_000886at 964.083 kb on + strand, within ABIE53_000886at 964.083 kb on + strand, within ABIE53_000886at 964.083 kb on + strand, within ABIE53_000886at 964.083 kb on + strand, within ABIE53_000886at 964.083 kb on + strand, within ABIE53_000886at 964.083 kb on + strand, within ABIE53_000886at 964.083 kb on + strand, within ABIE53_000886at 964.084 kb on - strand, within ABIE53_000886at 964.084 kb on - strand, within ABIE53_000886at 964.084 kb on - strand, within ABIE53_000886at 964.084 kb on - strand, within ABIE53_000886at 964.093 kb on - strand, within ABIE53_000886at 964.093 kb on - strand, within ABIE53_000886at 964.093 kb on - strand, within ABIE53_000886at 964.118 kb on - strand, within ABIE53_000886at 964.118 kb on - strand, within ABIE53_000886at 964.118 kb on - strand, within ABIE53_000886at 964.125 kb on + strand, within ABIE53_000886at 964.125 kb on + strand, within ABIE53_000886at 964.125 kb on + strand, within ABIE53_000886at 964.125 kb on + strand, within ABIE53_000886at 964.126 kb on - strand, within ABIE53_000886at 964.126 kb on - strand, within ABIE53_000886at 964.126 kb on - strand, within ABIE53_000886at 964.126 kb on - strand, within ABIE53_000886at 964.126 kb on - strand, within ABIE53_000886at 964.126 kb on - strand, within ABIE53_000886at 964.126 kb on - strand, within ABIE53_000886at 964.126 kb on - strand, within ABIE53_000886at 964.126 kb on - strand, within ABIE53_000886at 964.128 kb on + strand, within ABIE53_000886at 964.128 kb on + strand, within ABIE53_000886at 964.128 kb on + strand, within ABIE53_000886at 964.129 kb on - strand, within ABIE53_000886at 964.129 kb on - strand, within ABIE53_000886at 964.183 kb on + strandat 964.183 kb on + strandat 964.183 kb on + strandat 964.183 kb on + strandat 964.183 kb on + strandat 964.183 kb on + strandat 964.183 kb on + strandat 964.184 kb on - strandat 964.184 kb on - strandat 964.184 kb on - strandat 964.184 kb on - strandat 964.184 kb on - strandat 964.354 kb on + strandat 964.354 kb on + strandat 964.355 kb on - strandat 964.355 kb on - strandat 964.402 kb on + strand, within ABIE53_000887at 964.403 kb on - strand, within ABIE53_000887at 964.403 kb on - strand, within ABIE53_000887at 964.403 kb on - strand, within ABIE53_000887at 964.403 kb on - strand, within ABIE53_000887

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Per-strain Table

Position Strand Gene LocusTag Fraction Acetylated xylan 10 g/L (C)
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962,321 + ABIE53_000883 0.89 -1.7
962,321 + ABIE53_000883 0.89 -2.9
962,421 + -1.2
962,421 + -1.2
962,506 + ABIE53_000884 0.18 -5.3
962,635 + ABIE53_000884 0.47 -0.2
962,635 + ABIE53_000884 0.47 -2.3
962,635 + ABIE53_000884 0.47 -0.2
962,795 + ABIE53_000884 0.82 -0.7
962,795 + ABIE53_000884 0.82 -2.0
962,797 + ABIE53_000884 0.83 -4.1
962,797 + ABIE53_000884 0.83 -3.1
962,797 + ABIE53_000884 0.83 -0.2
962,797 + ABIE53_000884 0.83 -2.5
962,797 + ABIE53_000884 0.83 -2.5
962,885 + -2.6
962,886 - +2.8
962,886 - +0.1
962,886 - -0.2
962,978 + ABIE53_000885 0.14 -5.1
962,978 + ABIE53_000885 0.14 -0.2
962,978 + ABIE53_000885 0.14 -5.0
962,978 + ABIE53_000885 0.14 -3.1
962,978 + ABIE53_000885 0.14 -1.5
962,978 + ABIE53_000885 0.14 -5.4
962,979 - ABIE53_000885 0.14 -2.5
962,979 - ABIE53_000885 0.14 -0.2
962,979 - ABIE53_000885 0.14 -2.6
963,135 + ABIE53_000885 0.37 -2.0
963,137 + ABIE53_000885 0.37 -2.5
963,137 + ABIE53_000885 0.37 -0.2
963,137 + ABIE53_000885 0.37 -1.2
963,137 + ABIE53_000885 0.37 -1.7
963,137 + ABIE53_000885 0.37 -3.4
963,137 + ABIE53_000885 0.37 -3.3
963,137 + ABIE53_000885 0.37 -2.2
963,138 - ABIE53_000885 0.37 -0.7
963,138 - ABIE53_000885 0.37 -0.2
963,316 + ABIE53_000885 0.64 -0.7
963,339 + ABIE53_000885 0.67 -1.2
963,339 + ABIE53_000885 0.67 -0.2
963,357 - ABIE53_000885 0.70 -2.0
963,357 - ABIE53_000885 0.70 -3.7
963,523 + -5.9
963,552 + -0.2
963,552 + -0.7
963,552 + -1.5
963,553 - +0.8
963,553 - -2.6
963,553 - -3.0
963,553 - -0.2
963,553 - -2.5
963,561 + -1.7
963,562 - +0.1
963,562 - -1.2
963,562 - +0.8
963,562 - -0.2
963,562 - -1.7
963,562 - -0.2
963,575 - -0.6
963,575 - -2.5
963,575 - -0.2
963,575 - -0.8
963,708 - -0.8
963,796 + ABIE53_000886 0.16 +1.8
963,796 + ABIE53_000886 0.16 +1.1
963,796 + ABIE53_000886 0.16 -0.2
963,796 + ABIE53_000886 0.16 +1.8
963,797 - ABIE53_000886 0.16 -0.2
963,797 - ABIE53_000886 0.16 -0.8
963,797 - ABIE53_000886 0.16 -0.2
963,982 + ABIE53_000886 0.55 +0.3
963,982 + ABIE53_000886 0.55 -2.0
964,083 + ABIE53_000886 0.76 +2.4
964,083 + ABIE53_000886 0.76 -3.6
964,083 + ABIE53_000886 0.76 -0.6
964,083 + ABIE53_000886 0.76 -0.0
964,083 + ABIE53_000886 0.76 -0.2
964,083 + ABIE53_000886 0.76 +0.8
964,083 + ABIE53_000886 0.76 +0.1
964,083 + ABIE53_000886 0.76 -0.6
964,084 - ABIE53_000886 0.76 -1.4
964,084 - ABIE53_000886 0.76 -1.5
964,084 - ABIE53_000886 0.76 +0.8
964,084 - ABIE53_000886 0.76 -1.4
964,093 - ABIE53_000886 0.78 -0.7
964,093 - ABIE53_000886 0.78 +0.8
964,093 - ABIE53_000886 0.78 +0.8
964,118 - ABIE53_000886 0.83 +2.8
964,118 - ABIE53_000886 0.83 +1.2
964,118 - ABIE53_000886 0.83 -1.2
964,125 + ABIE53_000886 0.85 -3.7
964,125 + ABIE53_000886 0.85 -0.5
964,125 + ABIE53_000886 0.85 -1.7
964,125 + ABIE53_000886 0.85 -2.6
964,126 - ABIE53_000886 0.85 -1.5
964,126 - ABIE53_000886 0.85 -0.6
964,126 - ABIE53_000886 0.85 -1.9
964,126 - ABIE53_000886 0.85 +0.8
964,126 - ABIE53_000886 0.85 -1.8
964,126 - ABIE53_000886 0.85 -1.1
964,126 - ABIE53_000886 0.85 -0.0
964,126 - ABIE53_000886 0.85 -1.6
964,126 - ABIE53_000886 0.85 -0.5
964,128 + ABIE53_000886 0.85 -3.8
964,128 + ABIE53_000886 0.85 +0.3
964,128 + ABIE53_000886 0.85 -0.4
964,129 - ABIE53_000886 0.85 +0.8
964,129 - ABIE53_000886 0.85 -0.5
964,183 + +0.8
964,183 + -1.2
964,183 + -2.2
964,183 + -3.2
964,183 + -3.1
964,183 + -0.7
964,183 + -0.2
964,184 - -1.7
964,184 - -0.7
964,184 - +0.3
964,184 - +0.1
964,184 - -2.6
964,354 + +2.4
964,354 + +0.3
964,355 - -0.4
964,355 - -2.0
964,402 + ABIE53_000887 0.13 -1.2
964,403 - ABIE53_000887 0.13 -0.6
964,403 - ABIE53_000887 0.13 -1.0
964,403 - ABIE53_000887 0.13 -0.2
964,403 - ABIE53_000887 0.13 +0.8

Or see this region's nucleotide sequence