Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3635

Experiment: BHIS with Dimethyl Sulfoxide 0.2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT3634 and BT3635 are separated by 32 nucleotidesBT3635 and BT3636 are separated by 212 nucleotides BT3634: BT3634 - transposase (NCBI ptt file), at 4,709,875 to 4,710,768 BT3634 BT3635: BT3635 - hypothetical protein (NCBI ptt file), at 4,710,801 to 4,711,148 BT3635 BT3636: BT3636 - aspartate-semialdehyde dehydrogenase (NCBI ptt file), at 4,711,361 to 4,712,368 BT3636 Position (kb) 4710 4711 4712Strain fitness (log2 ratio) -3 -2 -1 0 1at 4711.188 kb on + strandat 4711.188 kb on + strandat 4711.244 kb on + strandat 4711.340 kb on - strandat 4711.350 kb on - strandat 4711.353 kb on + strandat 4711.358 kb on - strandat 4711.358 kb on - strandat 4711.362 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Dimethyl Sulfoxide 0.2 vol%
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4,711,188 + +0.7
4,711,188 + -2.1
4,711,244 + +0.9
4,711,340 - -0.4
4,711,350 - +1.5
4,711,353 + -2.9
4,711,358 - +0.9
4,711,358 - +0.9
4,711,362 + -0.1

Or see this region's nucleotide sequence