Experiment: Acetylated xylan 10 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000694 and ABIE53_000695 are separated by 360 nucleotides ABIE53_000695 and ABIE53_000696 are separated by 39 nucleotides ABIE53_000696 and ABIE53_000697 are separated by 2 nucleotides
ABIE53_000694: ABIE53_000694 - RNA polymerase sigma-32 factor, at 750,025 to 750,960
_000694
ABIE53_000695: ABIE53_000695 - lipid A 3-O-deacylase, at 751,321 to 751,884
_000695
ABIE53_000696: ABIE53_000696 - ketosteroid isomerase-like protein, at 751,924 to 752,307
_000696
ABIE53_000697: ABIE53_000697 - anthranilate phosphoribosyltransferase, at 752,310 to 753,281
_000697
Position (kb) 751
752
753 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 751.023 kb on + strand at 751.024 kb on - strand at 751.024 kb on - strand at 751.024 kb on - strand at 751.046 kb on + strand at 751.049 kb on + strand at 751.049 kb on + strand at 751.049 kb on + strand at 751.049 kb on + strand at 751.049 kb on + strand at 751.049 kb on + strand at 751.050 kb on - strand at 751.053 kb on + strand at 751.053 kb on + strand at 751.053 kb on + strand at 751.053 kb on + strand at 751.053 kb on + strand at 751.053 kb on + strand at 751.054 kb on - strand at 751.054 kb on - strand at 751.054 kb on - strand at 751.054 kb on - strand at 751.054 kb on - strand at 751.054 kb on - strand at 751.063 kb on - strand at 751.109 kb on + strand at 751.148 kb on + strand at 751.148 kb on + strand at 751.156 kb on - strand at 751.215 kb on + strand at 751.215 kb on + strand at 751.215 kb on + strand at 751.216 kb on - strand at 751.216 kb on - strand at 751.216 kb on - strand at 751.238 kb on + strand at 751.239 kb on - strand at 751.269 kb on - strand at 751.273 kb on + strand at 751.273 kb on + strand at 751.273 kb on + strand at 751.273 kb on + strand at 751.273 kb on + strand at 751.274 kb on - strand at 751.286 kb on + strand at 751.286 kb on + strand at 751.358 kb on + strand at 751.563 kb on + strand, within ABIE53_000695 at 751.563 kb on + strand, within ABIE53_000695 at 751.563 kb on + strand, within ABIE53_000695 at 751.563 kb on + strand, within ABIE53_000695 at 751.564 kb on - strand, within ABIE53_000695 at 751.614 kb on + strand, within ABIE53_000695 at 751.614 kb on + strand, within ABIE53_000695 at 751.615 kb on - strand, within ABIE53_000695 at 751.615 kb on - strand, within ABIE53_000695 at 751.615 kb on - strand, within ABIE53_000695 at 751.615 kb on - strand, within ABIE53_000695 at 751.783 kb on + strand, within ABIE53_000695 at 751.784 kb on - strand, within ABIE53_000695 at 751.845 kb on + strand at 751.845 kb on + strand at 751.846 kb on - strand at 751.847 kb on + strand at 751.848 kb on - strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.875 kb on + strand at 751.875 kb on + strand at 751.875 kb on + strand at 751.875 kb on + strand at 751.875 kb on + strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.908 kb on + strand at 751.908 kb on + strand at 751.908 kb on + strand at 751.909 kb on - strand at 751.909 kb on - strand at 752.035 kb on + strand, within ABIE53_000696 at 752.035 kb on + strand, within ABIE53_000696 at 752.035 kb on + strand, within ABIE53_000696 at 752.035 kb on + strand, within ABIE53_000696 at 752.035 kb on + strand, within ABIE53_000696 at 752.035 kb on + strand, within ABIE53_000696 at 752.035 kb on + strand, within ABIE53_000696 at 752.035 kb on + strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.036 kb on - strand, within ABIE53_000696 at 752.088 kb on + strand, within ABIE53_000696 at 752.088 kb on + strand, within ABIE53_000696 at 752.230 kb on + strand, within ABIE53_000696 at 752.230 kb on + strand, within ABIE53_000696 at 752.230 kb on + strand, within ABIE53_000696 at 752.230 kb on + strand, within ABIE53_000696 at 752.231 kb on - strand, within ABIE53_000696 at 752.231 kb on - strand, within ABIE53_000696 at 752.231 kb on - strand, within ABIE53_000696 at 752.231 kb on - strand, within ABIE53_000696 at 752.231 kb on - strand, within ABIE53_000696 at 752.231 kb on - strand, within ABIE53_000696 at 752.231 kb on - strand, within ABIE53_000696 at 752.231 kb on - strand, within ABIE53_000696 at 752.231 kb on - strand, within ABIE53_000696 at 752.244 kb on + strand, within ABIE53_000696 at 752.244 kb on + strand, within ABIE53_000696 at 752.244 kb on + strand, within ABIE53_000696 at 752.245 kb on - strand, within ABIE53_000696 at 752.311 kb on + strand at 752.311 kb on + strand at 752.311 kb on + strand at 752.311 kb on + strand at 752.311 kb on + strand at 752.312 kb on - strand at 752.312 kb on - strand at 752.312 kb on - strand at 752.440 kb on - strand, within ABIE53_000697 at 752.440 kb on - strand, within ABIE53_000697 at 752.613 kb on + strand, within ABIE53_000697 at 752.613 kb on + strand, within ABIE53_000697 at 752.613 kb on + strand, within ABIE53_000697 at 752.613 kb on + strand, within ABIE53_000697 at 752.614 kb on - strand, within ABIE53_000697 at 752.635 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.650 kb on + strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.651 kb on - strand, within ABIE53_000697 at 752.823 kb on - strand, within ABIE53_000697 at 752.990 kb on - strand, within ABIE53_000697 at 752.990 kb on - strand, within ABIE53_000697 at 752.990 kb on - strand, within ABIE53_000697 at 753.107 kb on - strand, within ABIE53_000697 at 753.166 kb on + strand, within ABIE53_000697 at 753.166 kb on + strand, within ABIE53_000697 at 753.166 kb on + strand, within ABIE53_000697 at 753.166 kb on + strand, within ABIE53_000697 at 753.166 kb on + strand, within ABIE53_000697 at 753.166 kb on + strand, within ABIE53_000697 at 753.167 kb on - strand, within ABIE53_000697 at 753.167 kb on - strand, within ABIE53_000697 at 753.167 kb on - strand, within ABIE53_000697 at 753.293 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acetylated xylan 10 g/L (C) remove 751,023 + -2.5 751,024 - -0.9 751,024 - +1.2 751,024 - +0.7 751,046 + -2.1 751,049 + +0.7 751,049 + -0.6 751,049 + +0.7 751,049 + +0.7 751,049 + -0.9 751,049 + -2.1 751,050 - -3.0 751,053 + -0.3 751,053 + -0.9 751,053 + +0.7 751,053 + -3.0 751,053 + -2.5 751,053 + +0.7 751,054 - +1.7 751,054 - -1.3 751,054 - -1.3 751,054 - -1.8 751,054 - -0.9 751,054 - -0.5 751,063 - -2.6 751,109 + -1.5 751,148 + -1.5 751,148 + +0.3 751,156 - +0.7 751,215 + -1.8 751,215 + -2.8 751,215 + +0.7 751,216 - -2.3 751,216 - +0.7 751,216 - +0.7 751,238 + -3.2 751,239 - +0.7 751,269 - +0.7 751,273 + +0.7 751,273 + +2.3 751,273 + +1.7 751,273 + +0.7 751,273 + -0.3 751,274 - +0.4 751,286 + -2.3 751,286 + +0.7 751,358 + -2.5 751,563 + ABIE53_000695 0.43 -3.2 751,563 + ABIE53_000695 0.43 -1.1 751,563 + ABIE53_000695 0.43 -0.3 751,563 + ABIE53_000695 0.43 -0.6 751,564 - ABIE53_000695 0.43 +0.1 751,614 + ABIE53_000695 0.52 -0.6 751,614 + ABIE53_000695 0.52 -0.9 751,615 - ABIE53_000695 0.52 +2.0 751,615 - ABIE53_000695 0.52 +0.3 751,615 - ABIE53_000695 0.52 -1.3 751,615 - ABIE53_000695 0.52 -0.7 751,783 + ABIE53_000695 0.82 -2.1 751,784 - ABIE53_000695 0.82 +0.7 751,845 + +0.7 751,845 + +0.7 751,846 - -0.9 751,847 + -1.2 751,848 - +0.7 751,862 + -0.1 751,862 + +1.4 751,862 + +1.1 751,862 + -1.6 751,862 + -0.3 751,862 + -1.8 751,862 + -1.3 751,862 + +1.0 751,862 + +0.1 751,862 + -0.3 751,862 + +0.2 751,862 + +1.4 751,863 - -2.5 751,863 - +1.3 751,863 - -3.2 751,863 - -2.3 751,863 - -3.8 751,863 - -3.0 751,863 - -2.6 751,863 - -0.2 751,863 - -1.9 751,863 - -2.0 751,863 - -2.0 751,863 - -2.2 751,863 - -1.4 751,863 - +1.7 751,863 - +1.2 751,863 - -0.3 751,863 - -1.4 751,863 - -2.0 751,863 - -0.7 751,863 - -0.6 751,864 + +1.0 751,864 + -0.4 751,864 + -0.5 751,864 + +0.0 751,864 + -1.1 751,864 + -2.7 751,864 + -2.2 751,864 + +1.3 751,864 + -0.9 751,864 + -0.8 751,864 + +2.2 751,864 + -0.7 751,864 + +3.0 751,865 - -0.3 751,865 - -0.5 751,865 - +0.7 751,865 - -0.3 751,865 - +0.7 751,865 - -1.9 751,865 - +0.7 751,865 - -2.6 751,865 - -0.3 751,865 - -0.9 751,865 - -2.5 751,873 + +0.7 751,873 + -2.1 751,873 + -1.8 751,873 + -2.1 751,873 + -0.8 751,873 + +0.7 751,873 + -0.6 751,873 + +0.0 751,873 + -2.5 751,874 - -0.3 751,874 - +0.7 751,874 - -1.8 751,874 - -0.8 751,874 - +1.3 751,874 - +0.7 751,874 - -0.6 751,874 - -1.8 751,874 - -2.9 751,874 - -0.6 751,874 - -1.7 751,874 - -1.9 751,875 + -1.1 751,875 + -1.0 751,875 + -1.3 751,875 + +1.0 751,875 + -1.3 751,876 - -0.3 751,876 - -0.3 751,876 - -4.2 751,876 - +0.7 751,876 - -1.4 751,876 - +1.5 751,876 - -0.9 751,876 - -2.1 751,876 - +0.7 751,876 - -0.7 751,876 - -0.3 751,908 + -1.5 751,908 + +0.1 751,908 + -0.9 751,909 - -0.7 751,909 - -2.4 752,035 + ABIE53_000696 0.29 +1.1 752,035 + ABIE53_000696 0.29 -1.3 752,035 + ABIE53_000696 0.29 -3.7 752,035 + ABIE53_000696 0.29 -1.8 752,035 + ABIE53_000696 0.29 +0.3 752,035 + ABIE53_000696 0.29 +0.5 752,035 + ABIE53_000696 0.29 +0.2 752,035 + ABIE53_000696 0.29 +0.7 752,036 - ABIE53_000696 0.29 -1.3 752,036 - ABIE53_000696 0.29 -0.3 752,036 - ABIE53_000696 0.29 -2.1 752,036 - ABIE53_000696 0.29 +0.2 752,036 - ABIE53_000696 0.29 +2.2 752,036 - ABIE53_000696 0.29 -1.6 752,036 - ABIE53_000696 0.29 +1.0 752,036 - ABIE53_000696 0.29 -0.6 752,036 - ABIE53_000696 0.29 -0.3 752,036 - ABIE53_000696 0.29 -2.1 752,036 - ABIE53_000696 0.29 -0.1 752,036 - ABIE53_000696 0.29 -1.1 752,036 - ABIE53_000696 0.29 -1.7 752,036 - ABIE53_000696 0.29 -3.0 752,036 - ABIE53_000696 0.29 -2.5 752,036 - ABIE53_000696 0.29 +1.0 752,036 - ABIE53_000696 0.29 -1.3 752,036 - ABIE53_000696 0.29 -0.5 752,088 + ABIE53_000696 0.43 -0.9 752,088 + ABIE53_000696 0.43 -0.1 752,230 + ABIE53_000696 0.80 -0.9 752,230 + ABIE53_000696 0.80 -0.4 752,230 + ABIE53_000696 0.80 -0.7 752,230 + ABIE53_000696 0.80 -1.4 752,231 - ABIE53_000696 0.80 -1.3 752,231 - ABIE53_000696 0.80 -3.9 752,231 - ABIE53_000696 0.80 -0.9 752,231 - ABIE53_000696 0.80 -1.9 752,231 - ABIE53_000696 0.80 +0.7 752,231 - ABIE53_000696 0.80 -1.0 752,231 - ABIE53_000696 0.80 -1.1 752,231 - ABIE53_000696 0.80 +0.7 752,231 - ABIE53_000696 0.80 -1.2 752,244 + ABIE53_000696 0.83 +0.5 752,244 + ABIE53_000696 0.83 -0.3 752,244 + ABIE53_000696 0.83 -0.3 752,245 - ABIE53_000696 0.84 -1.7 752,311 + +0.3 752,311 + -1.4 752,311 + -0.8 752,311 + +2.3 752,311 + -1.0 752,312 - +3.0 752,312 - -1.3 752,312 - -1.6 752,440 - ABIE53_000697 0.13 -0.3 752,440 - ABIE53_000697 0.13 -2.3 752,613 + ABIE53_000697 0.31 -1.5 752,613 + ABIE53_000697 0.31 -2.5 752,613 + ABIE53_000697 0.31 -1.9 752,613 + ABIE53_000697 0.31 +1.3 752,614 - ABIE53_000697 0.31 -1.9 752,635 + ABIE53_000697 0.33 +0.7 752,650 + ABIE53_000697 0.35 -3.5 752,650 + ABIE53_000697 0.35 -1.3 752,650 + ABIE53_000697 0.35 -3.7 752,650 + ABIE53_000697 0.35 +0.4 752,650 + ABIE53_000697 0.35 -2.5 752,650 + ABIE53_000697 0.35 -3.9 752,650 + ABIE53_000697 0.35 +1.7 752,650 + ABIE53_000697 0.35 -0.1 752,650 + ABIE53_000697 0.35 -0.7 752,650 + ABIE53_000697 0.35 -3.0 752,651 - ABIE53_000697 0.35 -1.3 752,651 - ABIE53_000697 0.35 -2.7 752,651 - ABIE53_000697 0.35 -1.3 752,651 - ABIE53_000697 0.35 -0.3 752,651 - ABIE53_000697 0.35 -4.1 752,651 - ABIE53_000697 0.35 -0.3 752,651 - ABIE53_000697 0.35 -3.1 752,651 - ABIE53_000697 0.35 -1.6 752,651 - ABIE53_000697 0.35 -0.5 752,651 - ABIE53_000697 0.35 -0.6 752,651 - ABIE53_000697 0.35 -0.5 752,651 - ABIE53_000697 0.35 -1.3 752,651 - ABIE53_000697 0.35 -3.4 752,651 - ABIE53_000697 0.35 -0.8 752,651 - ABIE53_000697 0.35 +1.0 752,823 - ABIE53_000697 0.53 -1.8 752,990 - ABIE53_000697 0.70 -1.7 752,990 - ABIE53_000697 0.70 -3.5 752,990 - ABIE53_000697 0.70 -3.5 753,107 - ABIE53_000697 0.82 -0.6 753,166 + ABIE53_000697 0.88 -1.9 753,166 + ABIE53_000697 0.88 -4.6 753,166 + ABIE53_000697 0.88 -4.5 753,166 + ABIE53_000697 0.88 -2.6 753,166 + ABIE53_000697 0.88 -0.3 753,166 + ABIE53_000697 0.88 -2.5 753,167 - ABIE53_000697 0.88 -0.3 753,167 - ABIE53_000697 0.88 -0.3 753,167 - ABIE53_000697 0.88 -0.3 753,293 - -2.2
Or see this region's nucleotide sequence