Experiment: Grazed flask 8 outgrowth 150uE (no effect)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt crtE and folD are separated by 42 nucleotides folD and Synpcc7942_0778 are separated by 35 nucleotides Synpcc7942_0778 and Synpcc7942_0779 are separated by 92 nucleotides
Synpcc7942_0776: crtE - farnesyl-diphosphate synthase, at 767,721 to 768,626
crtE
Synpcc7942_0777: folD - Methenyltetrahydrofolate cyclohydrolase, at 768,669 to 769,538
folD
Synpcc7942_0778: Synpcc7942_0778 - hypothetical protein, at 769,574 to 770,038
_0778
Synpcc7942_0779: Synpcc7942_0779 - metal dependent phosphohydrolase, at 770,131 to 772,593
_0779
Position (kb) 769
770
771 Strain fitness (log2 ratio) -2
-1
0
1
2 at 769.541 kb on + strand at 769.549 kb on - strand at 769.594 kb on - strand at 770.006 kb on + strand at 770.006 kb on + strand at 770.006 kb on + strand at 770.020 kb on + strand at 770.032 kb on + strand at 770.032 kb on + strand at 770.032 kb on + strand at 770.038 kb on + strand at 770.040 kb on - strand at 770.040 kb on - strand at 770.040 kb on - strand at 770.040 kb on - strand at 770.040 kb on - strand at 770.043 kb on + strand at 770.051 kb on + strand at 770.051 kb on - strand at 770.051 kb on - strand at 770.059 kb on - strand at 770.074 kb on - strand at 770.077 kb on + strand at 770.077 kb on + strand at 770.085 kb on - strand at 770.087 kb on - strand at 770.092 kb on + strand at 770.110 kb on - strand at 770.126 kb on + strand at 770.126 kb on + strand at 770.134 kb on - strand at 770.134 kb on - strand at 770.134 kb on - strand at 770.148 kb on + strand at 770.156 kb on + strand at 770.190 kb on - strand at 770.231 kb on - strand at 770.289 kb on - strand at 770.289 kb on - strand at 770.346 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Grazed flask 8 outgrowth 150uE (no effect) remove 769,541 + +0.5 769,549 - +0.0 769,594 - +0.1 770,006 + -0.6 770,006 + -1.7 770,006 + -0.7 770,020 + -0.6 770,032 + -0.3 770,032 + +1.1 770,032 + +0.3 770,038 + +0.7 770,040 - -0.4 770,040 - +2.3 770,040 - +0.5 770,040 - +0.2 770,040 - +0.1 770,043 + -0.5 770,051 + -0.0 770,051 - +0.1 770,051 - -0.4 770,059 - -0.9 770,074 - -1.6 770,077 + +0.4 770,077 + +0.3 770,085 - +0.2 770,087 - +0.3 770,092 + +1.0 770,110 - -2.0 770,126 + +0.5 770,126 + +0.7 770,134 - +0.4 770,134 - -0.9 770,134 - -0.3 770,148 + +0.2 770,156 + +0.3 770,190 - +1.1 770,231 - -0.7 770,289 - +0.6 770,289 - -0.1 770,346 - +0.6
Or see this region's nucleotide sequence