Experiment: Acetylated xylan 10 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000596 and ABIE53_000597 are separated by 3 nucleotides ABIE53_000597 and ABIE53_000598 are separated by 16 nucleotides ABIE53_000598 and ABIE53_000599 are separated by 149 nucleotides
ABIE53_000596: ABIE53_000596 - ABC-type Fe3+-hydroxamate transport system substrate-binding protein, at 654,700 to 655,527
_000596
ABIE53_000597: ABIE53_000597 - short-subunit dehydrogenase, at 655,531 to 656,304
_000597
ABIE53_000598: ABIE53_000598 - thiol:disulfide interchange protein DsbA, at 656,321 to 657,013
_000598
ABIE53_000599: ABIE53_000599 - cell division protein FtsN, at 657,163 to 657,990
_000599
Position (kb) 655
656
657 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 654.546 kb on + strand at 654.615 kb on + strand at 654.615 kb on + strand at 654.616 kb on - strand at 654.645 kb on + strand at 654.645 kb on + strand at 654.646 kb on - strand at 654.646 kb on - strand at 654.646 kb on - strand at 654.646 kb on - strand at 654.660 kb on + strand at 654.670 kb on + strand at 654.671 kb on - strand at 654.729 kb on - strand at 654.729 kb on - strand at 654.729 kb on - strand at 654.758 kb on + strand at 654.854 kb on + strand, within ABIE53_000596 at 654.855 kb on - strand, within ABIE53_000596 at 654.855 kb on - strand, within ABIE53_000596 at 654.855 kb on - strand, within ABIE53_000596 at 655.013 kb on + strand, within ABIE53_000596 at 655.013 kb on + strand, within ABIE53_000596 at 655.013 kb on + strand, within ABIE53_000596 at 655.013 kb on + strand, within ABIE53_000596 at 655.013 kb on + strand, within ABIE53_000596 at 655.013 kb on + strand, within ABIE53_000596 at 655.013 kb on + strand, within ABIE53_000596 at 655.013 kb on + strand, within ABIE53_000596 at 655.013 kb on + strand, within ABIE53_000596 at 655.013 kb on + strand, within ABIE53_000596 at 655.013 kb on + strand, within ABIE53_000596 at 655.013 kb on + strand, within ABIE53_000596 at 655.013 kb on + strand, within ABIE53_000596 at 655.013 kb on + strand, within ABIE53_000596 at 655.013 kb on + strand, within ABIE53_000596 at 655.013 kb on + strand, within ABIE53_000596 at 655.013 kb on + strand, within ABIE53_000596 at 655.014 kb on - strand, within ABIE53_000596 at 655.014 kb on - strand, within ABIE53_000596 at 655.014 kb on - strand, within ABIE53_000596 at 655.014 kb on - strand, within ABIE53_000596 at 655.014 kb on - strand, within ABIE53_000596 at 655.014 kb on - strand, within ABIE53_000596 at 655.014 kb on - strand, within ABIE53_000596 at 655.014 kb on - strand, within ABIE53_000596 at 655.014 kb on - strand, within ABIE53_000596 at 655.014 kb on - strand, within ABIE53_000596 at 655.014 kb on - strand, within ABIE53_000596 at 655.014 kb on - strand, within ABIE53_000596 at 655.014 kb on - strand, within ABIE53_000596 at 655.014 kb on - strand, within ABIE53_000596 at 655.014 kb on - strand, within ABIE53_000596 at 655.058 kb on + strand, within ABIE53_000596 at 655.058 kb on + strand, within ABIE53_000596 at 655.058 kb on + strand, within ABIE53_000596 at 655.058 kb on + strand, within ABIE53_000596 at 655.058 kb on + strand, within ABIE53_000596 at 655.058 kb on + strand, within ABIE53_000596 at 655.059 kb on - strand, within ABIE53_000596 at 655.059 kb on - strand, within ABIE53_000596 at 655.059 kb on - strand, within ABIE53_000596 at 655.176 kb on - strand, within ABIE53_000596 at 655.176 kb on - strand, within ABIE53_000596 at 655.176 kb on - strand, within ABIE53_000596 at 655.275 kb on + strand, within ABIE53_000596 at 655.293 kb on + strand, within ABIE53_000596 at 655.293 kb on + strand, within ABIE53_000596 at 655.293 kb on + strand, within ABIE53_000596 at 655.392 kb on + strand, within ABIE53_000596 at 655.414 kb on + strand, within ABIE53_000596 at 655.533 kb on - strand at 655.583 kb on + strand at 655.583 kb on + strand at 655.583 kb on + strand at 655.724 kb on + strand, within ABIE53_000597 at 655.724 kb on + strand, within ABIE53_000597 at 655.724 kb on + strand, within ABIE53_000597 at 655.725 kb on - strand, within ABIE53_000597 at 655.725 kb on - strand, within ABIE53_000597 at 655.755 kb on + strand, within ABIE53_000597 at 655.755 kb on + strand, within ABIE53_000597 at 655.755 kb on + strand, within ABIE53_000597 at 655.756 kb on - strand, within ABIE53_000597 at 655.756 kb on - strand, within ABIE53_000597 at 655.757 kb on + strand, within ABIE53_000597 at 655.757 kb on + strand, within ABIE53_000597 at 655.758 kb on - strand, within ABIE53_000597 at 655.823 kb on + strand, within ABIE53_000597 at 655.823 kb on + strand, within ABIE53_000597 at 655.823 kb on + strand, within ABIE53_000597 at 655.824 kb on - strand, within ABIE53_000597 at 655.824 kb on - strand, within ABIE53_000597 at 655.824 kb on - strand, within ABIE53_000597 at 655.824 kb on - strand, within ABIE53_000597 at 655.851 kb on + strand, within ABIE53_000597 at 655.852 kb on - strand, within ABIE53_000597 at 655.852 kb on - strand, within ABIE53_000597 at 655.852 kb on - strand, within ABIE53_000597 at 655.852 kb on - strand, within ABIE53_000597 at 655.853 kb on + strand, within ABIE53_000597 at 655.853 kb on + strand, within ABIE53_000597 at 655.853 kb on + strand, within ABIE53_000597 at 655.853 kb on + strand, within ABIE53_000597 at 655.853 kb on + strand, within ABIE53_000597 at 655.973 kb on + strand, within ABIE53_000597 at 655.973 kb on + strand, within ABIE53_000597 at 655.973 kb on + strand, within ABIE53_000597 at 655.973 kb on + strand, within ABIE53_000597 at 655.973 kb on + strand, within ABIE53_000597 at 655.973 kb on + strand, within ABIE53_000597 at 655.974 kb on - strand, within ABIE53_000597 at 655.974 kb on - strand, within ABIE53_000597 at 655.974 kb on - strand, within ABIE53_000597 at 655.974 kb on - strand, within ABIE53_000597 at 655.974 kb on - strand, within ABIE53_000597 at 655.974 kb on - strand, within ABIE53_000597 at 656.038 kb on + strand, within ABIE53_000597 at 656.038 kb on + strand, within ABIE53_000597 at 656.039 kb on - strand, within ABIE53_000597 at 656.039 kb on - strand, within ABIE53_000597 at 656.136 kb on + strand, within ABIE53_000597 at 656.136 kb on + strand, within ABIE53_000597 at 656.138 kb on + strand, within ABIE53_000597 at 656.138 kb on + strand, within ABIE53_000597 at 656.138 kb on + strand, within ABIE53_000597 at 656.138 kb on + strand, within ABIE53_000597 at 656.138 kb on + strand, within ABIE53_000597 at 656.138 kb on + strand, within ABIE53_000597 at 656.139 kb on - strand, within ABIE53_000597 at 656.139 kb on - strand, within ABIE53_000597 at 656.139 kb on - strand, within ABIE53_000597 at 656.322 kb on + strand at 656.322 kb on + strand at 656.322 kb on + strand at 656.322 kb on + strand at 656.322 kb on + strand at 656.322 kb on + strand at 656.323 kb on - strand at 656.323 kb on - strand at 656.323 kb on - strand at 656.355 kb on + strand at 656.355 kb on + strand at 656.412 kb on + strand, within ABIE53_000598 at 656.412 kb on + strand, within ABIE53_000598 at 656.413 kb on - strand, within ABIE53_000598 at 656.454 kb on + strand, within ABIE53_000598 at 656.511 kb on + strand, within ABIE53_000598 at 656.523 kb on + strand, within ABIE53_000598 at 656.523 kb on + strand, within ABIE53_000598 at 656.523 kb on + strand, within ABIE53_000598 at 656.524 kb on - strand, within ABIE53_000598 at 656.524 kb on - strand, within ABIE53_000598 at 656.524 kb on - strand, within ABIE53_000598 at 656.524 kb on - strand, within ABIE53_000598 at 656.586 kb on + strand, within ABIE53_000598 at 656.586 kb on + strand, within ABIE53_000598 at 656.587 kb on - strand, within ABIE53_000598 at 656.664 kb on + strand, within ABIE53_000598 at 656.665 kb on - strand, within ABIE53_000598 at 656.665 kb on - strand, within ABIE53_000598 at 656.665 kb on - strand, within ABIE53_000598 at 656.665 kb on - strand, within ABIE53_000598 at 656.760 kb on + strand, within ABIE53_000598 at 656.761 kb on - strand, within ABIE53_000598 at 656.793 kb on + strand, within ABIE53_000598 at 656.794 kb on - strand, within ABIE53_000598 at 656.794 kb on - strand, within ABIE53_000598 at 656.865 kb on + strand, within ABIE53_000598 at 656.865 kb on + strand, within ABIE53_000598 at 656.976 kb on + strand at 656.976 kb on + strand at 656.977 kb on - strand at 656.977 kb on - strand at 656.982 kb on + strand at 656.982 kb on + strand at 656.982 kb on + strand at 656.982 kb on + strand at 656.982 kb on + strand at 656.982 kb on + strand at 656.983 kb on - strand at 656.983 kb on - strand at 657.077 kb on + strand at 657.077 kb on + strand at 657.077 kb on + strand at 657.077 kb on + strand at 657.078 kb on - strand at 657.078 kb on - strand at 657.078 kb on - strand at 657.078 kb on - strand at 657.078 kb on - strand at 657.078 kb on - strand at 657.124 kb on + strand at 657.125 kb on - strand at 657.164 kb on + strand at 657.164 kb on + strand at 657.164 kb on + strand at 657.164 kb on + strand at 657.164 kb on + strand at 657.164 kb on + strand at 657.164 kb on + strand at 657.165 kb on - strand at 657.165 kb on - strand at 657.165 kb on - strand at 657.165 kb on - strand at 657.165 kb on - strand at 657.165 kb on - strand at 657.165 kb on - strand at 657.165 kb on - strand at 657.165 kb on - strand at 657.165 kb on - strand at 657.165 kb on - strand at 657.275 kb on + strand, within ABIE53_000599 at 657.275 kb on + strand, within ABIE53_000599 at 657.275 kb on + strand, within ABIE53_000599 at 657.275 kb on + strand, within ABIE53_000599 at 657.275 kb on + strand, within ABIE53_000599 at 657.275 kb on + strand, within ABIE53_000599 at 657.276 kb on - strand, within ABIE53_000599 at 657.276 kb on - strand, within ABIE53_000599 at 657.276 kb on - strand, within ABIE53_000599 at 657.276 kb on - strand, within ABIE53_000599
Per-strain Table
Position Strand Gene LocusTag Fraction Acetylated xylan 10 g/L (C) remove 654,546 + -2.9 654,615 + -0.8 654,615 + +0.3 654,616 - +0.7 654,645 + -0.9 654,645 + -0.9 654,646 - +0.7 654,646 - -0.6 654,646 - -2.1 654,646 - +1.7 654,660 + -0.9 654,670 + -0.9 654,671 - -0.3 654,729 - -2.3 654,729 - -0.3 654,729 - -3.5 654,758 + +0.3 654,854 + ABIE53_000596 0.19 -0.8 654,855 - ABIE53_000596 0.19 -1.0 654,855 - ABIE53_000596 0.19 -0.9 654,855 - ABIE53_000596 0.19 -1.3 655,013 + ABIE53_000596 0.38 +1.7 655,013 + ABIE53_000596 0.38 -1.9 655,013 + ABIE53_000596 0.38 -2.5 655,013 + ABIE53_000596 0.38 -2.3 655,013 + ABIE53_000596 0.38 -0.2 655,013 + ABIE53_000596 0.38 -0.0 655,013 + ABIE53_000596 0.38 -0.2 655,013 + ABIE53_000596 0.38 +1.7 655,013 + ABIE53_000596 0.38 +0.3 655,013 + ABIE53_000596 0.38 +0.4 655,013 + ABIE53_000596 0.38 +0.0 655,013 + ABIE53_000596 0.38 +0.7 655,013 + ABIE53_000596 0.38 -1.4 655,013 + ABIE53_000596 0.38 -0.6 655,013 + ABIE53_000596 0.38 -0.5 655,013 + ABIE53_000596 0.38 -1.3 655,013 + ABIE53_000596 0.38 +0.5 655,014 - ABIE53_000596 0.38 -1.5 655,014 - ABIE53_000596 0.38 +0.7 655,014 - ABIE53_000596 0.38 -1.6 655,014 - ABIE53_000596 0.38 -2.3 655,014 - ABIE53_000596 0.38 -0.3 655,014 - ABIE53_000596 0.38 -0.3 655,014 - ABIE53_000596 0.38 -0.6 655,014 - ABIE53_000596 0.38 +0.7 655,014 - ABIE53_000596 0.38 -0.3 655,014 - ABIE53_000596 0.38 -1.1 655,014 - ABIE53_000596 0.38 +0.7 655,014 - ABIE53_000596 0.38 +0.7 655,014 - ABIE53_000596 0.38 -2.3 655,014 - ABIE53_000596 0.38 -3.3 655,014 - ABIE53_000596 0.38 -0.9 655,058 + ABIE53_000596 0.43 -0.4 655,058 + ABIE53_000596 0.43 -2.4 655,058 + ABIE53_000596 0.43 -1.8 655,058 + ABIE53_000596 0.43 +0.2 655,058 + ABIE53_000596 0.43 -1.6 655,058 + ABIE53_000596 0.43 +2.0 655,059 - ABIE53_000596 0.43 +0.6 655,059 - ABIE53_000596 0.43 +0.7 655,059 - ABIE53_000596 0.43 -1.3 655,176 - ABIE53_000596 0.57 +0.7 655,176 - ABIE53_000596 0.57 -0.9 655,176 - ABIE53_000596 0.57 -2.5 655,275 + ABIE53_000596 0.69 -0.9 655,293 + ABIE53_000596 0.72 -0.6 655,293 + ABIE53_000596 0.72 +0.7 655,293 + ABIE53_000596 0.72 +0.7 655,392 + ABIE53_000596 0.84 +0.0 655,414 + ABIE53_000596 0.86 +0.7 655,533 - +0.4 655,583 + -0.4 655,583 + -0.3 655,583 + -1.7 655,724 + ABIE53_000597 0.25 -3.5 655,724 + ABIE53_000597 0.25 -2.1 655,724 + ABIE53_000597 0.25 +1.7 655,725 - ABIE53_000597 0.25 +0.9 655,725 - ABIE53_000597 0.25 +1.7 655,755 + ABIE53_000597 0.29 -3.4 655,755 + ABIE53_000597 0.29 +0.7 655,755 + ABIE53_000597 0.29 -0.0 655,756 - ABIE53_000597 0.29 +0.7 655,756 - ABIE53_000597 0.29 -1.9 655,757 + ABIE53_000597 0.29 +0.1 655,757 + ABIE53_000597 0.29 +0.7 655,758 - ABIE53_000597 0.29 -0.3 655,823 + ABIE53_000597 0.38 -0.9 655,823 + ABIE53_000597 0.38 -2.3 655,823 + ABIE53_000597 0.38 +0.7 655,824 - ABIE53_000597 0.38 -3.3 655,824 - ABIE53_000597 0.38 +0.7 655,824 - ABIE53_000597 0.38 -2.6 655,824 - ABIE53_000597 0.38 -0.3 655,851 + ABIE53_000597 0.41 -1.3 655,852 - ABIE53_000597 0.41 -1.0 655,852 - ABIE53_000597 0.41 -3.2 655,852 - ABIE53_000597 0.41 -1.6 655,852 - ABIE53_000597 0.41 -0.3 655,853 + ABIE53_000597 0.42 +2.3 655,853 + ABIE53_000597 0.42 -0.7 655,853 + ABIE53_000597 0.42 -0.4 655,853 + ABIE53_000597 0.42 -1.6 655,853 + ABIE53_000597 0.42 -2.6 655,973 + ABIE53_000597 0.57 -2.5 655,973 + ABIE53_000597 0.57 -1.3 655,973 + ABIE53_000597 0.57 -1.1 655,973 + ABIE53_000597 0.57 -0.3 655,973 + ABIE53_000597 0.57 -3.5 655,973 + ABIE53_000597 0.57 -0.9 655,974 - ABIE53_000597 0.57 -1.1 655,974 - ABIE53_000597 0.57 +0.4 655,974 - ABIE53_000597 0.57 -0.9 655,974 - ABIE53_000597 0.57 +0.7 655,974 - ABIE53_000597 0.57 +1.3 655,974 - ABIE53_000597 0.57 +0.7 656,038 + ABIE53_000597 0.66 -1.0 656,038 + ABIE53_000597 0.66 -3.5 656,039 - ABIE53_000597 0.66 -1.4 656,039 - ABIE53_000597 0.66 -1.3 656,136 + ABIE53_000597 0.78 +0.0 656,136 + ABIE53_000597 0.78 -0.6 656,138 + ABIE53_000597 0.78 -0.7 656,138 + ABIE53_000597 0.78 -0.9 656,138 + ABIE53_000597 0.78 +0.2 656,138 + ABIE53_000597 0.78 +0.7 656,138 + ABIE53_000597 0.78 -1.9 656,138 + ABIE53_000597 0.78 +0.1 656,139 - ABIE53_000597 0.79 +1.1 656,139 - ABIE53_000597 0.79 -0.9 656,139 - ABIE53_000597 0.79 +0.7 656,322 + -1.8 656,322 + -0.1 656,322 + +1.2 656,322 + -3.1 656,322 + -0.2 656,322 + -2.0 656,323 - -1.3 656,323 - +2.7 656,323 - +0.4 656,355 + -3.6 656,355 + -0.9 656,412 + ABIE53_000598 0.13 -0.9 656,412 + ABIE53_000598 0.13 +0.7 656,413 - ABIE53_000598 0.13 -3.7 656,454 + ABIE53_000598 0.19 -2.9 656,511 + ABIE53_000598 0.27 -2.5 656,523 + ABIE53_000598 0.29 -0.9 656,523 + ABIE53_000598 0.29 -3.4 656,523 + ABIE53_000598 0.29 -0.3 656,524 - ABIE53_000598 0.29 -2.6 656,524 - ABIE53_000598 0.29 -1.3 656,524 - ABIE53_000598 0.29 -1.3 656,524 - ABIE53_000598 0.29 -0.9 656,586 + ABIE53_000598 0.38 -0.3 656,586 + ABIE53_000598 0.38 +0.7 656,587 - ABIE53_000598 0.38 -3.1 656,664 + ABIE53_000598 0.49 -1.6 656,665 - ABIE53_000598 0.50 -2.1 656,665 - ABIE53_000598 0.50 -5.1 656,665 - ABIE53_000598 0.50 -3.2 656,665 - ABIE53_000598 0.50 -1.3 656,760 + ABIE53_000598 0.63 +0.7 656,761 - ABIE53_000598 0.63 +0.7 656,793 + ABIE53_000598 0.68 +0.7 656,794 - ABIE53_000598 0.68 -3.0 656,794 - ABIE53_000598 0.68 +1.7 656,865 + ABIE53_000598 0.78 -3.5 656,865 + ABIE53_000598 0.78 -1.9 656,976 + -0.9 656,976 + -2.3 656,977 - -0.3 656,977 - -2.5 656,982 + -2.5 656,982 + -2.5 656,982 + -2.5 656,982 + -0.9 656,982 + -0.3 656,982 + +0.7 656,983 - -1.7 656,983 - +0.7 657,077 + -0.7 657,077 + -0.6 657,077 + -3.5 657,077 + -1.6 657,078 - -0.9 657,078 - -0.9 657,078 - -0.3 657,078 - -1.0 657,078 - +1.1 657,078 - -0.3 657,124 + -3.2 657,125 - -1.3 657,164 + +0.7 657,164 + +0.7 657,164 + +0.7 657,164 + -0.5 657,164 + -0.2 657,164 + +0.7 657,164 + -1.6 657,165 - -1.3 657,165 - -0.9 657,165 - -0.3 657,165 - -1.3 657,165 - +0.2 657,165 - -0.4 657,165 - -1.2 657,165 - -2.0 657,165 - -0.5 657,165 - +1.3 657,165 - -0.7 657,275 + ABIE53_000599 0.14 -1.3 657,275 + ABIE53_000599 0.14 -1.3 657,275 + ABIE53_000599 0.14 +0.7 657,275 + ABIE53_000599 0.14 -0.0 657,275 + ABIE53_000599 0.14 +0.7 657,275 + ABIE53_000599 0.14 -1.3 657,276 - ABIE53_000599 0.14 -0.1 657,276 - ABIE53_000599 0.14 -1.9 657,276 - ABIE53_000599 0.14 +0.7 657,276 - ABIE53_000599 0.14 -0.0
Or see this region's nucleotide sequence