Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_006431

Experiment: Laminarin 10 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Laminarin 10 g/L (C)
2,809,510	-				+1.0
2,809,510	-				+0.4
2,809,510	-				-2.3
2,809,510	-				+1.0
2,809,510	-				+1.7
2,809,514	+				+1.0
2,809,573	-				+1.0
2,809,573	-				-0.0
2,809,573	-				+2.0
2,809,630	+		ABIE53_006430	0.10	+2.0
2,809,630	+		ABIE53_006430	0.10	-0.0
2,809,631	-		ABIE53_006430	0.11	-0.7
2,809,659	+		ABIE53_006430	0.14	-0.5
2,809,659	+		ABIE53_006430	0.14	+0.3
2,809,659	+		ABIE53_006430	0.14	-0.0
2,809,659	+		ABIE53_006430	0.14	-1.0
2,809,659	+		ABIE53_006430	0.14	+1.0
2,809,660	-		ABIE53_006430	0.14	-0.3
2,809,710	+		ABIE53_006430	0.20	+2.6
2,809,710	+		ABIE53_006430	0.20	-0.5
2,809,710	+		ABIE53_006430	0.20	-0.4
2,809,711	-		ABIE53_006430	0.20	+1.0
2,809,711	-		ABIE53_006430	0.20	-1.7
2,809,711	-		ABIE53_006430	0.20	-1.7
2,809,711	-		ABIE53_006430	0.20	-2.0
2,809,711	-		ABIE53_006430	0.20	-1.4
2,809,711	-		ABIE53_006430	0.20	-0.7
2,809,714	-		ABIE53_006430	0.21	+1.7
2,809,714	-		ABIE53_006430	0.21	+0.8
2,809,714	-		ABIE53_006430	0.21	+0.1
2,809,714	-		ABIE53_006430	0.21	-2.9
2,809,831	+		ABIE53_006430	0.35	-0.0
2,809,831	+		ABIE53_006430	0.35	+0.5
2,809,831	+		ABIE53_006430	0.35	+1.6
2,809,831	+		ABIE53_006430	0.35	-0.9
2,809,832	-		ABIE53_006430	0.35	+1.0
2,809,894	-		ABIE53_006430	0.43	+0.7
2,809,998	+		ABIE53_006430	0.55	+1.0
2,809,998	+		ABIE53_006430	0.55	-1.4
2,809,999	-		ABIE53_006430	0.55	-0.1
2,810,000	+		ABIE53_006430	0.56	-0.8
2,810,000	+		ABIE53_006430	0.56	-1.9
2,810,000	+		ABIE53_006430	0.56	-0.0
2,810,000	+		ABIE53_006430	0.56	+0.5
2,810,025	+		ABIE53_006430	0.59	-0.0
2,810,025	+		ABIE53_006430	0.59	-0.7
2,810,025	+		ABIE53_006430	0.59	-0.1
2,810,025	+		ABIE53_006430	0.59	+0.2
2,810,025	+		ABIE53_006430	0.59	+0.5
2,810,026	-		ABIE53_006430	0.59	+0.4
2,810,076	+		ABIE53_006430	0.65	+2.0
2,810,077	-		ABIE53_006430	0.65	-1.3
2,810,077	-		ABIE53_006430	0.65	-2.9
2,810,118	+		ABIE53_006430	0.70	+2.0
2,810,148	+		ABIE53_006430	0.74	-0.3
2,810,148	+		ABIE53_006430	0.74	+0.3
2,810,149	-		ABIE53_006430	0.74	-1.2
2,810,149	-		ABIE53_006430	0.74	-0.0
2,810,149	-		ABIE53_006430	0.74	-0.0
2,810,149	-		ABIE53_006430	0.74	+1.3
2,810,151	-		ABIE53_006430	0.74	-0.9
2,810,151	-		ABIE53_006430	0.74	-3.0
2,810,151	-		ABIE53_006430	0.74	-1.4
2,810,416	+				-0.0
2,810,416	+				+1.0
2,810,416	+				+1.0
2,810,416	+				+0.5
2,810,416	+				-2.6
2,810,417	-				+1.3
2,810,417	-				-1.5
2,810,417	-				-0.6
2,810,544	+		ABIE53_006431	0.16	-1.3
2,810,544	+		ABIE53_006431	0.16	+1.0
2,810,544	+		ABIE53_006431	0.16	-1.1
2,810,545	-		ABIE53_006431	0.16	-0.8
2,810,545	-		ABIE53_006431	0.16	-0.0
2,810,545	-		ABIE53_006431	0.16	-0.3
2,810,545	-		ABIE53_006431	0.16	-1.3
2,810,555	+		ABIE53_006431	0.17	-0.0
2,810,563	+		ABIE53_006431	0.18	-0.9
2,810,564	-		ABIE53_006431	0.18	+0.7
2,810,564	-		ABIE53_006431	0.18	-1.1
2,810,611	+		ABIE53_006431	0.23	+2.2
2,810,611	+		ABIE53_006431	0.23	-0.6
2,810,611	+		ABIE53_006431	0.23	-0.5
2,810,612	-		ABIE53_006431	0.23	-1.0
2,810,612	-		ABIE53_006431	0.23	+0.4
2,810,612	-		ABIE53_006431	0.23	-0.0
2,810,635	+		ABIE53_006431	0.26	-0.4
2,810,635	+		ABIE53_006431	0.26	+0.4
2,810,635	+		ABIE53_006431	0.26	-0.0
2,810,635	+		ABIE53_006431	0.26	-0.0
2,810,635	+		ABIE53_006431	0.26	-0.0
2,810,635	+		ABIE53_006431	0.26	-1.3
2,810,635	+		ABIE53_006431	0.26	-0.0
2,810,635	+		ABIE53_006431	0.26	+0.8
2,810,636	-		ABIE53_006431	0.26	-1.7
2,810,636	-		ABIE53_006431	0.26	-1.0
2,810,636	-		ABIE53_006431	0.26	-0.5
2,810,636	-		ABIE53_006431	0.26	+0.0
2,810,636	-		ABIE53_006431	0.26	+2.0
2,810,636	-		ABIE53_006431	0.26	+3.6
2,810,636	-		ABIE53_006431	0.26	-2.5
2,810,636	-		ABIE53_006431	0.26	+0.3
2,810,840	+		ABIE53_006431	0.48	-0.0
2,810,841	-		ABIE53_006431	0.48	+3.6
2,810,841	-		ABIE53_006431	0.48	+0.2
2,810,912	+		ABIE53_006431	0.56	-2.7
2,811,305	+				+1.0
2,811,349	-				+2.0
2,811,450	+				-0.8
2,811,450	+				+1.0
2,811,450	+				-0.0
2,811,450	+				-1.2
2,811,450	+				+0.1
2,811,451	-				-0.6
2,811,451	-				-0.6
2,811,451	-				+1.0
2,811,451	-				+1.0
2,811,485	+				-0.0
2,811,485	+				+1.2
2,811,486	-				-0.2
2,811,486	-				-1.4
2,811,526	+				-1.6
2,811,526	+				-0.8
2,811,526	+				-1.3
2,811,526	+				-2.5
2,811,527	-				+1.0
2,811,527	-				-0.6
2,811,557	+				+2.6
2,811,557	+				-0.8
2,811,558	-				+0.4
2,811,582	+				-0.6
2,811,582	+				-0.0
2,811,583	-				-0.7
2,811,583	-				-1.0
2,811,583	-				+0.7
2,811,583	-				+1.3
2,811,593	+				+1.0
2,811,624	+				-2.3
2,811,624	+				-0.3
2,811,625	-				+1.0
2,811,625	-				-0.2
2,811,625	-				+1.0
2,811,625	-				-0.0
2,811,625	-				+2.0
2,811,633	+				+1.0
2,811,799	+				-0.3
2,811,800	-				+1.6
2,811,800	-				-0.0
2,811,800	-				+1.0
2,811,805	+				-0.0
2,811,805	+				+0.1
2,811,805	+				-0.6
2,811,805	+				-0.8
2,811,805	+				-0.2
2,811,805	+				-2.2
2,811,805	+				-0.0
2,811,805	+				+1.0
2,811,806	-				-1.0
2,811,806	-				-2.3
2,811,808	+				-1.3
2,811,808	+				+2.0
2,811,808	+				+2.6
2,811,809	-				+2.6
2,811,820	+				+1.0
2,811,820	+				+2.0
2,811,820	+				-0.6
2,811,821	-				-0.0
2,811,829	+				-0.4
2,811,829	+				-0.6
2,811,829	+				+1.0
2,811,829	+				+1.0
2,811,829	+				+1.7
2,811,829	+				+1.0
2,811,830	-				+0.2
2,811,848	+		ABIE53_006432	0.12	-1.6
2,811,848	+		ABIE53_006432	0.12	+1.6
2,811,848	+		ABIE53_006432	0.12	+0.4
2,811,848	+		ABIE53_006432	0.12	+0.1
2,811,848	+		ABIE53_006432	0.12	+1.4
2,811,848	+		ABIE53_006432	0.12	-0.5
2,811,848	+		ABIE53_006432	0.12	+1.0
2,811,849	-		ABIE53_006432	0.12	+0.7
2,811,849	-		ABIE53_006432	0.12	-0.6
2,811,849	-		ABIE53_006432	0.12	+2.0
2,811,849	-		ABIE53_006432	0.12	-2.1
2,811,849	-		ABIE53_006432	0.12	-1.7
2,811,849	-		ABIE53_006432	0.12	+1.0
2,811,867	+		ABIE53_006432	0.17	-1.1
2,811,867	+		ABIE53_006432	0.17	+0.3
2,811,867	+		ABIE53_006432	0.17	-1.4
2,811,896	-		ABIE53_006432	0.24	+1.0
2,811,896	-		ABIE53_006432	0.24	+0.3
2,811,916	+		ABIE53_006432	0.28	+1.0
2,811,916	+		ABIE53_006432	0.28	-1.5
2,811,916	+		ABIE53_006432	0.28	-0.2
2,811,916	+		ABIE53_006432	0.28	-1.9
2,811,916	+		ABIE53_006432	0.28	+1.0
2,811,916	+		ABIE53_006432	0.28	+1.0
2,811,916	+		ABIE53_006432	0.28	+2.3
2,811,916	+		ABIE53_006432	0.28	-0.0
2,811,916	+		ABIE53_006432	0.28	-1.4
2,811,917	-		ABIE53_006432	0.29	+1.0
2,811,917	-		ABIE53_006432	0.29	+1.0
2,811,917	-		ABIE53_006432	0.29	+0.6
2,811,917	-		ABIE53_006432	0.29	+1.0
2,811,917	-		ABIE53_006432	0.29	+1.0
2,811,917	-		ABIE53_006432	0.29	+1.0
2,811,917	-		ABIE53_006432	0.29	+0.1
2,811,917	-		ABIE53_006432	0.29	+1.0
2,811,917	-		ABIE53_006432	0.29	-0.3
2,811,917	-		ABIE53_006432	0.29	-0.0
2,811,917	-		ABIE53_006432	0.29	+0.4
2,812,174	+				-0.3
2,812,174	+				-0.0
2,812,174	+				-0.6
2,812,174	+				+0.4
2,812,174	+				+3.8
2,812,174	+				+0.3
2,812,174	+				-0.6
2,812,174	+				-0.0
2,812,174	+				+1.0
2,812,175	-				+0.6
2,812,175	-				-1.6
2,812,175	-				-0.3