Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005307

Experiment: Shikimic Acid 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid 5 mM (C)
1,564,581	+		ABIE53_005306	0.58	-0.1
1,564,749	+		ABIE53_005306	0.67	-2.3
1,564,750	-		ABIE53_005306	0.67	-1.3
1,565,047	+		ABIE53_005306	0.83	-1.5
1,565,295	+				-1.0
1,565,296	-				+1.4
1,565,307	+				+2.4
1,565,446	-				-2.5
1,565,601	+		ABIE53_005307	0.24	+0.9
1,565,623	-		ABIE53_005307	0.29	-1.4
1,565,940	+		ABIE53_005307	0.87	+0.9
1,566,004	+				-1.5
1,566,232	+		ABIE53_005308	0.17	-0.5
1,566,233	-		ABIE53_005308	0.18	-0.5
1,566,359	+		ABIE53_005308	0.27	-0.3
1,566,391	-		ABIE53_005308	0.30	-3.1
1,566,600	+		ABIE53_005308	0.46	-1.4
1,566,601	-		ABIE53_005308	0.46	+0.9
1,566,900	+		ABIE53_005308	0.69	+1.4
1,566,949	+		ABIE53_005308	0.73	-1.3
1,566,949	+		ABIE53_005308	0.73	+0.9
1,566,949	+		ABIE53_005308	0.73	+0.9
1,566,949	+		ABIE53_005308	0.73	-2.8
1,566,950	-		ABIE53_005308	0.73	-2.0
1,566,950	-		ABIE53_005308	0.73	-1.1
1,566,950	-		ABIE53_005308	0.73	-0.7
1,566,957	+		ABIE53_005308	0.73	-2.0
1,566,958	-		ABIE53_005308	0.73	-1.0