Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4489

Experiment: BHIS with Dimethyl Sulfoxide 0.2 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Dimethyl Sulfoxide 0.2 vol%
5,904,667	+		BT4488	0.28	+0.1
5,904,707	+		BT4488	0.33	-1.7
5,904,708	-		BT4488	0.33	+0.0
5,904,721	+		BT4488	0.35	+1.3
5,904,721	+		BT4488	0.35	+0.4
5,904,722	-		BT4488	0.35	+0.0
5,904,822	-		BT4488	0.47	+0.6
5,904,914	+		BT4488	0.58	+0.0
5,904,978	+		BT4488	0.65	-1.9
5,904,979	-		BT4488	0.65	-1.6
5,905,033	+		BT4488	0.72	+0.0
5,905,071	+		BT4488	0.76	-2.3
5,905,214	-				-1.6
5,905,264	+				+1.0
5,905,265	-				-1.0
5,905,265	-				+0.4
5,905,265	-				+0.8
5,905,310	+				-1.0
5,905,310	+				+0.0
5,905,310	+				-0.7
5,905,315	+				-0.4
5,905,380	+				-2.1
5,905,431	+				-1.6
5,905,431	+				+1.0
5,905,433	+				-2.8
5,905,477	-				-3.2
5,905,483	-				-1.0
5,905,591	+				+0.0
5,905,591	+				+0.4
5,905,592	-				+1.6
5,905,603	-				+0.7
5,905,633	-				+0.0
5,905,634	+				-2.2
5,905,636	+				-1.0
5,905,643	+				+0.0
5,905,644	-				-0.9
5,905,644	-				+0.0
5,905,647	+				-1.6
5,905,656	+				-0.7
5,905,669	+				-1.0
5,905,670	-				-0.1
5,905,687	+				-0.4
5,905,727	-				-2.2
5,905,739	-				-2.0
5,905,765	-				-1.6
5,905,765	-				-2.2
5,905,807	+				-1.6
5,905,808	-				+2.3
5,905,808	-				-2.8
5,905,822	+		BT4489	0.10	-1.0
5,905,823	-		BT4489	0.11	+1.6
5,905,828	+		BT4489	0.11	-0.5
5,905,829	-		BT4489	0.11	-0.4
5,905,829	-		BT4489	0.11	+0.3
5,905,863	-		BT4489	0.13	+0.0
5,905,874	+		BT4489	0.14	-1.6
5,905,886	-		BT4489	0.14	-0.4
5,905,889	+		BT4489	0.15	-2.7
5,905,889	+		BT4489	0.15	-1.9
5,905,889	+		BT4489	0.15	-1.6
5,905,950	-		BT4489	0.18	-0.8
5,905,992	+		BT4489	0.21	+0.0
5,906,033	+		BT4489	0.24	+0.3
5,906,033	+		BT4489	0.24	+0.0
5,906,111	+		BT4489	0.29	-1.4
5,906,111	+		BT4489	0.29	-1.8
5,906,137	+		BT4489	0.30	-0.8
5,906,169	-		BT4489	0.32	+0.0
5,906,401	+		BT4489	0.47	-0.3
5,906,456	-		BT4489	0.50	+0.9
5,906,479	-		BT4489	0.52	-2.0
5,906,536	+		BT4489	0.55	-0.6
5,906,536	+		BT4489	0.55	-1.0
5,906,537	-		BT4489	0.55	+1.6
5,906,537	-		BT4489	0.55	+0.0
5,906,546	+		BT4489	0.56	-1.6
5,906,558	-		BT4489	0.56	-1.6
5,906,565	+		BT4489	0.57	+0.1
5,906,566	-		BT4489	0.57	-2.6
5,906,600	-		BT4489	0.59	-0.5
5,906,656	+		BT4489	0.63	-1.0
5,906,699	-		BT4489	0.65	+1.2
5,906,898	-		BT4489	0.78	+0.0
5,906,966	+		BT4489	0.82	-1.0
5,906,966	+		BT4489	0.82	-2.8
5,906,967	-		BT4489	0.82	+0.0
5,906,967	-		BT4489	0.82	+0.4
5,907,030	+		BT4489	0.86	-0.6
5,907,156	-				-2.3
5,907,166	+				+0.0
5,907,276	-				-1.0
5,907,323	+				-0.5
5,907,381	-				+0.0
5,907,401	-		BT4490	0.19	-1.0
5,907,517	-				-1.6
5,907,547	+		BT4490	0.45	+0.6
5,907,548	-		BT4490	0.45	-1.6
5,907,579	+		BT4490	0.50	-2.3
5,907,584	+		BT4490	0.51	-1.1
5,907,641	+		BT4490	0.61	-1.0
5,907,732	+		BT4490	0.77	+0.3
5,907,881	-				-1.0
5,907,897	+				+1.6
5,907,900	-				+1.3
5,907,914	+				-2.3
5,907,915	-				+0.0
5,907,932	+		BT4491	0.14	-3.0
5,907,944	+		BT4491	0.17	-0.5
5,907,945	-		BT4491	0.17	+0.0
5,907,970	-		BT4491	0.24	-0.5
5,907,973	+		BT4491	0.24	+0.0
5,908,018	-		BT4491	0.36	+0.0
5,908,041	-		BT4491	0.42	-1.5
5,908,107	+		BT4491	0.59	-0.6
5,908,107	+		BT4491	0.59	-2.6
5,908,107	+		BT4491	0.59	+0.5
5,908,108	-		BT4491	0.59	+0.0
5,908,113	+		BT4491	0.60	-1.6
5,908,113	+		BT4491	0.60	-2.8
5,908,114	-		BT4491	0.61	+0.0
5,908,114	-		BT4491	0.61	-1.2
5,908,155	+		BT4491	0.71	-1.2
5,908,194	-		BT4491	0.81	-2.6
5,908,198	-		BT4491	0.82	-2.0
5,908,219	-		BT4491	0.88	-0.6