Experiment: Grazed flask 8 outgrowth 150uE (no effect)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt alaS and rps12 are separated by 191 nucleotides rps12 and rne are separated by 349 nucleotides
Synpcc7942_0876: alaS - alanyl-tRNA synthetase, at 877,976 to 880,675
alaS
Synpcc7942_0877: rps12 - Elongator protein 3/MiaB/NifB, at 880,867 to 883,485
rps12
Synpcc7942_0878: rne - ribonuclease, Rne/Rng family, at 883,835 to 886,261
rne
Position (kb) 880
881
882
883
884 Strain fitness (log2 ratio) -2
-1
0
1 at 880.651 kb on + strand at 880.659 kb on - strand at 880.678 kb on - strand at 880.684 kb on - strand at 880.710 kb on + strand at 880.751 kb on + strand at 880.751 kb on + strand at 880.751 kb on + strand at 880.751 kb on + strand at 880.759 kb on - strand at 880.776 kb on + strand at 880.803 kb on + strand at 880.804 kb on - strand at 880.813 kb on + strand at 880.813 kb on + strand at 880.816 kb on - strand at 880.816 kb on - strand at 880.823 kb on + strand at 880.835 kb on + strand at 880.869 kb on + strand at 880.877 kb on - strand at 880.905 kb on + strand at 880.928 kb on + strand at 880.945 kb on + strand at 880.953 kb on + strand at 880.955 kb on - strand at 880.981 kb on + strand at 880.999 kb on - strand at 880.999 kb on - strand at 881.033 kb on - strand at 881.037 kb on + strand at 881.046 kb on - strand at 881.049 kb on + strand at 881.174 kb on - strand, within rps12 at 881.191 kb on + strand, within rps12 at 881.241 kb on + strand, within rps12 at 881.249 kb on - strand, within rps12 at 881.259 kb on - strand, within rps12 at 881.259 kb on - strand, within rps12 at 881.259 kb on - strand, within rps12 at 881.288 kb on - strand, within rps12 at 881.290 kb on + strand, within rps12 at 881.298 kb on - strand, within rps12 at 881.323 kb on + strand, within rps12 at 881.349 kb on + strand, within rps12 at 881.420 kb on + strand, within rps12 at 881.443 kb on + strand, within rps12 at 881.452 kb on - strand, within rps12 at 881.458 kb on + strand, within rps12 at 881.458 kb on + strand, within rps12 at 881.466 kb on - strand, within rps12 at 881.483 kb on + strand, within rps12 at 881.489 kb on - strand, within rps12 at 881.489 kb on - strand, within rps12 at 881.533 kb on + strand, within rps12 at 881.544 kb on - strand, within rps12 at 881.554 kb on - strand, within rps12 at 881.617 kb on - strand, within rps12 at 881.617 kb on - strand, within rps12 at 881.630 kb on - strand, within rps12 at 881.640 kb on - strand, within rps12 at 881.674 kb on + strand, within rps12 at 881.677 kb on - strand, within rps12 at 881.682 kb on - strand, within rps12 at 881.695 kb on - strand, within rps12 at 881.701 kb on + strand, within rps12 at 881.721 kb on + strand, within rps12 at 881.756 kb on + strand, within rps12 at 881.795 kb on - strand, within rps12 at 881.801 kb on + strand, within rps12 at 881.801 kb on + strand, within rps12 at 881.801 kb on + strand, within rps12 at 881.801 kb on + strand, within rps12 at 881.801 kb on + strand, within rps12 at 881.801 kb on + strand, within rps12 at 881.801 kb on + strand, within rps12 at 881.808 kb on - strand, within rps12 at 881.808 kb on - strand, within rps12 at 881.809 kb on - strand, within rps12 at 881.809 kb on - strand, within rps12 at 881.809 kb on - strand, within rps12 at 881.824 kb on + strand, within rps12 at 881.892 kb on - strand, within rps12 at 881.914 kb on + strand, within rps12 at 881.976 kb on + strand, within rps12 at 881.984 kb on + strand, within rps12 at 881.984 kb on + strand, within rps12 at 881.984 kb on + strand, within rps12 at 881.984 kb on + strand, within rps12 at 881.984 kb on + strand, within rps12 at 881.984 kb on + strand, within rps12 at 881.984 kb on + strand, within rps12 at 881.984 kb on + strand, within rps12 at 881.984 kb on + strand, within rps12 at 881.984 kb on + strand, within rps12 at 881.992 kb on - strand, within rps12 at 881.992 kb on - strand at 881.992 kb on - strand, within rps12 at 881.992 kb on - strand, within rps12 at 881.992 kb on - strand, within rps12 at 881.992 kb on - strand, within rps12 at 881.992 kb on - strand, within rps12 at 882.008 kb on + strand, within rps12 at 882.008 kb on + strand, within rps12 at 882.016 kb on - strand, within rps12 at 882.016 kb on - strand, within rps12 at 882.018 kb on + strand, within rps12 at 882.021 kb on - strand, within rps12 at 882.026 kb on - strand, within rps12 at 882.026 kb on - strand, within rps12 at 882.028 kb on - strand, within rps12 at 882.031 kb on + strand, within rps12 at 882.050 kb on - strand, within rps12 at 882.058 kb on + strand, within rps12 at 882.058 kb on + strand, within rps12 at 882.075 kb on + strand, within rps12 at 882.075 kb on + strand, within rps12 at 882.077 kb on - strand, within rps12 at 882.105 kb on + strand, within rps12 at 882.124 kb on + strand, within rps12 at 882.124 kb on + strand, within rps12 at 882.124 kb on + strand, within rps12 at 882.124 kb on + strand, within rps12 at 882.132 kb on - strand, within rps12 at 882.132 kb on - strand, within rps12 at 882.191 kb on + strand, within rps12 at 882.199 kb on - strand, within rps12 at 882.199 kb on - strand, within rps12 at 882.235 kb on + strand, within rps12 at 882.235 kb on + strand, within rps12 at 882.300 kb on + strand, within rps12 at 882.311 kb on + strand, within rps12 at 882.327 kb on - strand, within rps12 at 882.340 kb on - strand, within rps12 at 882.363 kb on + strand, within rps12 at 882.373 kb on - strand, within rps12 at 882.384 kb on + strand at 882.384 kb on + strand, within rps12 at 882.460 kb on + strand, within rps12 at 882.550 kb on + strand, within rps12 at 882.551 kb on - strand, within rps12 at 882.558 kb on - strand, within rps12 at 882.591 kb on - strand, within rps12 at 882.596 kb on - strand, within rps12 at 882.596 kb on - strand, within rps12 at 882.626 kb on + strand, within rps12 at 882.643 kb on - strand, within rps12 at 882.682 kb on + strand, within rps12 at 882.682 kb on + strand, within rps12 at 882.688 kb on - strand, within rps12 at 882.689 kb on + strand, within rps12 at 882.690 kb on - strand, within rps12 at 882.770 kb on - strand, within rps12 at 882.846 kb on - strand at 882.859 kb on - strand, within rps12 at 882.859 kb on - strand, within rps12 at 882.859 kb on - strand, within rps12 at 882.948 kb on + strand, within rps12 at 883.003 kb on - strand, within rps12 at 883.048 kb on + strand, within rps12 at 883.103 kb on - strand, within rps12 at 883.115 kb on + strand, within rps12 at 883.117 kb on + strand, within rps12 at 883.117 kb on + strand, within rps12 at 883.117 kb on + strand, within rps12 at 883.117 kb on + strand, within rps12 at 883.122 kb on + strand, within rps12 at 883.122 kb on + strand, within rps12 at 883.135 kb on + strand, within rps12 at 883.135 kb on + strand, within rps12 at 883.135 kb on + strand, within rps12 at 883.135 kb on + strand, within rps12 at 883.135 kb on + strand, within rps12 at 883.143 kb on + strand, within rps12 at 883.143 kb on - strand, within rps12 at 883.143 kb on - strand, within rps12 at 883.151 kb on - strand, within rps12 at 883.203 kb on - strand, within rps12 at 883.211 kb on + strand, within rps12 at 883.212 kb on + strand, within rps12 at 883.225 kb on - strand at 883.225 kb on - strand at 883.225 kb on - strand at 883.225 kb on - strand at 883.225 kb on - strand at 883.229 kb on + strand at 883.275 kb on + strand at 883.275 kb on + strand at 883.280 kb on - strand at 883.280 kb on - strand at 883.284 kb on + strand at 883.284 kb on + strand at 883.284 kb on + strand at 883.286 kb on + strand at 883.287 kb on - strand at 883.287 kb on - strand at 883.287 kb on - strand at 883.289 kb on + strand at 883.292 kb on - strand at 883.297 kb on - strand at 883.297 kb on - strand at 883.304 kb on - strand at 883.304 kb on - strand at 883.308 kb on + strand at 883.389 kb on + strand at 883.399 kb on + strand at 883.432 kb on + strand at 883.505 kb on - strand at 883.630 kb on - strand at 883.806 kb on - strand at 883.898 kb on - strand at 883.935 kb on - strand at 883.996 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Grazed flask 8 outgrowth 150uE (no effect) remove 880,651 + -0.2 880,659 - -0.4 880,678 - -0.1 880,684 - +0.3 880,710 + +0.4 880,751 + -0.5 880,751 + -0.3 880,751 + -1.2 880,751 + +0.6 880,759 - -0.6 880,776 + +0.0 880,803 + +0.1 880,804 - +0.4 880,813 + -1.3 880,813 + -0.2 880,816 - -1.0 880,816 - -0.1 880,823 + +1.6 880,835 + +0.1 880,869 + -1.3 880,877 - -0.4 880,905 + +0.4 880,928 + -0.4 880,945 + -0.6 880,953 + -1.4 880,955 - +0.2 880,981 + -0.1 880,999 - +0.2 880,999 - +0.1 881,033 - +0.3 881,037 + -0.5 881,046 - -0.2 881,049 + -1.0 881,174 - rps12 Synpcc7942_0877 0.12 +0.9 881,191 + rps12 Synpcc7942_0877 0.12 +0.5 881,241 + rps12 Synpcc7942_0877 0.14 +1.1 881,249 - rps12 Synpcc7942_0877 0.15 -0.4 881,259 - rps12 Synpcc7942_0877 0.15 -0.5 881,259 - rps12 Synpcc7942_0877 0.15 -0.0 881,259 - rps12 Synpcc7942_0877 0.15 -1.9 881,288 - rps12 Synpcc7942_0877 0.16 -0.7 881,290 + rps12 Synpcc7942_0877 0.16 -0.6 881,298 - rps12 Synpcc7942_0877 0.16 +1.1 881,323 + rps12 Synpcc7942_0877 0.17 +0.3 881,349 + rps12 Synpcc7942_0877 0.18 -0.3 881,420 + rps12 Synpcc7942_0877 0.21 -0.5 881,443 + rps12 Synpcc7942_0877 0.22 -0.4 881,452 - rps12 Synpcc7942_0877 0.22 -0.1 881,458 + rps12 Synpcc7942_0877 0.23 +1.1 881,458 + rps12 Synpcc7942_0877 0.23 +0.2 881,466 - rps12 Synpcc7942_0877 0.23 -0.4 881,483 + rps12 Synpcc7942_0877 0.24 -0.1 881,489 - rps12 Synpcc7942_0877 0.24 +1.1 881,489 - rps12 Synpcc7942_0877 0.24 +0.1 881,533 + rps12 Synpcc7942_0877 0.25 -0.3 881,544 - rps12 Synpcc7942_0877 0.26 -0.5 881,554 - rps12 Synpcc7942_0877 0.26 -0.6 881,617 - rps12 Synpcc7942_0877 0.29 -0.5 881,617 - rps12 Synpcc7942_0877 0.29 -1.9 881,630 - rps12 Synpcc7942_0877 0.29 -0.4 881,640 - rps12 Synpcc7942_0877 0.30 -0.0 881,674 + rps12 Synpcc7942_0877 0.31 +1.0 881,677 - rps12 Synpcc7942_0877 0.31 +1.1 881,682 - rps12 Synpcc7942_0877 0.31 -0.3 881,695 - rps12 Synpcc7942_0877 0.32 -0.4 881,701 + rps12 Synpcc7942_0877 0.32 -1.6 881,721 + rps12 Synpcc7942_0877 0.33 -0.0 881,756 + rps12 Synpcc7942_0877 0.34 -0.2 881,795 - rps12 Synpcc7942_0877 0.35 -0.0 881,801 + rps12 Synpcc7942_0877 0.36 +0.6 881,801 + rps12 Synpcc7942_0877 0.36 +0.4 881,801 + rps12 Synpcc7942_0877 0.36 -0.1 881,801 + rps12 Synpcc7942_0877 0.36 -1.1 881,801 + rps12 Synpcc7942_0877 0.36 +0.3 881,801 + rps12 Synpcc7942_0877 0.36 +0.9 881,801 + rps12 Synpcc7942_0877 0.36 -1.0 881,808 - rps12 Synpcc7942_0877 0.36 +0.4 881,808 - rps12 Synpcc7942_0877 0.36 -0.2 881,809 - rps12 Synpcc7942_0877 0.36 +0.1 881,809 - rps12 Synpcc7942_0877 0.36 +0.0 881,809 - rps12 Synpcc7942_0877 0.36 -0.6 881,824 + rps12 Synpcc7942_0877 0.37 +0.1 881,892 - rps12 Synpcc7942_0877 0.39 -0.3 881,914 + rps12 Synpcc7942_0877 0.40 +0.0 881,976 + rps12 Synpcc7942_0877 0.42 -0.3 881,984 + rps12 Synpcc7942_0877 0.43 -0.1 881,984 + rps12 Synpcc7942_0877 0.43 -0.8 881,984 + rps12 Synpcc7942_0877 0.43 +0.1 881,984 + rps12 Synpcc7942_0877 0.43 -0.3 881,984 + rps12 Synpcc7942_0877 0.43 +0.7 881,984 + rps12 Synpcc7942_0877 0.43 +0.2 881,984 + rps12 Synpcc7942_0877 0.43 +0.1 881,984 + rps12 Synpcc7942_0877 0.43 +0.0 881,984 + rps12 Synpcc7942_0877 0.43 +0.7 881,984 + rps12 Synpcc7942_0877 0.43 +0.1 881,992 - rps12 Synpcc7942_0877 0.43 -0.4 881,992 - -0.1 881,992 - rps12 Synpcc7942_0877 0.43 -0.7 881,992 - rps12 Synpcc7942_0877 0.43 +0.3 881,992 - rps12 Synpcc7942_0877 0.43 -0.3 881,992 - rps12 Synpcc7942_0877 0.43 +0.2 881,992 - rps12 Synpcc7942_0877 0.43 -0.3 882,008 + rps12 Synpcc7942_0877 0.44 -1.5 882,008 + rps12 Synpcc7942_0877 0.44 -0.1 882,016 - rps12 Synpcc7942_0877 0.44 -0.5 882,016 - rps12 Synpcc7942_0877 0.44 -0.4 882,018 + rps12 Synpcc7942_0877 0.44 -0.7 882,021 - rps12 Synpcc7942_0877 0.44 -0.4 882,026 - rps12 Synpcc7942_0877 0.44 -2.2 882,026 - rps12 Synpcc7942_0877 0.44 -0.7 882,028 - rps12 Synpcc7942_0877 0.44 +1.2 882,031 + rps12 Synpcc7942_0877 0.44 -0.2 882,050 - rps12 Synpcc7942_0877 0.45 +0.7 882,058 + rps12 Synpcc7942_0877 0.45 -0.0 882,058 + rps12 Synpcc7942_0877 0.45 +0.0 882,075 + rps12 Synpcc7942_0877 0.46 -1.4 882,075 + rps12 Synpcc7942_0877 0.46 +0.6 882,077 - rps12 Synpcc7942_0877 0.46 -0.1 882,105 + rps12 Synpcc7942_0877 0.47 +0.2 882,124 + rps12 Synpcc7942_0877 0.48 +0.9 882,124 + rps12 Synpcc7942_0877 0.48 -0.2 882,124 + rps12 Synpcc7942_0877 0.48 +1.1 882,124 + rps12 Synpcc7942_0877 0.48 -1.3 882,132 - rps12 Synpcc7942_0877 0.48 -0.0 882,132 - rps12 Synpcc7942_0877 0.48 -0.1 882,191 + rps12 Synpcc7942_0877 0.51 -1.5 882,199 - rps12 Synpcc7942_0877 0.51 +0.6 882,199 - rps12 Synpcc7942_0877 0.51 -1.1 882,235 + rps12 Synpcc7942_0877 0.52 -0.9 882,235 + rps12 Synpcc7942_0877 0.52 -1.4 882,300 + rps12 Synpcc7942_0877 0.55 +0.6 882,311 + rps12 Synpcc7942_0877 0.55 +0.6 882,327 - rps12 Synpcc7942_0877 0.56 -0.5 882,340 - rps12 Synpcc7942_0877 0.56 -0.8 882,363 + rps12 Synpcc7942_0877 0.57 +0.1 882,373 - rps12 Synpcc7942_0877 0.58 +0.5 882,384 + -0.4 882,384 + rps12 Synpcc7942_0877 0.58 +0.9 882,460 + rps12 Synpcc7942_0877 0.61 -0.2 882,550 + rps12 Synpcc7942_0877 0.64 -1.0 882,551 - rps12 Synpcc7942_0877 0.64 -0.3 882,558 - rps12 Synpcc7942_0877 0.65 -0.0 882,591 - rps12 Synpcc7942_0877 0.66 +0.7 882,596 - rps12 Synpcc7942_0877 0.66 +0.1 882,596 - rps12 Synpcc7942_0877 0.66 +0.3 882,626 + rps12 Synpcc7942_0877 0.67 -0.3 882,643 - rps12 Synpcc7942_0877 0.68 +0.2 882,682 + rps12 Synpcc7942_0877 0.69 -0.9 882,682 + rps12 Synpcc7942_0877 0.69 -1.2 882,688 - rps12 Synpcc7942_0877 0.70 +0.0 882,689 + rps12 Synpcc7942_0877 0.70 +0.3 882,690 - rps12 Synpcc7942_0877 0.70 -0.9 882,770 - rps12 Synpcc7942_0877 0.73 +0.5 882,846 - -0.9 882,859 - rps12 Synpcc7942_0877 0.76 +0.3 882,859 - rps12 Synpcc7942_0877 0.76 +0.1 882,859 - rps12 Synpcc7942_0877 0.76 -0.8 882,948 + rps12 Synpcc7942_0877 0.79 +0.2 883,003 - rps12 Synpcc7942_0877 0.82 +0.9 883,048 + rps12 Synpcc7942_0877 0.83 +0.2 883,103 - rps12 Synpcc7942_0877 0.85 -1.2 883,115 + rps12 Synpcc7942_0877 0.86 +0.0 883,117 + rps12 Synpcc7942_0877 0.86 +0.1 883,117 + rps12 Synpcc7942_0877 0.86 +0.1 883,117 + rps12 Synpcc7942_0877 0.86 -0.1 883,117 + rps12 Synpcc7942_0877 0.86 -0.0 883,122 + rps12 Synpcc7942_0877 0.86 -0.2 883,122 + rps12 Synpcc7942_0877 0.86 -0.6 883,135 + rps12 Synpcc7942_0877 0.87 +0.4 883,135 + rps12 Synpcc7942_0877 0.87 -0.4 883,135 + rps12 Synpcc7942_0877 0.87 -0.1 883,135 + rps12 Synpcc7942_0877 0.87 -1.9 883,135 + rps12 Synpcc7942_0877 0.87 -0.1 883,143 + rps12 Synpcc7942_0877 0.87 -0.5 883,143 - rps12 Synpcc7942_0877 0.87 -0.3 883,143 - rps12 Synpcc7942_0877 0.87 -0.0 883,151 - rps12 Synpcc7942_0877 0.87 +0.4 883,203 - rps12 Synpcc7942_0877 0.89 -1.2 883,211 + rps12 Synpcc7942_0877 0.89 +0.1 883,212 + rps12 Synpcc7942_0877 0.90 +0.5 883,225 - +0.6 883,225 - -0.7 883,225 - -2.1 883,225 - -1.0 883,225 - +0.1 883,229 + +0.0 883,275 + -0.5 883,275 + +0.3 883,280 - -0.9 883,280 - +0.9 883,284 + -0.6 883,284 + +0.1 883,284 + -0.7 883,286 + -0.9 883,287 - +0.1 883,287 - +0.5 883,287 - +0.3 883,289 + +0.1 883,292 - -0.8 883,297 - -0.8 883,297 - -0.8 883,304 - -1.4 883,304 - -0.3 883,308 + +0.3 883,389 + +0.9 883,399 + +1.0 883,432 + +1.7 883,505 - +0.5 883,630 - -0.9 883,806 - -1.1 883,898 - -0.3 883,935 - -1.6 883,996 - -2.3
Or see this region's nucleotide sequence