Experiment: Laminarin 10 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004533 and ABIE53_004534 are separated by 54 nucleotides ABIE53_004534 and ABIE53_004535 are separated by 64 nucleotides
ABIE53_004533: ABIE53_004533 - hypothetical protein, at 722,460 to 723,380
_004533
ABIE53_004534: ABIE53_004534 - hypothetical protein, at 723,435 to 724,046
_004534
ABIE53_004535: ABIE53_004535 - catechol 1,2-dioxygenase, at 724,111 to 725,046
_004535
Position (kb) 723
724
725 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 722.471 kb on + strand at 722.471 kb on + strand at 722.471 kb on + strand at 722.472 kb on - strand at 722.472 kb on - strand at 722.529 kb on - strand at 722.717 kb on - strand, within ABIE53_004533 at 722.717 kb on - strand, within ABIE53_004533 at 722.717 kb on - strand, within ABIE53_004533 at 722.717 kb on - strand, within ABIE53_004533 at 722.863 kb on - strand, within ABIE53_004533 at 722.863 kb on - strand, within ABIE53_004533 at 723.169 kb on - strand, within ABIE53_004533 at 723.169 kb on - strand, within ABIE53_004533 at 723.371 kb on - strand at 723.379 kb on - strand at 723.434 kb on + strand at 723.434 kb on + strand at 723.434 kb on + strand at 723.434 kb on + strand at 723.451 kb on + strand at 723.604 kb on + strand, within ABIE53_004534 at 723.604 kb on + strand, within ABIE53_004534 at 723.605 kb on - strand, within ABIE53_004534 at 723.608 kb on + strand, within ABIE53_004534 at 723.656 kb on + strand, within ABIE53_004534 at 723.701 kb on - strand, within ABIE53_004534 at 723.893 kb on + strand, within ABIE53_004534 at 723.946 kb on + strand, within ABIE53_004534 at 723.947 kb on - strand, within ABIE53_004534 at 723.978 kb on + strand, within ABIE53_004534 at 723.978 kb on + strand, within ABIE53_004534 at 723.978 kb on + strand, within ABIE53_004534 at 723.978 kb on + strand, within ABIE53_004534 at 723.979 kb on - strand, within ABIE53_004534 at 724.205 kb on + strand, within ABIE53_004535 at 724.205 kb on + strand, within ABIE53_004535 at 724.205 kb on + strand, within ABIE53_004535 at 724.332 kb on + strand, within ABIE53_004535 at 724.333 kb on - strand, within ABIE53_004535 at 724.333 kb on - strand, within ABIE53_004535 at 724.414 kb on + strand, within ABIE53_004535 at 724.414 kb on + strand, within ABIE53_004535 at 724.414 kb on + strand, within ABIE53_004535 at 724.415 kb on - strand, within ABIE53_004535 at 724.478 kb on + strand, within ABIE53_004535 at 724.478 kb on + strand, within ABIE53_004535 at 724.479 kb on - strand, within ABIE53_004535 at 724.718 kb on + strand, within ABIE53_004535 at 724.718 kb on + strand, within ABIE53_004535 at 724.719 kb on - strand, within ABIE53_004535 at 724.799 kb on + strand, within ABIE53_004535 at 724.799 kb on + strand, within ABIE53_004535 at 724.825 kb on + strand, within ABIE53_004535 at 724.825 kb on + strand, within ABIE53_004535 at 724.826 kb on - strand, within ABIE53_004535
Per-strain Table
Position Strand Gene LocusTag Fraction Laminarin 10 g/L (C) remove 722,471 + -0.1 722,471 + +1.6 722,471 + +0.7 722,472 - -0.7 722,472 - -0.8 722,529 - -1.1 722,717 - ABIE53_004533 0.28 -0.8 722,717 - ABIE53_004533 0.28 -0.5 722,717 - ABIE53_004533 0.28 +0.9 722,717 - ABIE53_004533 0.28 +0.5 722,863 - ABIE53_004533 0.44 -1.6 722,863 - ABIE53_004533 0.44 +1.2 723,169 - ABIE53_004533 0.77 -0.1 723,169 - ABIE53_004533 0.77 -0.1 723,371 - -1.1 723,379 - -0.2 723,434 + -1.7 723,434 + -0.7 723,434 + -1.2 723,434 + -0.7 723,451 + +0.1 723,604 + ABIE53_004534 0.28 -3.9 723,604 + ABIE53_004534 0.28 -0.1 723,605 - ABIE53_004534 0.28 -1.1 723,608 + ABIE53_004534 0.28 +0.9 723,656 + ABIE53_004534 0.36 -0.8 723,701 - ABIE53_004534 0.43 -1.3 723,893 + ABIE53_004534 0.75 -0.2 723,946 + ABIE53_004534 0.83 +0.3 723,947 - ABIE53_004534 0.84 -1.1 723,978 + ABIE53_004534 0.89 -1.1 723,978 + ABIE53_004534 0.89 -0.9 723,978 + ABIE53_004534 0.89 -1.5 723,978 + ABIE53_004534 0.89 -0.6 723,979 - ABIE53_004534 0.89 +0.9 724,205 + ABIE53_004535 0.10 -0.9 724,205 + ABIE53_004535 0.10 +0.3 724,205 + ABIE53_004535 0.10 +0.9 724,332 + ABIE53_004535 0.24 +1.6 724,333 - ABIE53_004535 0.24 -1.1 724,333 - ABIE53_004535 0.24 +1.4 724,414 + ABIE53_004535 0.32 -0.7 724,414 + ABIE53_004535 0.32 +0.9 724,414 + ABIE53_004535 0.32 +0.4 724,415 - ABIE53_004535 0.32 -0.5 724,478 + ABIE53_004535 0.39 +1.9 724,478 + ABIE53_004535 0.39 -1.1 724,479 - ABIE53_004535 0.39 -1.6 724,718 + ABIE53_004535 0.65 +0.4 724,718 + ABIE53_004535 0.65 +0.4 724,719 - ABIE53_004535 0.65 -0.6 724,799 + ABIE53_004535 0.74 +0.9 724,799 + ABIE53_004535 0.74 -1.3 724,825 + ABIE53_004535 0.76 +0.3 724,825 + ABIE53_004535 0.76 +0.2 724,826 - ABIE53_004535 0.76 +0.1
Or see this region's nucleotide sequence