Experiment: MoLS4 with L-Asparagine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0544 and DVU0545 overlap by 1 nucleotides DVU0545 and DVU0547 are separated by 448 nucleotides DVU0547 and livH are separated by 103 nucleotides
DVU0544: DVU0544 - hypothetical protein (TIGR), at 615,721 to 616,122
DVU0544
DVU0545: DVU0545 - conserved hypothetical protein (TIGR), at 616,122 to 616,547
DVU0545
DVU0547: DVU0547 - high-affinity branched chain amino acid ABC transporter, periplasmic branched chain amino acid-binding protein (TIGR), at 616,996 to 618,114
DVU0547
DVU0548: livH - high-affinity branched-chain amino acid ABC transporter, permease protein (TIGR), at 618,218 to 619,126
livH
Position (kb) 616
617
618
619 Strain fitness (log2 ratio) -1
0
1
2 at 616.017 kb on + strand, within DVU0544 at 616.086 kb on + strand at 616.133 kb on - strand at 616.178 kb on - strand, within DVU0545 at 616.193 kb on - strand, within DVU0545 at 616.258 kb on + strand, within DVU0545 at 616.343 kb on + strand, within DVU0545 at 616.353 kb on - strand, within DVU0545 at 616.374 kb on + strand, within DVU0545 at 616.388 kb on - strand, within DVU0545 at 616.471 kb on + strand, within DVU0545 at 616.471 kb on + strand, within DVU0545 at 616.479 kb on - strand, within DVU0545 at 616.492 kb on - strand, within DVU0545 at 616.515 kb on + strand at 616.548 kb on + strand at 616.554 kb on - strand at 616.652 kb on - strand at 616.696 kb on - strand at 616.698 kb on + strand at 616.719 kb on - strand at 616.900 kb on + strand at 617.009 kb on + strand at 617.052 kb on - strand at 617.053 kb on + strand at 617.085 kb on + strand at 617.113 kb on - strand, within DVU0547 at 617.120 kb on + strand, within DVU0547 at 617.125 kb on + strand, within DVU0547 at 617.174 kb on - strand, within DVU0547 at 617.226 kb on + strand, within DVU0547 at 617.234 kb on - strand, within DVU0547 at 617.301 kb on - strand, within DVU0547 at 617.313 kb on + strand, within DVU0547 at 617.386 kb on - strand, within DVU0547 at 617.405 kb on + strand, within DVU0547 at 617.529 kb on + strand, within DVU0547 at 617.537 kb on - strand, within DVU0547 at 617.582 kb on - strand, within DVU0547 at 617.589 kb on + strand, within DVU0547 at 617.609 kb on + strand, within DVU0547 at 617.619 kb on + strand, within DVU0547 at 617.665 kb on + strand, within DVU0547 at 617.687 kb on - strand, within DVU0547 at 617.796 kb on + strand, within DVU0547 at 617.835 kb on - strand, within DVU0547 at 617.868 kb on + strand, within DVU0547 at 617.893 kb on - strand, within DVU0547 at 617.893 kb on - strand, within DVU0547 at 618.035 kb on - strand at 618.059 kb on + strand at 618.136 kb on - strand at 618.292 kb on + strand at 618.292 kb on + strand at 618.297 kb on + strand at 618.333 kb on - strand, within livH at 618.449 kb on + strand, within livH at 618.464 kb on + strand, within livH at 618.464 kb on + strand, within livH at 618.501 kb on - strand, within livH at 618.521 kb on - strand, within livH at 618.588 kb on - strand, within livH at 618.699 kb on + strand, within livH at 618.706 kb on + strand, within livH at 618.716 kb on - strand, within livH at 618.722 kb on + strand, within livH at 618.739 kb on + strand, within livH at 618.744 kb on + strand, within livH at 618.747 kb on - strand, within livH at 618.747 kb on - strand, within livH at 618.747 kb on - strand, within livH at 618.777 kb on + strand, within livH at 618.801 kb on + strand, within livH at 618.815 kb on - strand, within livH at 618.924 kb on - strand, within livH at 619.060 kb on + strand at 619.113 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Asparagine as nutrient 10mM remove 616,017 + DVU0544 0.74 -0.6 616,086 + -1.1 616,133 - +0.2 616,178 - DVU0545 0.13 -0.5 616,193 - DVU0545 0.17 +0.2 616,258 + DVU0545 0.32 +0.2 616,343 + DVU0545 0.52 -0.1 616,353 - DVU0545 0.54 +0.1 616,374 + DVU0545 0.59 -0.0 616,388 - DVU0545 0.62 +0.1 616,471 + DVU0545 0.82 -0.6 616,471 + DVU0545 0.82 +0.5 616,479 - DVU0545 0.84 -0.9 616,492 - DVU0545 0.87 -0.7 616,515 + -0.1 616,548 + +0.2 616,554 - +0.3 616,652 - +1.4 616,696 - +0.7 616,698 + +0.4 616,719 - +0.8 616,900 + +0.1 617,009 + +0.8 617,052 - +0.9 617,053 + +0.5 617,085 + +1.3 617,113 - DVU0547 0.10 +1.0 617,120 + DVU0547 0.11 +1.1 617,125 + DVU0547 0.12 +1.6 617,174 - DVU0547 0.16 +1.6 617,226 + DVU0547 0.21 +1.0 617,234 - DVU0547 0.21 -0.7 617,301 - DVU0547 0.27 +2.2 617,313 + DVU0547 0.28 +0.6 617,386 - DVU0547 0.35 +1.1 617,405 + DVU0547 0.37 +1.1 617,529 + DVU0547 0.48 +0.7 617,537 - DVU0547 0.48 +1.0 617,582 - DVU0547 0.52 +0.8 617,589 + DVU0547 0.53 +1.3 617,609 + DVU0547 0.55 +1.4 617,619 + DVU0547 0.56 +1.1 617,665 + DVU0547 0.60 +1.0 617,687 - DVU0547 0.62 +1.4 617,796 + DVU0547 0.71 +0.5 617,835 - DVU0547 0.75 +0.6 617,868 + DVU0547 0.78 +0.0 617,893 - DVU0547 0.80 +1.5 617,893 - DVU0547 0.80 -0.2 618,035 - +0.9 618,059 + +0.6 618,136 - +0.9 618,292 + +1.6 618,292 + +0.6 618,297 + -0.0 618,333 - livH DVU0548 0.13 +1.0 618,449 + livH DVU0548 0.25 -0.2 618,464 + livH DVU0548 0.27 +0.6 618,464 + livH DVU0548 0.27 +0.8 618,501 - livH DVU0548 0.31 +0.9 618,521 - livH DVU0548 0.33 +1.2 618,588 - livH DVU0548 0.41 +1.6 618,699 + livH DVU0548 0.53 +0.8 618,706 + livH DVU0548 0.54 -0.5 618,716 - livH DVU0548 0.55 +0.9 618,722 + livH DVU0548 0.55 +0.2 618,739 + livH DVU0548 0.57 -0.5 618,744 + livH DVU0548 0.58 -0.0 618,747 - livH DVU0548 0.58 +0.5 618,747 - livH DVU0548 0.58 +1.2 618,747 - livH DVU0548 0.58 +0.9 618,777 + livH DVU0548 0.61 -0.5 618,801 + livH DVU0548 0.64 +0.9 618,815 - livH DVU0548 0.66 -0.0 618,924 - livH DVU0548 0.78 +1.3 619,060 + +0.9 619,113 - +1.4
Or see this region's nucleotide sequence