Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005649

Experiment: Shikimic Acid 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid 5 mM (C)
1,949,092	+		ABIE53_005648	0.74	+1.1
1,949,092	+		ABIE53_005648	0.74	+0.7
1,949,092	+		ABIE53_005648	0.74	-1.9
1,949,092	+		ABIE53_005648	0.74	-0.4
1,949,092	+		ABIE53_005648	0.74	-0.4
1,949,092	+		ABIE53_005648	0.74	-2.3
1,949,092	+		ABIE53_005648	0.74	+0.1
1,949,092	+		ABIE53_005648	0.74	-0.4
1,949,092	+		ABIE53_005648	0.74	+1.1
1,949,092	+		ABIE53_005648	0.74	-0.2
1,949,092	+		ABIE53_005648	0.74	+1.1
1,949,093	-		ABIE53_005648	0.74	+0.6
1,949,093	-		ABIE53_005648	0.74	+2.1
1,949,093	-		ABIE53_005648	0.74	+0.1
1,949,093	-		ABIE53_005648	0.74	+2.1
1,949,093	-		ABIE53_005648	0.74	-0.9
1,949,177	-		ABIE53_005648	0.87	-2.9
1,949,253	+				-3.2
1,949,253	+				+0.1
1,949,253	+				-2.3
1,949,254	-				+0.5
1,949,254	-				+1.1
1,949,254	-				+1.1
1,949,291	-				+0.6
1,949,291	-				+0.6
1,949,291	-				-0.9
1,949,337	+				+0.1
1,949,371	+				-2.0
1,949,403	+				+0.1
1,949,404	-				-2.9
1,949,409	+				+1.1
1,949,409	+				+0.1
1,949,409	+				+0.1
1,949,409	+				-1.2
1,949,409	+				-1.9
1,949,410	-				+1.1
1,949,410	-				-0.4
1,949,410	-				+0.7
1,949,411	+				-0.4
1,949,411	+				-1.7
1,949,412	-				+1.1
1,949,419	+				+1.1
1,949,420	-				+0.4
1,949,420	-				-1.0
1,949,420	-				+0.1
1,949,428	+				-1.2
1,949,428	+				+2.1
1,949,429	-				-0.4
1,949,429	-				+0.6
1,949,429	-				-1.3
1,949,429	-				-2.4
1,949,429	-				-2.4
1,949,443	+				-0.4
1,949,443	+				-2.3
1,949,443	+				-0.4
1,949,443	+				+0.1
1,949,449	-				-0.6
1,949,449	-				+1.1
1,949,531	+				+1.1
1,949,571	+				+1.1
1,949,571	+				+0.8
1,949,571	+				-0.4
1,949,572	-				-0.4
1,949,572	-				+1.1
1,949,688	+				+1.1
1,949,688	+				-2.8
1,949,689	-				-0.9
1,949,689	-				-2.0
1,949,689	-				+0.1
1,949,691	+				-1.2
1,949,691	+				+1.1
1,949,691	+				-0.7
1,949,691	+				+1.1
1,949,691	+				-0.3
1,949,692	-				-0.9
1,949,692	-				-2.6
1,949,692	-				+1.1
1,949,692	-				-0.7
1,949,692	-				+0.1
1,949,699	-				-1.7
1,949,699	-				-1.9
1,949,699	-				-0.7
1,949,714	+				+1.1
1,949,714	+				+1.7
1,949,715	-				+1.7
1,949,717	+				-1.7
1,949,718	-				+0.1
1,949,718	-				-0.2
1,949,718	-				-0.4
1,949,718	-				-1.2
1,949,801	+				+1.1
1,949,801	+				+1.1
1,949,802	-				+1.1
1,949,802	-				-0.6
1,949,802	-				+1.1
1,949,802	-				-0.4
1,949,806	+				+1.1
1,949,806	+				-1.2
1,949,806	+				+1.1
1,949,807	-				+1.1
1,949,812	+				-0.3
1,949,812	+				+0.0
1,949,812	+				+1.1
1,949,812	+				-1.4
1,949,812	+				+1.1
1,949,812	+				-1.4
1,949,812	+				-2.3
1,949,812	+				-0.6
1,949,813	-				+1.5
1,949,813	-				+0.1
1,949,813	-				-2.3
1,949,813	-				+0.7
1,949,813	-				-1.2
1,949,824	-				-1.2
1,949,938	+				-0.4
1,949,938	+				-0.4
1,949,938	+				-0.2
1,949,938	+				-1.2
1,949,938	+				+3.2
1,949,938	+				+1.2
1,949,939	-				-2.8
1,949,939	-				-2.0
1,949,939	-				+1.2
1,949,939	-				-2.2
1,949,939	-				+1.2
1,949,939	-				+0.2
1,949,949	-				+1.2
1,949,949	-				+1.2
1,949,949	-				-0.0
1,949,949	-				-2.7
1,949,949	-				-0.8
1,949,949	-				+0.2
1,949,949	-				+1.2
1,950,064	+				+0.2
1,950,064	+				+1.2
1,950,090	+				-1.2
1,950,090	+				-2.8
1,950,090	+				+2.7
1,950,090	+				+2.7
1,950,090	+				+0.2
1,950,090	+				+2.5
1,950,090	+				-1.8
1,950,090	+				+0.2
1,950,090	+				-2.3
1,950,090	+				-2.4
1,950,090	+				-0.4
1,950,090	+				+0.6
1,950,090	+				+0.2
1,950,091	-				-1.5
1,950,091	-				-0.8
1,950,091	-				+0.2
1,950,091	-				+0.0
1,950,091	-				-0.7
1,950,091	-				+0.9
1,950,091	-				+2.0
1,950,091	-				+1.2
1,950,091	-				-2.3
1,950,091	-				+1.2
1,950,091	-				+0.1
1,950,166	+				+1.2
1,950,166	+				-2.5
1,950,166	+				+2.2
1,950,166	+				-2.2
1,950,167	-				+1.2
1,950,167	-				-1.2
1,950,233	+				+0.8
1,950,234	-				-0.2
1,950,234	-				+1.2
1,950,234	-				+1.2
1,950,308	-		ABIE53_005649	0.14	+0.2
1,950,309	+		ABIE53_005649	0.14	+0.7
1,950,309	+		ABIE53_005649	0.14	+0.6
1,950,309	+		ABIE53_005649	0.14	-0.4
1,950,309	+		ABIE53_005649	0.14	+0.2
1,950,309	+		ABIE53_005649	0.14	+0.2
1,950,310	-		ABIE53_005649	0.14	-1.2
1,950,310	-		ABIE53_005649	0.14	+1.2
1,950,310	-		ABIE53_005649	0.14	+1.2
1,950,310	-		ABIE53_005649	0.14	+0.5
1,950,310	-		ABIE53_005649	0.14	+0.6
1,950,456	+		ABIE53_005649	0.23	+2.2
1,950,490	+		ABIE53_005649	0.25	+1.2
1,950,491	-		ABIE53_005649	0.25	+1.2
1,950,520	+		ABIE53_005649	0.27	-0.6
1,950,521	-		ABIE53_005649	0.27	+1.5
1,950,612	+		ABIE53_005649	0.33	-0.8
1,950,612	+		ABIE53_005649	0.33	+2.2
1,950,612	+		ABIE53_005649	0.33	+0.6
1,950,612	+		ABIE53_005649	0.33	+2.2
1,950,612	+		ABIE53_005649	0.33	+0.2
1,950,613	-		ABIE53_005649	0.33	-0.4
1,950,613	-		ABIE53_005649	0.33	+1.2
1,950,613	-		ABIE53_005649	0.33	+0.2
1,950,613	-		ABIE53_005649	0.33	+1.2
1,950,613	-		ABIE53_005649	0.33	+0.8
1,950,613	-		ABIE53_005649	0.33	+0.2
1,950,613	-		ABIE53_005649	0.33	-0.8
1,950,628	+		ABIE53_005649	0.34	-0.8
1,950,629	-		ABIE53_005649	0.34	-1.7
1,950,702	-		ABIE53_005649	0.38	+0.4
1,950,708	+		ABIE53_005649	0.39	-1.4
1,950,708	+		ABIE53_005649	0.39	+1.2
1,950,708	+		ABIE53_005649	0.39	+2.2
1,950,709	-		ABIE53_005649	0.39	+0.6
1,950,709	-		ABIE53_005649	0.39	+1.2
1,950,709	-		ABIE53_005649	0.39	-0.4
1,950,709	-		ABIE53_005649	0.39	+0.2
1,950,709	-		ABIE53_005649	0.39	+1.2
1,950,709	-		ABIE53_005649	0.39	+1.2
1,950,709	-		ABIE53_005649	0.39	+1.2
1,950,709	-		ABIE53_005649	0.39	+1.2
1,950,709	-		ABIE53_005649	0.39	+2.2
1,950,742	+		ABIE53_005649	0.41	+1.2
1,950,743	-		ABIE53_005649	0.41	+0.2
1,950,743	-		ABIE53_005649	0.41	+0.2
1,950,754	+		ABIE53_005649	0.42	-0.9
1,950,754	+		ABIE53_005649	0.42	+2.7
1,950,763	+		ABIE53_005649	0.42	-0.4
1,950,763	+		ABIE53_005649	0.42	+0.3
1,950,764	-		ABIE53_005649	0.42	+1.7
1,950,785	+		ABIE53_005649	0.44	+2.7
1,950,845	+		ABIE53_005649	0.47	-0.2
1,950,845	+		ABIE53_005649	0.47	+0.2
1,950,845	+		ABIE53_005649	0.47	+0.7
1,950,845	+		ABIE53_005649	0.47	+1.7
1,950,846	-		ABIE53_005649	0.48	-0.7
1,950,846	-		ABIE53_005649	0.48	-1.3
1,950,846	-		ABIE53_005649	0.48	-0.7
1,950,846	-		ABIE53_005649	0.48	-1.6
1,950,846	-		ABIE53_005649	0.48	+0.2
1,950,917	+		ABIE53_005649	0.52	+0.2
1,950,917	+		ABIE53_005649	0.52	+1.2
1,950,918	-		ABIE53_005649	0.52	+0.2
1,950,918	-		ABIE53_005649	0.52	+0.4
1,950,918	-		ABIE53_005649	0.52	-0.8
1,950,970	+		ABIE53_005649	0.55	+1.2
1,950,971	-		ABIE53_005649	0.55	+1.2
1,950,984	+		ABIE53_005649	0.56	-0.4
1,950,984	+		ABIE53_005649	0.56	-0.8
1,950,984	+		ABIE53_005649	0.56	-0.4
1,950,985	-		ABIE53_005649	0.56	-0.0
1,950,985	-		ABIE53_005649	0.56	+0.2
1,950,985	-		ABIE53_005649	0.56	+1.3
1,950,985	-		ABIE53_005649	0.56	+1.6
1,950,985	-		ABIE53_005649	0.56	-0.1
1,950,985	-		ABIE53_005649	0.56	+0.2
1,950,998	-		ABIE53_005649	0.57	-1.8
1,951,101	-		ABIE53_005649	0.64	+0.5
1,951,245	+		ABIE53_005649	0.73	-0.2
1,951,246	-		ABIE53_005649	0.73	+0.2
1,951,246	-		ABIE53_005649	0.73	-1.8
1,951,246	-		ABIE53_005649	0.73	+0.4
1,951,246	-		ABIE53_005649	0.73	+0.2
1,951,322	+		ABIE53_005649	0.77	+0.2
1,951,323	-		ABIE53_005649	0.77	+2.2
1,951,346	+		ABIE53_005649	0.79	-2.7
1,951,347	-		ABIE53_005649	0.79	+0.4
1,951,347	-		ABIE53_005649	0.79	+0.2
1,951,369	+		ABIE53_005649	0.80	-0.8
1,951,370	-		ABIE53_005649	0.80	+2.2
1,951,370	-		ABIE53_005649	0.80	+0.2
1,951,370	-		ABIE53_005649	0.80	+0.2
1,951,398	+		ABIE53_005649	0.82	+0.2
1,951,399	-		ABIE53_005649	0.82	+1.2
1,951,411	+		ABIE53_005649	0.83	+0.7
1,951,465	+		ABIE53_005649	0.86	+1.2
1,951,466	-		ABIE53_005649	0.86	+0.9
1,951,466	-		ABIE53_005649	0.86	+0.2
1,951,513	+		ABIE53_005649	0.89	+0.2
1,951,513	+		ABIE53_005649	0.89	-1.7
1,951,514	-		ABIE53_005649	0.89	-0.9
1,951,661	-				+0.6
1,951,661	-				+0.9
1,951,665	+				-1.4
1,951,665	+				-2.8
1,951,665	+				+1.2
1,951,665	+				+1.2
1,951,665	+				+0.2
1,951,666	-				-1.2
1,951,666	-				-0.4
1,951,685	-				+2.0
1,951,815	+				+2.7
1,951,816	-				-1.7
1,951,816	-				+0.8
1,951,881	-				-2.5
1,951,891	+				+1.2
1,951,891	+				-3.6
1,951,891	+				+0.2
1,951,891	+				+1.2
1,951,892	-				+1.7
1,951,892	-				+0.1
1,951,892	-				+0.7
1,951,892	-				+0.5
1,951,893	+				-1.8
1,951,902	+		ABIE53_005650	0.11	+1.2
1,951,903	-		ABIE53_005650	0.11	+0.9
1,951,903	-		ABIE53_005650	0.11	+0.4
1,951,906	+		ABIE53_005650	0.11	-3.3
1,951,906	+		ABIE53_005650	0.11	-2.2
1,951,906	+		ABIE53_005650	0.11	+1.2
1,951,907	-		ABIE53_005650	0.11	+0.0
1,951,907	-		ABIE53_005650	0.11	+0.8
1,951,907	-		ABIE53_005650	0.11	-0.8
1,951,907	-		ABIE53_005650	0.11	+1.2
1,951,910	+		ABIE53_005650	0.11	-1.4
1,951,911	-		ABIE53_005650	0.11	+0.2
1,951,945	+		ABIE53_005650	0.13	-0.2
1,951,945	+		ABIE53_005650	0.13	+1.2
1,951,946	-		ABIE53_005650	0.14	+0.4
1,951,996	-		ABIE53_005650	0.17	-2.2
1,951,996	-		ABIE53_005650	0.17	+0.2
1,951,998	-		ABIE53_005650	0.17	-0.8
1,951,999	+		ABIE53_005650	0.17	-0.4
1,951,999	+		ABIE53_005650	0.17	-1.4
1,951,999	+		ABIE53_005650	0.17	-1.4
1,951,999	+		ABIE53_005650	0.17	-1.2
1,951,999	+		ABIE53_005650	0.17	-1.4
1,951,999	+		ABIE53_005650	0.17	+1.2
1,951,999	+		ABIE53_005650	0.17	+2.2
1,951,999	+		ABIE53_005650	0.17	+1.2
1,952,000	-		ABIE53_005650	0.17	-2.0
1,952,000	-		ABIE53_005650	0.17	+0.2
1,952,000	-		ABIE53_005650	0.17	-1.2
1,952,000	-		ABIE53_005650	0.17	-1.8
1,952,000	-		ABIE53_005650	0.17	+0.2
1,952,000	-		ABIE53_005650	0.17	-0.4
1,952,000	-		ABIE53_005650	0.17	+1.2
1,952,000	-		ABIE53_005650	0.17	-1.4
1,952,000	-		ABIE53_005650	0.17	-2.5
1,952,000	-		ABIE53_005650	0.17	+2.2
1,952,002	+		ABIE53_005650	0.17	+1.2
1,952,003	-		ABIE53_005650	0.17	-2.1
1,952,003	-		ABIE53_005650	0.17	+0.8
1,952,214	+		ABIE53_005650	0.32	+0.2
1,952,214	+		ABIE53_005650	0.32	-2.8
1,952,214	+		ABIE53_005650	0.32	-0.8
1,952,214	+		ABIE53_005650	0.32	-0.4
1,952,215	-		ABIE53_005650	0.32	+0.4
1,952,215	-		ABIE53_005650	0.32	+0.2
1,952,215	-		ABIE53_005650	0.32	+0.2
1,952,327	-		ABIE53_005650	0.39	+1.2
1,952,518	-		ABIE53_005650	0.52	-0.8
1,952,579	+		ABIE53_005650	0.56	-2.3
1,952,580	-		ABIE53_005650	0.56	-1.3
1,952,580	-		ABIE53_005650	0.56	+1.7
1,952,580	-		ABIE53_005650	0.56	+1.2
1,952,627	+		ABIE53_005650	0.59	-1.1
1,952,627	+		ABIE53_005650	0.59	+0.7
1,952,628	-		ABIE53_005650	0.59	+1.2