Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4225

Experiment: BHIS with Dimethyl Sulfoxide 0.2 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Dimethyl Sulfoxide 0.2 vol%
5,562,915	-		BT4224	0.69	-0.4
5,562,948	+		BT4224	0.70	-1.0
5,562,970	+		BT4224	0.71	-0.6
5,563,013	+		BT4224	0.72	-2.1
5,563,067	+		BT4224	0.74	-2.3
5,563,067	+		BT4224	0.74	-0.5
5,563,068	-		BT4224	0.74	-1.4
5,563,090	+		BT4224	0.75	-1.2
5,563,091	-		BT4224	0.75	-0.0
5,563,154	+				-0.0
5,563,166	+		BT4224	0.77	-0.8
5,563,169	+		BT4224	0.78	-0.7
5,563,170	-		BT4224	0.78	-0.7
5,563,233	-		BT4224	0.80	-2.3
5,563,268	+		BT4224	0.81	-0.8
5,563,268	+		BT4224	0.81	-0.6
5,563,270	+		BT4224	0.81	-0.8
5,563,270	+		BT4224	0.81	-2.6
5,563,270	+		BT4224	0.81	-3.3
5,563,364	+		BT4224	0.84	-0.8
5,563,365	-		BT4224	0.84	-3.2
5,563,413	+		BT4224	0.86	-1.0
5,563,433	+		BT4224	0.87	-2.0
5,563,449	-		BT4224	0.87	-0.5
5,563,464	+		BT4224	0.88	-1.7
5,563,465	-		BT4224	0.88	-0.6
5,563,533	-				-1.9
5,563,534	+				-0.0
5,563,534	+				-1.3
5,563,534	+				-2.3
5,563,534	+				-1.2
5,563,537	+				-1.8
5,563,591	+				-0.2
5,563,660	-				-1.1
5,563,684	-				-1.1
5,563,733	+				-3.0
5,563,850	+				-1.0
5,563,885	+				-1.0
5,563,920	+				-1.2
5,563,929	-				-1.6
5,563,938	+		BT4225	0.10	-1.2
5,563,943	-		BT4225	0.11	-0.0
5,563,949	-		BT4225	0.11	-2.0
5,563,994	+		BT4225	0.15	-0.6
5,563,994	+		BT4225	0.15	-2.5
5,564,061	+		BT4225	0.22	-1.6
5,564,062	-		BT4225	0.22	-2.3
5,564,075	+		BT4225	0.23	-0.9
5,564,088	-		BT4225	0.24	-1.0
5,564,089	+		BT4225	0.25	-3.3
5,564,096	+		BT4225	0.25	-2.3
5,564,242	-		BT4225	0.39	-0.6
5,564,273	+		BT4225	0.42	-1.7
5,564,289	+		BT4225	0.44	-2.7
5,564,321	+		BT4225	0.47	-1.0
5,564,321	+		BT4225	0.47	-2.0
5,564,334	-		BT4225	0.48	-2.2
5,564,336	+		BT4225	0.48	-2.6
5,564,338	+		BT4225	0.48	+1.6
5,564,363	+		BT4225	0.51	-1.2
5,564,363	+		BT4225	0.51	-2.0
5,564,363	+		BT4225	0.51	-1.0
5,564,388	-		BT4225	0.53	-2.6
5,564,447	+		BT4225	0.59	-2.3
5,564,535	-		BT4225	0.67	-2.8
5,564,535	-		BT4225	0.67	-3.0
5,564,536	+		BT4225	0.67	-0.0
5,564,608	-		BT4225	0.74	-0.0
5,564,657	+		BT4225	0.79	-1.8
5,564,698	-		BT4225	0.83	-0.0
5,564,698	-		BT4225	0.83	-0.6
5,564,754	+		BT4225	0.88	-2.8
5,564,754	+		BT4225	0.88	-1.6
5,564,755	-		BT4225	0.88	-0.0
5,564,835	+				-2.6
5,564,840	+				-0.0
5,564,841	-				-0.5
5,564,844	+				-0.7
5,564,854	+				-1.0
5,564,854	+				-1.2
5,565,005	-		BT4226	0.11	-0.0
5,565,111	+		BT4226	0.20	-0.0
5,565,112	-		BT4226	0.20	-0.8
5,565,251	+		BT4226	0.33	-0.6
5,565,273	+		BT4226	0.35	-1.2
5,565,296	+		BT4226	0.37	-0.8
5,565,320	+		BT4226	0.40	-1.0
5,565,411	+		BT4226	0.48	-0.0
5,565,499	+		BT4226	0.56	-1.0
5,565,500	-		BT4226	0.56	-2.0
5,565,500	-		BT4226	0.56	-2.8
5,565,511	+		BT4226	0.57	-0.0
5,565,514	+		BT4226	0.58	-1.0
5,565,514	+		BT4226	0.58	-0.6
5,565,515	-		BT4226	0.58	-1.3
5,565,518	+		BT4226	0.58	-2.6
5,565,553	-		BT4226	0.61	+0.5
5,565,610	+		BT4226	0.66	-2.3
5,565,610	+		BT4226	0.66	-1.0
5,565,640	+		BT4226	0.69	-0.0
5,565,679	+		BT4226	0.73	-1.2
5,565,680	-		BT4226	0.73	-1.0
5,565,680	-		BT4226	0.73	-0.0
5,565,685	+		BT4226	0.73	-2.0
5,565,686	-		BT4226	0.73	-1.1
5,565,753	+		BT4226	0.80	+1.0
5,565,753	+		BT4226	0.80	-0.5
5,565,777	+		BT4226	0.82	-0.0
5,565,803	-		BT4226	0.84	+1.6
5,565,819	+		BT4226	0.86	-2.3
5,565,819	+		BT4226	0.86	-2.3
5,565,830	+		BT4226	0.87	-0.0
5,565,849	-		BT4226	0.89	-1.0
5,565,872	+				-1.2