Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005997

Experiment: Shikimic Acid 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid 5 mM (C)
2,318,291	+		ABIE53_005996	0.60	-2.2
2,318,291	+		ABIE53_005996	0.60	-1.8
2,318,292	-		ABIE53_005996	0.60	+1.1
2,318,327	+		ABIE53_005996	0.62	+0.1
2,318,327	+		ABIE53_005996	0.62	-0.5
2,318,327	+		ABIE53_005996	0.62	-0.2
2,318,327	+		ABIE53_005996	0.62	-0.6
2,318,327	+		ABIE53_005996	0.62	+0.1
2,318,327	+		ABIE53_005996	0.62	+3.1
2,318,327	+		ABIE53_005996	0.62	+0.0
2,318,328	-		ABIE53_005996	0.62	+1.1
2,318,454	+		ABIE53_005996	0.67	-1.4
2,318,455	-		ABIE53_005996	0.67	-0.2
2,318,455	-		ABIE53_005996	0.67	-0.9
2,318,455	-		ABIE53_005996	0.67	-0.5
2,318,518	+		ABIE53_005996	0.70	-0.9
2,318,543	+		ABIE53_005996	0.71	+0.1
2,318,543	+		ABIE53_005996	0.71	-0.7
2,318,544	-		ABIE53_005996	0.71	+2.1
2,318,607	-		ABIE53_005996	0.73	-0.5
2,318,607	-		ABIE53_005996	0.73	-0.5
2,318,648	+		ABIE53_005996	0.75	-1.7
2,318,955	-		ABIE53_005996	0.88	-1.3
2,318,955	-		ABIE53_005996	0.88	-2.2
2,318,955	-		ABIE53_005996	0.88	-0.5
2,318,955	-		ABIE53_005996	0.88	-1.2
2,318,981	+		ABIE53_005996	0.89	-1.2
2,318,981	+		ABIE53_005996	0.89	+1.1
2,318,981	+		ABIE53_005996	0.89	-1.6
2,318,981	+		ABIE53_005996	0.89	-2.5
2,318,982	-		ABIE53_005996	0.89	+2.7
2,318,982	-		ABIE53_005996	0.89	-0.5
2,318,982	-		ABIE53_005996	0.89	+1.1
2,318,982	-		ABIE53_005996	0.89	-2.6
2,318,982	-		ABIE53_005996	0.89	-2.4
2,318,982	-		ABIE53_005996	0.89	+2.1
2,319,518	+		ABIE53_005997	0.23	-0.5
2,319,518	+		ABIE53_005997	0.23	-1.0
2,319,643	+		ABIE53_005997	0.34	+1.1
2,319,643	+		ABIE53_005997	0.34	+1.7
2,319,776	+		ABIE53_005997	0.45	+1.7
2,319,931	+		ABIE53_005997	0.59	-0.7
2,319,932	-		ABIE53_005997	0.59	+0.1
2,320,010	+		ABIE53_005997	0.66	-0.1
2,320,011	-		ABIE53_005997	0.66	+1.1
2,320,011	-		ABIE53_005997	0.66	-0.2
2,320,230	+		ABIE53_005997	0.85	+2.7
2,320,230	+		ABIE53_005997	0.85	-3.3
2,320,230	+		ABIE53_005997	0.85	+1.1
2,320,230	+		ABIE53_005997	0.85	+0.3
2,320,230	+		ABIE53_005997	0.85	+1.2
2,320,230	+		ABIE53_005997	0.85	-0.5
2,320,230	+		ABIE53_005997	0.85	+3.4
2,320,230	+		ABIE53_005997	0.85	+0.9
2,320,230	+		ABIE53_005997	0.85	-0.1
2,320,231	-		ABIE53_005997	0.85	+2.4
2,320,231	-		ABIE53_005997	0.85	-1.5
2,320,231	-		ABIE53_005997	0.85	-0.5
2,320,231	-		ABIE53_005997	0.85	+1.1
2,320,261	+		ABIE53_005997	0.87	-0.2
2,320,351	+				-0.5
2,320,460	-				-1.1
2,320,470	+				+1.1
2,320,470	+				+0.5
2,320,471	-				-1.2
2,320,471	-				+1.1
2,320,471	-				-1.7
2,320,525	+				+0.1
2,320,526	-				-0.2
2,320,545	+				+1.1
2,320,546	-				+1.1
2,320,546	-				-0.5
2,320,546	-				-1.7
2,320,573	+				+1.1
2,320,573	+				-0.6
2,320,579	-				-3.5
2,321,065	+		ABIE53_005998	0.57	+2.1
2,321,065	+		ABIE53_005998	0.57	+0.1
2,321,356	-				-0.1
2,321,356	-				-2.8